==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 04-FEB-10 2KTM . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: OVIS ARIES; . AUTHOR A.PASTORE,M.ADROVER,K.PAUWELS,C.DE CHIARA,S.PRIGENT,H.REZEAI . 68 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4855.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 85.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 70.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 167 A R 0 0 154 0, 0.0 2,-0.6 0, 0.0 3,-0.3 0.000 360.0 360.0 360.0 124.9 20.5 4.4 2.0 2 168 A P + 0 0 100 0, 0.0 3,-0.2 0, 0.0 60,-0.0 -0.046 360.0 101.3 -84.1 36.1 17.9 1.6 1.7 3 169 A V >> + 0 0 3 -2,-0.6 3,-2.3 1,-0.2 4,-0.7 -0.014 31.2 131.6-106.2 27.5 15.0 4.0 1.1 4 170 A D H 3> + 0 0 89 1,-0.3 4,-3.0 -3,-0.3 -1,-0.2 0.588 48.1 94.4 -59.0 -7.5 15.0 3.4 -2.6 5 171 A Q H 34 S+ 0 0 55 -3,-0.2 -1,-0.3 1,-0.2 7,-0.1 0.759 93.3 36.4 -54.3 -29.2 11.3 3.0 -2.1 6 172 A Y H X4 S+ 0 0 84 -3,-2.3 3,-1.8 2,-0.1 -1,-0.2 0.838 112.9 57.7 -88.9 -43.0 11.0 6.7 -3.0 7 173 A S H 3< S+ 0 0 72 -4,-0.7 3,-0.2 1,-0.3 -2,-0.2 0.857 113.4 39.1 -53.5 -39.5 13.7 6.6 -5.6 8 174 A N T >X S+ 0 0 59 -4,-3.0 4,-3.0 1,-0.2 3,-0.8 0.052 81.1 143.7-100.7 27.1 11.9 3.9 -7.6 9 175 A Q H <> + 0 0 62 -3,-1.8 4,-2.9 1,-0.3 -1,-0.2 0.744 66.2 45.4 -40.8 -55.3 8.5 5.5 -6.9 10 176 A N H 3> S+ 0 0 110 -3,-0.2 4,-1.8 1,-0.2 -1,-0.3 0.913 119.6 40.7 -61.1 -45.3 6.8 4.8 -10.2 11 177 A N H <> S+ 0 0 105 -3,-0.8 4,-2.8 2,-0.2 5,-0.3 0.856 113.7 55.5 -70.6 -35.5 7.9 1.2 -10.4 12 178 A F H X>S+ 0 0 18 -4,-3.0 4,-2.4 2,-0.2 5,-0.8 0.926 105.7 51.3 -61.1 -47.1 7.3 0.8 -6.7 13 179 A V H X5S+ 0 0 40 -4,-2.9 4,-1.2 -5,-0.2 5,-0.4 0.937 114.1 43.5 -57.3 -47.3 3.7 1.9 -7.2 14 180 A H H X5S+ 0 0 139 -4,-1.8 4,-1.3 -5,-0.2 -2,-0.2 0.968 124.4 32.9 -64.0 -52.1 3.0 -0.6 -10.0 15 181 A D H X5S+ 0 0 109 -4,-2.8 4,-2.5 2,-0.2 5,-0.2 0.966 123.2 41.3 -72.8 -55.5 4.8 -3.6 -8.3 16 182 A a H X5S+ 0 0 21 -4,-2.4 4,-3.0 -5,-0.3 5,-0.3 0.920 114.5 50.9 -63.4 -46.8 4.1 -3.0 -4.6 17 183 A V H XX S+ 0 0 83 -4,-2.8 4,-2.4 -5,-0.3 3,-0.6 0.961 113.2 41.6 -59.2 -53.8 -6.2 -12.8 -0.5 27 193 A T H 3X S+ 0 0 84 -4,-2.5 4,-1.1 1,-0.3 -2,-0.2 0.916 115.7 50.7 -61.0 -41.8 -7.3 -11.9 3.0 28 194 A T H 3< S+ 0 0 15 -4,-2.7 6,-0.9 -5,-0.2 7,-0.5 0.663 110.5 51.2 -72.4 -15.5 -10.6 -10.7 1.7 29 195 A T H XX S+ 0 0 49 -4,-1.1 4,-2.7 -3,-0.6 3,-1.1 0.841 109.8 47.5 -84.5 -37.0 -10.9 -13.9 -0.2 30 196 A T H 3< S+ 0 0 102 -4,-2.4 -2,-0.2 1,-0.3 -3,-0.2 0.620 92.5 80.4 -80.6 -9.8 -10.2 -16.0 3.0 31 197 A K T 3< S- 0 0 122 -4,-1.1 -1,-0.3 -5,-0.2 -2,-0.1 0.458 138.0 -57.5 -69.8 -0.1 -12.8 -13.8 4.8 32 198 A G T <4 S- 0 0 45 -3,-1.1 -2,-0.2 2,-0.0 -3,-0.1 0.501 76.3 -93.5 129.1 16.7 -15.4 -16.0 3.2 33 199 A E S < S+ 0 0 131 -4,-2.7 -4,-0.2 -6,-0.2 -3,-0.1 0.924 91.5 111.5 43.2 72.8 -14.7 -15.6 -0.5 34 200 A N + 0 0 110 -6,-0.9 -5,-0.1 2,-0.1 -1,-0.1 0.559 22.7 125.2-129.8 -64.6 -17.1 -12.7 -1.3 35 201 A F > - 0 0 62 -7,-0.5 4,-0.6 4,-0.1 3,-0.1 -0.112 42.2-171.9 42.1-105.3 -15.2 -9.5 -2.1 36 202 A T H >> - 0 0 75 2,-0.2 4,-3.2 1,-0.1 3,-0.7 0.125 48.0 -74.1 95.6 150.4 -16.6 -8.6 -5.5 37 203 A E H 3> S+ 0 0 134 1,-0.3 4,-3.2 2,-0.2 5,-0.4 0.825 134.2 59.3 -47.8 -32.4 -15.3 -5.8 -7.8 38 204 A T H 3> S+ 0 0 107 2,-0.2 4,-1.8 1,-0.2 -1,-0.3 0.963 114.7 32.6 -57.4 -54.4 -17.1 -3.4 -5.4 39 205 A D H S+ 0 0 0 -4,-2.0 4,-1.9 1,-0.2 5,-1.7 0.891 116.3 43.1 -61.2 -41.2 11.2 8.3 3.0 60 226 A Q H <5S+ 0 0 73 -4,-2.8 -1,-0.2 6,-0.3 -2,-0.2 0.842 105.7 66.6 -70.8 -33.1 10.5 9.4 6.5 61 227 A A H <5S+ 0 0 58 -4,-2.1 -2,-0.2 -5,-0.3 -1,-0.2 0.926 121.1 16.9 -54.7 -50.8 12.6 6.5 7.8 62 228 A Y H <5S- 0 0 133 -4,-1.9 -1,-0.2 -5,-0.1 -2,-0.2 0.733 102.3-125.7 -90.0 -22.5 15.8 8.0 6.4 63 229 A Y T <5 + 0 0 177 -4,-1.9 -3,-0.2 -5,-0.4 -4,-0.1 0.888 55.5 154.3 68.4 46.2 14.3 11.5 5.9 64 230 A Q S