==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-MAR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION, MEMBRANE PROTEIN 20-JAN-10 2KT7 . COMPND 2 MOLECULE: PUTATIVE PEPTIDOGLYCAN BOUND PROTEIN (LPXTG . SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; . AUTHOR A.ELETSKY,Y.HE,D.LEE,C.CICCOSANTI,H.JANJUA,T.B.ACTON,R.XIAO, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9015.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 49.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 7.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 17.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 34 A M 0 0 192 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 101.7 -23.8 0.5 -12.9 2 35 A D + 0 0 161 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.866 360.0 46.4 -86.5 -41.8 -23.9 -1.7 -9.8 3 36 A T S > S- 0 0 112 1,-0.1 3,-1.2 2,-0.1 -1,-0.1 0.909 76.6-166.1 -68.6 -45.8 -20.3 -1.5 -8.7 4 37 A N T 3 - 0 0 96 1,-0.2 3,-0.1 2,-0.1 -1,-0.1 0.733 67.6 -71.4 60.8 24.3 -20.0 2.3 -9.1 5 38 A N T 3 S+ 0 0 104 1,-0.2 2,-1.7 52,-0.1 53,-0.5 0.833 73.7 170.6 60.5 37.2 -16.2 1.9 -8.9 6 39 A F < + 0 0 96 -3,-1.2 2,-0.3 51,-0.2 -1,-0.2 -0.616 30.2 135.7 -72.9 87.1 -16.1 1.0 -5.2 7 40 A T - 0 0 19 -2,-1.7 52,-1.2 -3,-0.1 51,-0.7 -0.853 53.7-123.7-133.0 166.8 -12.4 -0.0 -5.2 8 41 A V E -Ab 26 59A 0 18,-2.2 18,-3.2 -2,-0.3 2,-0.5 -0.961 17.2-152.0-120.2 119.9 -9.3 0.4 -3.2 9 42 A K E -Ab 25 60A 80 50,-2.6 52,-1.6 -2,-0.5 2,-0.6 -0.784 11.4-149.9 -93.9 122.7 -6.1 1.9 -4.7 10 43 A V E -Ab 24 61A 0 14,-2.4 14,-2.2 -2,-0.5 2,-0.3 -0.820 11.4-167.4 -99.9 119.2 -2.8 0.7 -3.1 11 44 A E E - b 0 62A 29 50,-2.0 52,-2.3 -2,-0.6 2,-0.6 -0.814 10.7-151.8-105.2 144.5 0.2 3.1 -3.1 12 45 A Y E +Ab 21 63A 6 9,-0.6 8,-1.3 -2,-0.3 9,-1.2 -0.885 30.5 161.1-119.5 101.3 3.8 2.1 -2.2 13 46 A V E -Ab 19 64A 7 50,-2.4 52,-1.9 -2,-0.6 6,-0.3 -0.699 31.8-119.7-120.5 165.7 5.7 5.1 -0.8 14 47 A D E > - b 0 65A 13 4,-1.6 3,-1.4 50,-0.3 52,-0.2 -0.251 43.8 -88.7 -92.5-175.6 8.9 5.7 1.3 15 48 A A T 3 S+ 0 0 58 50,-1.4 51,-0.1 1,-0.3 49,-0.1 0.501 126.5 63.5 -72.7 -2.7 9.4 7.5 4.6 16 49 A D T 3 S- 0 0 114 49,-0.2 -1,-0.3 2,-0.2 3,-0.1 0.509 118.3-110.2 -95.9 -9.5 9.8 10.7 2.6 17 50 A G S < S+ 0 0 63 -3,-1.4 2,-0.4 1,-0.2 -2,-0.1 0.848 77.6 119.4 85.1 36.8 6.2 10.4 1.3 18 51 A A S S- 0 0 53 -4,-0.1 -4,-1.6 0, 0.0 2,-0.5 -0.993 70.4-110.9-135.0 128.1 6.8 9.6 -2.4 19 52 A E E -A 13 0A 110 -2,-0.4 -6,-0.3 -6,-0.3 4,-0.1 -0.387 31.5-178.2 -62.9 110.6 5.6 6.4 -4.2 20 53 A I E + 0 0 44 -8,-1.3 -7,-0.2 -2,-0.5 -1,-0.2 0.365 64.9 39.0 -89.5 4.2 8.8 4.4 -4.8 21 54 A A E S-A 12 0A 13 -9,-1.2 -9,-0.6 17,-0.1 2,-0.1 -0.978 95.9 -78.1-153.6 155.7 6.9 1.7 -6.6 22 55 A P E - 0 0 100 0, 0.0 2,-0.1 0, 0.0 -2,-0.1 -0.365 49.8-133.0 -59.3 135.7 4.0 0.9 -9.1 23 56 A S E - 0 0 33 -2,-0.1 2,-0.3 -12,-0.1 -12,-0.2 -0.295 14.8-144.9 -87.3 170.9 0.6 1.1 -7.4 24 57 A D E -A 10 0A 63 -14,-2.2 -14,-2.4 -2,-0.1 2,-0.4 -0.869 8.4-137.6-132.8 165.7 -2.4 -1.3 -7.6 25 58 A T E -A 9 0A 89 -2,-0.3 2,-0.9 -16,-0.3 -16,-0.3 -0.903 14.7-155.0-128.6 103.9 -6.2 -1.2 -7.7 26 59 A L E +A 8 0A 40 -18,-3.2 -18,-2.2 -2,-0.4 5,-0.1 -0.677 18.0 172.9 -81.4 105.6 -8.0 -3.8 -5.5 27 60 A T + 0 0 115 -2,-0.9 2,-0.2 -20,-0.2 -1,-0.2 0.392 46.1 110.7 -90.9 2.1 -11.5 -4.4 -7.0 28 61 A D S S- 0 0 100 2,-0.1 26,-0.2 1,-0.1 3,-0.1 -0.528 78.1-125.3 -78.7 143.2 -12.1 -7.3 -4.7 29 62 A Y S S+ 0 0 141 1,-0.3 25,-3.2 -2,-0.2 2,-1.0 0.868 111.1 53.0 -55.0 -38.3 -14.7 -7.0 -1.9 30 63 A H E S-D 53 0B 95 23,-0.2 2,-1.8 2,-0.1 -1,-0.3 -0.779 84.0-158.0 -97.4 88.4 -11.9 -8.0 0.5 31 64 A Y E +D 52 0B 23 -2,-1.0 21,-0.7 21,-0.8 2,-0.7 -0.491 22.0 171.8 -68.4 87.8 -9.2 -5.5 -0.4 32 65 A V E -D 51 0B 90 -2,-1.8 19,-0.2 19,-0.2 2,-0.2 -0.904 10.0-170.6-105.4 110.0 -6.3 -7.5 0.9 33 66 A S - 0 0 11 17,-1.3 17,-0.0 -2,-0.7 -2,-0.0 -0.497 9.6-152.4-100.2 166.8 -2.9 -6.0 -0.0 34 67 A T - 0 0 95 -2,-0.2 29,-0.1 29,-0.0 -2,-0.0 -0.998 21.9-110.8-139.6 141.6 0.7 -7.2 0.2 35 68 A P - 0 0 59 0, 0.0 2,-0.3 0, 0.0 -23,-0.0 -0.306 34.7-132.4 -66.2 155.5 4.1 -5.4 0.6 36 69 A K - 0 0 67 -2,-0.0 2,-1.6 2,-0.0 7,-0.0 -0.840 16.6-111.6-116.2 149.2 6.6 -5.5 -2.4 37 70 A D - 0 0 163 -2,-0.3 5,-0.1 5,-0.1 0, 0.0 -0.597 43.1-175.3 -76.9 86.0 10.3 -6.2 -2.7 38 71 A I > - 0 0 15 -2,-1.6 3,-2.3 3,-0.3 2,-0.4 -0.775 32.5-110.4 -88.9 124.6 11.5 -2.7 -3.6 39 72 A P T 3 S+ 0 0 119 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.330 103.2 4.9 -59.2 106.8 15.3 -2.5 -4.4 40 73 A G T 3 S+ 0 0 34 -2,-0.4 28,-2.2 1,-0.3 2,-0.3 0.672 113.2 99.6 92.4 18.5 16.9 -0.6 -1.5 41 74 A Y E < -C 67 0A 47 -3,-2.3 2,-0.4 26,-0.3 -3,-0.3 -0.999 50.0-162.0-139.2 141.7 13.7 -0.3 0.6 42 75 A K E -C 66 0A 119 24,-2.6 24,-3.3 -2,-0.3 2,-0.4 -0.938 38.0 -96.2-120.5 144.2 12.3 -2.2 3.7 43 76 A L E -C 65 0A 56 -2,-0.4 22,-0.3 22,-0.2 3,-0.1 -0.407 37.2-178.0 -62.2 113.9 8.7 -2.3 4.9 44 77 A R E - 0 0 147 20,-2.7 2,-0.3 -2,-0.4 21,-0.2 0.896 65.3 -15.4 -79.2 -45.3 8.5 0.4 7.7 45 78 A E E -C 64 0A 86 19,-1.3 19,-1.1 21,-0.0 -1,-0.3 -0.989 58.3-119.8-155.9 153.4 4.9 -0.3 8.6 46 79 A I - 0 0 101 -2,-0.3 4,-0.1 17,-0.1 17,-0.1 -0.893 47.8-108.8 -95.4 116.2 1.7 -2.0 7.4 47 80 A P > - 0 0 11 0, 0.0 3,-2.5 0, 0.0 4,-0.3 -0.074 18.6-122.0 -48.2 137.1 -1.1 0.7 7.0 48 81 A H T 3 S+ 0 0 187 1,-0.3 3,-0.1 2,-0.1 13,-0.0 0.555 115.9 43.9 -57.9 -8.4 -3.9 0.5 9.6 49 82 A N T 3 S+ 0 0 43 13,-0.1 -1,-0.3 1,-0.1 3,-0.1 -0.008 77.6 116.4-124.5 26.9 -6.3 0.1 6.6 50 83 A A S < S+ 0 0 3 -3,-2.5 -17,-1.3 1,-0.1 2,-0.4 0.809 79.0 26.7 -69.4 -32.9 -4.2 -2.4 4.5 51 84 A T E S+D 32 0B 86 -4,-0.3 2,-0.3 -19,-0.2 -19,-0.2 -0.994 83.3 79.2-136.6 139.0 -6.8 -5.2 4.7 52 85 A G E S-D 31 0B 21 -21,-0.7 -21,-0.8 -2,-0.4 2,-0.4 -0.993 72.6 -36.1 165.3-158.6 -10.6 -5.4 5.1 53 86 A N E -D 30 0B 67 -2,-0.3 2,-1.3 -23,-0.2 -23,-0.2 -0.830 52.4-117.8 -98.9 131.6 -14.0 -5.0 3.4 54 87 A I + 0 0 15 -25,-3.2 3,-0.1 -2,-0.4 -48,-0.1 -0.526 51.9 152.3 -67.2 94.9 -14.6 -2.4 0.6 55 88 A T + 0 0 92 -2,-1.3 2,-0.3 1,-0.1 -1,-0.2 0.592 62.1 30.6-100.0 -16.9 -17.3 -0.3 2.4 56 89 A D S S- 0 0 98 -3,-0.2 3,-0.4 -50,-0.0 2,-0.3 -0.894 78.2-113.3-137.9 166.8 -16.4 3.0 0.7 57 90 A T S S+ 0 0 74 -2,-0.3 -51,-0.2 1,-0.2 -49,-0.1 -0.731 90.3 31.1-103.4 153.5 -15.1 4.3 -2.7 58 91 A G S S+ 0 0 65 -51,-0.7 2,-0.3 -53,-0.5 -1,-0.2 0.785 78.0 161.4 73.1 28.6 -11.8 6.1 -3.3 59 92 A I E -b 8 0A 30 -52,-1.2 -50,-2.6 -3,-0.4 2,-0.5 -0.613 23.7-155.8 -82.7 139.5 -10.0 4.3 -0.5 60 93 A I E -b 9 0A 65 -2,-0.3 2,-0.7 -52,-0.2 -50,-0.2 -0.964 10.0-161.6-123.5 122.6 -6.2 4.3 -0.6 61 94 A V E -b 10 0A 0 -52,-1.6 -50,-2.0 -2,-0.5 2,-0.6 -0.889 17.5-171.4 -98.1 111.2 -3.9 1.7 1.1 62 95 A R E -b 11 0A 114 -2,-0.7 2,-0.3 -52,-0.2 -50,-0.2 -0.879 8.6-157.0-115.2 106.7 -0.4 3.3 1.4 63 96 A Y E -b 12 0A 3 -52,-2.3 -50,-2.4 -2,-0.6 2,-0.5 -0.614 12.0-142.9 -79.3 136.4 2.6 1.1 2.5 64 97 A I E -bC 13 45A 30 -19,-1.1 -20,-2.7 -2,-0.3 -19,-1.3 -0.870 15.8-167.4-103.5 129.4 5.5 3.0 4.0 65 98 A Y E -bC 14 43A 2 -52,-1.9 -50,-1.4 -2,-0.5 2,-0.4 -0.929 16.9-133.4-118.2 141.1 9.1 1.8 3.3 66 99 A D E - C 0 42A 84 -24,-3.3 -24,-2.6 -2,-0.4 2,-0.7 -0.746 32.5-111.8 -87.9 137.0 12.4 2.8 5.0 67 100 A K E - C 0 41A 98 -2,-0.4 2,-0.6 -26,-0.2 -26,-0.3 -0.576 28.8-143.6 -77.2 110.9 15.3 3.6 2.6 68 101 A I - 0 0 67 -28,-2.2 2,-1.1 -2,-0.7 3,-0.1 -0.617 4.9-155.7 -78.8 113.9 18.0 0.9 2.9 69 102 A I - 0 0 139 -2,-0.6 3,-0.2 1,-0.1 -1,-0.1 -0.760 69.4 -34.5 -90.5 93.6 21.5 2.3 2.5 70 103 A D S S- 0 0 93 -2,-1.1 -1,-0.1 1,-0.2 4,-0.0 0.343 73.5 -92.9 67.0 156.7 23.4 -0.8 1.3 71 104 A V - 0 0 116 -3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.409 52.3-113.1 -80.7 4.4 22.5 -4.4 2.5 72 105 A S S > S+ 0 0 56 -3,-0.2 3,-0.5 1,-0.1 2,-0.5 0.696 81.9 132.3 65.4 21.8 25.1 -4.2 5.3 73 106 A Y T 3 + 0 0 173 1,-0.2 -1,-0.1 2,-0.1 -2,-0.1 -0.378 22.7 102.2-107.3 50.9 26.8 -6.8 3.2 74 107 A V T 3 - 0 0 80 -2,-0.5 -1,-0.2 3,-0.2 4,-0.1 0.668 61.1-159.5 -97.2 -25.6 30.4 -5.5 3.0 75 108 A D S < S+ 0 0 77 -3,-0.5 3,-0.2 2,-0.2 -2,-0.1 0.288 72.6 90.7 64.0 -11.0 31.6 -8.1 5.6 76 109 A E S S+ 0 0 169 1,-0.2 2,-1.0 3,-0.1 -1,-0.1 0.932 83.8 49.1 -74.7 -49.4 34.7 -5.8 6.2 77 110 A T S S- 0 0 84 2,-0.1 -2,-0.2 1,-0.0 -1,-0.2 -0.780 121.8 -80.1 -97.0 94.0 33.0 -3.7 9.0 78 111 A G - 0 0 55 -2,-1.0 3,-0.1 -3,-0.2 -1,-0.0 -0.252 52.2-108.7 56.5-122.5 31.5 -6.2 11.5 79 112 A K S S+ 0 0 112 -2,-0.1 2,-0.8 -5,-0.0 -5,-0.1 0.067 96.1 44.1-168.3 -65.2 28.1 -7.6 10.3 80 113 A D + 0 0 154 1,-0.1 -8,-0.1 2,-0.0 -2,-0.0 -0.871 60.3 147.7-103.8 102.2 25.1 -6.3 12.2 81 114 A L + 0 0 103 -2,-0.8 -1,-0.1 -3,-0.1 -9,-0.0 0.542 25.0 121.6-112.7 -12.3 25.6 -2.5 12.6 82 115 A L - 0 0 132 1,-0.1 -2,-0.0 -10,-0.0 0, 0.0 -0.271 63.2-113.2 -66.3 136.4 22.1 -1.1 12.6 83 116 A P - 0 0 106 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.017 39.1 -89.0 -58.3 170.3 20.9 0.9 15.7 84 117 A V - 0 0 137 2,-0.0 2,-0.3 1,-0.0 0, 0.0 -0.260 25.5-144.4 -80.2 167.1 18.1 -0.2 18.0 85 118 A V + 0 0 146 -2,-0.0 2,-0.4 2,-0.0 -1,-0.0 -0.811 26.9 162.0-137.2 96.1 14.3 0.4 17.8 86 119 A E - 0 0 146 -2,-0.3 2,-0.5 0, 0.0 -2,-0.0 -0.961 45.2-106.3-117.7 132.1 12.4 0.9 21.1 87 120 A I + 0 0 139 -2,-0.4 2,-0.2 1,-0.0 -2,-0.0 -0.377 46.5 169.2 -68.8 109.7 8.9 2.5 21.1 88 121 A I + 0 0 111 -2,-0.5 -1,-0.0 0, 0.0 0, 0.0 -0.460 41.1 28.3-102.5-178.2 9.0 6.1 22.4 89 122 A N + 0 0 138 -2,-0.2 -2,-0.0 1,-0.1 0, 0.0 -0.126 68.2 106.3 65.3-163.3 6.3 8.9 22.4 90 123 A S + 0 0 93 1,-0.1 -1,-0.1 2,-0.0 0, 0.0 0.436 66.8 46.2 69.9 150.8 2.5 8.1 22.4 91 124 A E S S+ 0 0 179 2,-0.2 3,-0.2 1,-0.1 -1,-0.1 0.628 73.6 118.1 56.2 16.2 -0.0 8.5 25.3 92 125 A A S S+ 0 0 98 1,-0.3 2,-0.3 2,-0.1 -1,-0.1 0.470 78.0 46.9 -82.7 -3.9 1.5 11.9 25.9 93 126 A A + 0 0 98 1,-0.1 -1,-0.3 0, 0.0 -2,-0.2 -0.778 65.5 132.1-138.6 90.0 -2.0 13.2 25.1 94 127 A V - 0 0 100 -2,-0.3 2,-2.5 -3,-0.2 -1,-0.1 0.743 27.5-178.0-111.2 -37.3 -4.8 11.2 26.9 95 128 A L + 0 0 156 1,-0.2 -1,-0.1 0, 0.0 0, 0.0 -0.183 27.4 143.0 73.8 -48.6 -7.1 13.9 28.4 96 129 A E + 0 0 126 -2,-2.5 2,-0.3 1,-0.0 -1,-0.2 0.108 16.2 151.9 -41.8 119.3 -9.5 11.5 30.1 97 130 A H - 0 0 170 2,-0.0 2,-0.3 0, 0.0 -1,-0.0 -0.990 20.2-173.8-146.0 145.8 -10.7 12.8 33.5 98 131 A H - 0 0 153 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.852 8.0-160.7-147.2 107.7 -14.0 12.3 35.5 99 132 A H - 0 0 185 -2,-0.3 2,-0.5 1,-0.0 -2,-0.0 -0.694 22.2-133.0 -82.3 136.5 -15.0 14.0 38.7 100 133 A H - 0 0 151 -2,-0.3 -2,-0.0 1,-0.1 -1,-0.0 -0.806 0.8-144.0 -98.3 127.3 -17.7 12.1 40.7 101 134 A H 0 0 191 -2,-0.5 -1,-0.1 1,-0.2 -2,-0.0 0.905 360.0 360.0 -53.1 -50.4 -20.7 14.2 42.0 102 135 A H 0 0 216 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.787 360.0 360.0 -91.6 360.0 -20.9 12.1 45.3