==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 05-JAN-10 2KSJ . COMPND 2 MOLECULE: CAPSID PROTEIN G8P; . SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PF1; . AUTHOR S.PARK,F.MARASSI,D.BLACK,S.J.OPELLA . 46 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4564.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 82.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 19.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 123 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-146.9 -56.5 10.3 40.9 2 2 A V + 0 0 150 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.877 360.0 163.8-104.3 109.8 -59.1 13.0 40.5 3 3 A I + 0 0 150 -2,-0.7 2,-0.3 3,-0.0 0, 0.0 -0.990 10.1 124.8-130.0 133.5 -62.5 12.1 42.0 4 4 A D S >> S- 0 0 113 -2,-0.4 3,-1.1 1,-0.0 4,-1.0 -0.953 73.4 -67.7-167.1 178.9 -65.4 14.4 42.8 5 5 A T H 3> S+ 0 0 91 -2,-0.3 4,-3.8 1,-0.3 5,-0.3 0.758 116.1 78.0 -51.7 -27.7 -69.1 15.0 42.2 6 6 A S H 3> S+ 0 0 76 1,-0.2 4,-3.9 2,-0.2 5,-0.4 0.953 94.5 46.4 -49.3 -54.6 -68.2 15.9 38.6 7 7 A A H <> S+ 0 0 57 -3,-1.1 4,-3.6 1,-0.2 5,-0.3 0.917 114.5 49.1 -52.6 -44.8 -67.9 12.3 37.7 8 8 A V H X S+ 0 0 79 -4,-1.0 4,-3.7 2,-0.2 -2,-0.2 0.963 115.3 42.5 -59.3 -54.1 -71.2 11.7 39.6 9 9 A E H X S+ 0 0 96 -4,-3.8 4,-3.3 2,-0.2 -2,-0.2 0.952 120.2 42.0 -58.7 -52.6 -72.9 14.5 37.7 10 10 A S H X S+ 0 0 39 -4,-3.9 4,-3.3 -5,-0.3 -2,-0.2 0.973 116.5 48.8 -58.9 -54.5 -71.4 13.7 34.4 11 11 A A H < S+ 0 0 59 -4,-3.6 -2,-0.2 -5,-0.4 -1,-0.2 0.923 112.8 48.4 -51.1 -47.7 -72.0 10.0 35.0 12 12 A I H < S+ 0 0 121 -4,-3.7 -1,-0.2 -5,-0.3 -2,-0.2 0.960 112.7 47.3 -57.4 -53.4 -75.6 10.7 36.0 13 13 A T H >< S+ 0 0 69 -4,-3.3 2,-3.3 1,-0.3 3,-0.6 0.883 96.4 74.9 -55.3 -41.6 -76.1 12.9 32.9 14 14 A D T 3< S+ 0 0 131 -4,-3.3 -1,-0.3 1,-0.3 -2,-0.1 -0.181 95.6 52.9 -68.8 50.3 -74.6 10.2 30.7 15 15 A G T 3 - 0 0 41 -2,-3.3 2,-0.8 -3,-0.2 3,-0.5 0.015 68.2-179.4-177.9 48.8 -77.8 8.2 31.1 16 16 A Q S < S- 0 0 174 -3,-0.6 -3,-0.1 1,-0.3 -2,-0.0 -0.504 76.7 -52.6 -65.9 105.4 -80.8 10.3 30.2 17 17 A G S S+ 0 0 89 -2,-0.8 -1,-0.3 1,-0.1 2,-0.1 0.776 96.1 161.4 24.9 58.8 -83.7 8.0 30.8 18 18 A D > - 0 0 97 -3,-0.5 3,-0.9 1,-0.0 4,-0.5 -0.234 58.9 -91.7 -93.9-174.4 -82.0 5.3 28.6 19 19 A M T 3 S+ 0 0 106 1,-0.2 4,-0.4 2,-0.2 -2,-0.1 0.307 104.3 94.5 -81.2 9.2 -82.5 1.6 28.3 20 20 A K T 3 S+ 0 0 162 1,-0.2 4,-0.4 2,-0.1 -1,-0.2 0.769 88.5 44.2 -71.0 -24.6 -79.8 1.1 31.0 21 21 A A S X> S+ 0 0 62 -3,-0.9 3,-1.4 2,-0.2 4,-1.1 0.866 91.5 74.7 -86.8 -40.6 -82.6 1.0 33.6 22 22 A I H 3> S+ 0 0 106 -4,-0.5 4,-1.4 1,-0.3 -1,-0.2 0.769 93.2 67.1 -42.1 -24.6 -85.1 -1.3 31.9 23 23 A G H 3> S+ 0 0 26 -4,-0.4 4,-1.8 2,-0.2 3,-0.5 0.949 86.7 59.2 -65.3 -54.6 -82.4 -3.8 32.9 24 24 A G H X> S+ 0 0 49 -3,-1.4 4,-2.7 -4,-0.4 3,-0.7 0.926 104.9 52.5 -45.9 -44.1 -83.0 -3.5 36.7 25 25 A Y H 3X S+ 0 0 189 -4,-1.1 4,-2.4 1,-0.3 5,-0.3 0.936 102.4 59.0 -55.1 -43.8 -86.5 -4.6 36.0 26 26 A I H 3X S+ 0 0 111 -4,-1.4 4,-1.0 -3,-0.5 -1,-0.3 0.880 109.6 45.6 -51.6 -37.0 -85.0 -7.6 34.1 27 27 A V H X S+ 0 0 48 -4,-2.4 4,-2.0 1,-0.2 3,-1.0 0.908 102.1 66.0 -60.3 -41.8 -90.3 -19.4 43.4 37 37 A G H 3X S+ 0 0 34 -4,-1.6 4,-1.6 1,-0.3 -1,-0.2 0.889 99.1 51.5 -47.4 -44.8 -88.2 -22.1 41.8 38 38 A L H 3< S+ 0 0 127 -4,-1.6 4,-0.5 -3,-0.5 -1,-0.3 0.849 106.9 56.0 -61.8 -34.0 -87.0 -23.2 45.3 39 39 A I H XX S+ 0 0 98 -4,-1.0 3,-2.4 -3,-1.0 4,-1.0 0.965 103.1 50.6 -64.4 -53.4 -90.6 -23.4 46.3 40 40 A Y H >X S+ 0 0 132 -4,-2.0 4,-1.5 1,-0.3 3,-0.6 0.881 99.9 66.9 -52.2 -38.7 -91.8 -25.8 43.6 41 41 A S H 3< S+ 0 0 53 -4,-1.6 -1,-0.3 -5,-0.3 4,-0.3 0.763 99.6 53.3 -52.1 -26.9 -88.8 -28.0 44.6 42 42 A M H X4 S+ 0 0 123 -3,-2.4 3,-0.8 -4,-0.5 -1,-0.2 0.857 98.4 58.0 -80.0 -36.5 -90.7 -28.5 47.9 43 43 A L H << S+ 0 0 130 -4,-1.0 -2,-0.2 -3,-0.6 -1,-0.2 0.851 107.1 51.8 -61.0 -32.2 -94.0 -29.6 46.4 44 44 A R T 3< S+ 0 0 174 -4,-1.5 2,-0.4 2,-0.0 -1,-0.3 0.655 83.1 114.8 -75.7 -19.6 -91.9 -32.5 44.8 45 45 A K < 0 0 159 -3,-0.8 -3,-0.1 -4,-0.3 -4,-0.0 -0.395 360.0 360.0 -59.0 111.1 -90.5 -33.3 48.3 46 46 A A 0 0 163 -2,-0.4 -1,-0.2 0, 0.0 -4,-0.0 0.544 360.0 360.0-132.8 360.0 -91.8 -36.7 49.1