==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 25-NOV-09 3KTP . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.KOZLOV,K.GEHRING . 94 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5804.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 67.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 52 55.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 544 A P 0 0 137 0, 0.0 2,-0.9 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 157.3 -3.4 -18.1 7.4 2 545 A L - 0 0 26 49,-0.1 2,-0.2 4,-0.1 52,-0.1 -0.853 360.0-176.6 -94.8 101.1 -4.4 -20.6 4.7 3 546 A T > - 0 0 62 -2,-0.9 4,-2.7 1,-0.1 5,-0.2 -0.535 40.1-108.8 -93.3 163.2 -2.1 -23.5 5.3 4 547 A A H > S+ 0 0 69 1,-0.2 4,-2.4 2,-0.2 5,-0.1 0.876 121.5 49.3 -56.9 -41.1 -1.9 -26.8 3.2 5 548 A S H > S+ 0 0 84 2,-0.2 4,-1.1 1,-0.2 -1,-0.2 0.887 110.8 49.6 -67.3 -40.0 -3.4 -28.7 6.1 6 549 A M H 4 S+ 0 0 94 2,-0.2 3,-0.4 1,-0.2 4,-0.4 0.924 114.2 45.1 -63.5 -46.6 -6.3 -26.2 6.5 7 550 A L H >< S+ 0 0 7 -4,-2.7 3,-1.8 1,-0.2 -2,-0.2 0.937 109.7 55.5 -60.5 -46.6 -7.0 -26.3 2.8 8 551 A A H 3< S+ 0 0 72 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.711 98.3 62.9 -62.9 -23.9 -6.8 -30.1 2.7 9 552 A S T 3< S+ 0 0 108 -4,-1.1 -1,-0.3 -3,-0.4 -2,-0.2 0.603 90.4 85.9 -77.6 -13.6 -9.4 -30.5 5.4 10 553 A A S < S- 0 0 11 -3,-1.8 5,-0.0 -4,-0.4 -3,-0.0 -0.571 87.7-103.2 -90.6 150.5 -12.1 -28.8 3.2 11 554 A P > - 0 0 75 0, 0.0 4,-2.1 0, 0.0 3,-0.3 -0.306 45.1 -98.4 -63.6 158.4 -14.3 -30.6 0.6 12 555 A P H > S+ 0 0 106 0, 0.0 4,-1.7 0, 0.0 5,-0.1 0.828 121.2 46.4 -51.4 -44.2 -13.3 -30.0 -3.0 13 556 A Q H > S+ 0 0 101 1,-0.2 4,-2.0 2,-0.2 78,-0.2 0.901 112.1 51.5 -69.4 -38.5 -15.7 -27.2 -3.9 14 557 A E H > S+ 0 0 104 -3,-0.3 4,-2.9 2,-0.2 -1,-0.2 0.861 104.5 58.3 -63.7 -37.1 -14.9 -25.3 -0.6 15 558 A Q H X S+ 0 0 32 -4,-2.1 4,-2.5 2,-0.2 -1,-0.2 0.931 106.8 47.0 -58.9 -46.0 -11.2 -25.6 -1.5 16 559 A K H X S+ 0 0 36 -4,-1.7 4,-2.9 2,-0.2 -2,-0.2 0.920 113.1 49.4 -61.4 -42.6 -11.8 -23.7 -4.7 17 560 A Q H X S+ 0 0 32 -4,-2.0 4,-2.6 2,-0.2 -2,-0.2 0.917 110.9 49.3 -62.6 -43.8 -13.9 -21.1 -2.9 18 561 A M H X S+ 0 0 40 -4,-2.9 4,-1.4 2,-0.2 -1,-0.2 0.920 113.7 45.9 -61.3 -46.1 -11.2 -20.6 -0.2 19 562 A L H X S+ 0 0 0 -4,-2.5 4,-2.7 -5,-0.2 3,-0.3 0.940 113.2 50.8 -62.3 -45.7 -8.5 -20.2 -2.8 20 563 A G H X S+ 0 0 0 -4,-2.9 4,-2.7 1,-0.2 -2,-0.2 0.895 107.8 51.2 -58.5 -44.2 -10.6 -17.8 -4.9 21 564 A E H < S+ 0 0 63 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.805 114.8 43.6 -68.4 -28.7 -11.5 -15.6 -1.9 22 565 A R H X S+ 0 0 122 -4,-1.4 4,-0.7 -3,-0.3 -2,-0.2 0.848 116.4 46.5 -80.8 -38.4 -7.8 -15.3 -1.0 23 566 A L H X S+ 0 0 0 -4,-2.7 4,-2.4 -5,-0.2 3,-0.4 0.893 100.3 68.9 -68.5 -42.8 -6.6 -14.7 -4.6 24 567 A F H X S+ 0 0 26 -4,-2.7 4,-3.0 1,-0.2 5,-0.2 0.883 99.0 44.4 -50.5 -54.5 -9.3 -12.2 -5.6 25 568 A P H > S+ 0 0 68 0, 0.0 4,-1.3 0, 0.0 -1,-0.2 0.870 114.2 51.4 -64.6 -31.9 -8.1 -9.2 -3.4 26 569 A L H X S+ 0 0 80 -4,-0.7 4,-0.6 -3,-0.4 -2,-0.2 0.901 115.3 41.6 -65.2 -41.8 -4.5 -9.8 -4.4 27 570 A I H >X S+ 0 0 0 -4,-2.4 4,-2.9 1,-0.2 3,-1.0 0.874 108.5 60.2 -73.0 -36.6 -5.4 -9.8 -8.1 28 571 A Q H 3< S+ 0 0 87 -4,-3.0 -1,-0.2 -5,-0.3 -2,-0.2 0.793 97.0 61.1 -62.9 -30.4 -7.8 -6.9 -7.7 29 572 A A H 3< S+ 0 0 87 -4,-1.3 -1,-0.3 -5,-0.2 -2,-0.2 0.826 116.0 32.3 -62.0 -33.9 -4.9 -4.8 -6.5 30 573 A M H << S+ 0 0 51 -3,-1.0 -2,-0.2 -4,-0.6 -1,-0.2 0.788 135.1 26.2 -91.8 -34.5 -3.2 -5.3 -9.9 31 574 A H X - 0 0 48 -4,-2.9 4,-1.5 1,-0.1 -1,-0.2 -0.753 67.0-175.9-135.6 81.9 -6.4 -5.5 -12.0 32 575 A P T 4 S+ 0 0 94 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.765 86.0 23.7 -54.1 -32.7 -9.2 -3.5 -10.4 33 576 A T T 4 S+ 0 0 136 2,-0.1 3,-0.4 1,-0.1 4,-0.3 0.764 123.0 49.6-106.0 -30.2 -11.9 -4.5 -13.0 34 577 A L T > S+ 0 0 51 1,-0.2 4,-2.6 2,-0.1 3,-0.3 0.495 79.7 101.0 -88.8 -3.9 -10.6 -7.8 -14.5 35 578 A A H X S+ 0 0 1 -4,-1.5 4,-2.9 1,-0.2 5,-0.2 0.837 78.7 52.8 -50.9 -42.3 -9.9 -9.5 -11.2 36 579 A G H > S+ 0 0 3 -3,-0.4 49,-2.3 2,-0.2 4,-2.1 0.918 113.1 42.4 -62.7 -46.3 -13.1 -11.6 -11.3 37 580 A K H > S+ 0 0 69 -3,-0.3 4,-2.0 -4,-0.3 -2,-0.2 0.921 116.3 48.5 -66.1 -43.4 -12.4 -13.0 -14.7 38 581 A I H X S+ 0 0 0 -4,-2.6 4,-2.6 2,-0.2 -2,-0.2 0.922 111.3 49.8 -64.0 -44.8 -8.7 -13.6 -13.9 39 582 A T H X S+ 0 0 0 -4,-2.9 4,-2.0 -5,-0.3 -1,-0.2 0.937 110.3 50.9 -59.3 -46.2 -9.5 -15.3 -10.6 40 583 A G H < S+ 0 0 1 -4,-2.1 4,-0.3 -5,-0.2 -1,-0.2 0.867 111.0 49.1 -58.8 -38.7 -12.0 -17.6 -12.4 41 584 A M H >< S+ 0 0 15 -4,-2.0 3,-1.1 1,-0.2 -1,-0.2 0.913 111.6 48.4 -64.9 -44.8 -9.4 -18.5 -15.0 42 585 A L H >< S+ 0 0 6 -4,-2.6 3,-2.2 1,-0.2 -2,-0.2 0.799 94.5 75.2 -68.3 -28.7 -6.8 -19.3 -12.3 43 586 A L T 3< S+ 0 0 0 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.604 82.2 68.1 -65.1 -11.3 -9.1 -21.5 -10.3 44 587 A E T < S+ 0 0 130 -3,-1.1 -1,-0.3 -4,-0.3 -2,-0.1 0.601 84.3 97.5 -80.5 -9.0 -8.8 -24.3 -12.8 45 588 A I S < S- 0 0 27 -3,-2.2 5,-0.0 1,-0.2 -3,-0.0 -0.308 93.9 -76.2 -73.1 157.6 -5.2 -24.7 -11.8 46 589 A D > - 0 0 112 1,-0.1 4,-2.1 -2,-0.0 3,-0.3 -0.287 39.2-127.1 -53.4 137.8 -4.0 -27.4 -9.2 47 590 A N H > S+ 0 0 36 1,-0.2 4,-2.0 2,-0.2 -1,-0.1 0.839 107.9 55.3 -60.2 -36.9 -4.8 -26.3 -5.6 48 591 A S H > S+ 0 0 91 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.893 108.8 47.9 -63.9 -40.4 -1.2 -26.8 -4.5 49 592 A E H > S+ 0 0 77 -3,-0.3 4,-1.9 2,-0.2 -2,-0.2 0.888 109.2 53.2 -67.7 -40.6 0.1 -24.4 -7.1 50 593 A L H X S+ 0 0 0 -4,-2.1 4,-1.2 1,-0.2 -2,-0.2 0.867 105.6 55.0 -61.2 -37.6 -2.6 -21.9 -6.2 51 594 A L H X S+ 0 0 32 -4,-2.0 4,-0.8 1,-0.2 3,-0.4 0.903 107.3 49.7 -59.1 -43.9 -1.4 -22.1 -2.6 52 595 A H H >X S+ 0 0 79 -4,-1.5 4,-2.0 1,-0.2 3,-0.7 0.864 104.8 58.0 -63.6 -38.0 2.1 -21.2 -3.7 53 596 A M H 3< S+ 0 0 3 -4,-1.9 7,-0.4 1,-0.2 -1,-0.2 0.799 100.7 57.7 -63.4 -28.8 0.8 -18.3 -5.7 54 597 A L H 3< S+ 0 0 44 -4,-1.2 -1,-0.2 -3,-0.4 -2,-0.2 0.786 112.3 40.2 -70.3 -28.3 -0.6 -16.9 -2.5 55 598 A E H << S+ 0 0 145 -4,-0.8 -2,-0.2 -3,-0.7 -1,-0.2 0.749 114.0 55.6 -90.3 -27.0 2.8 -16.9 -0.9 56 599 A S X - 0 0 27 -4,-2.0 4,-2.3 1,-0.1 -1,-0.2 -0.891 57.5-169.8-117.5 102.7 4.8 -15.7 -3.9 57 600 A P H > S+ 0 0 100 0, 0.0 4,-3.1 0, 0.0 5,-0.2 0.854 91.8 54.7 -53.4 -39.8 3.8 -12.3 -5.6 58 601 A E H > S+ 0 0 130 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.916 108.9 47.5 -60.7 -46.2 6.1 -13.1 -8.6 59 602 A S H > S+ 0 0 27 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.902 114.5 46.8 -62.3 -42.9 4.5 -16.4 -9.2 60 603 A L H X S+ 0 0 7 -4,-2.3 4,-2.7 -7,-0.4 -2,-0.2 0.949 112.1 49.3 -62.8 -50.0 1.0 -14.9 -9.0 61 604 A R H X S+ 0 0 141 -4,-3.1 4,-2.5 1,-0.2 -2,-0.2 0.875 109.1 53.7 -58.7 -39.6 1.9 -11.9 -11.3 62 605 A S H X S+ 0 0 55 -4,-2.2 4,-1.7 2,-0.2 -1,-0.2 0.920 112.9 42.2 -61.5 -45.2 3.4 -14.3 -13.8 63 606 A K H X S+ 0 0 55 -4,-1.7 4,-2.3 2,-0.2 -2,-0.2 0.848 111.9 55.1 -72.4 -36.2 0.2 -16.4 -14.0 64 607 A V H X S+ 0 0 0 -4,-2.7 4,-2.2 2,-0.2 -2,-0.2 0.919 107.6 49.9 -59.9 -45.6 -2.0 -13.3 -14.0 65 608 A D H X S+ 0 0 93 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.906 110.1 50.5 -59.7 -43.3 -0.1 -12.0 -17.0 66 609 A E H X S+ 0 0 99 -4,-1.7 4,-2.3 1,-0.2 -1,-0.2 0.905 109.0 52.4 -60.3 -42.7 -0.6 -15.3 -18.8 67 610 A A H X S+ 0 0 4 -4,-2.3 4,-2.7 2,-0.2 -2,-0.2 0.895 106.8 51.5 -61.5 -43.4 -4.3 -15.2 -18.0 68 611 A V H X S+ 0 0 21 -4,-2.2 4,-2.7 2,-0.2 -1,-0.2 0.936 109.8 50.3 -60.0 -45.1 -4.7 -11.7 -19.5 69 612 A A H X S+ 0 0 56 -4,-2.1 4,-1.9 1,-0.2 -2,-0.2 0.916 112.2 47.6 -58.5 -44.5 -3.0 -12.9 -22.7 70 613 A V H X S+ 0 0 74 -4,-2.3 4,-2.7 2,-0.2 -1,-0.2 0.905 111.4 50.4 -63.1 -42.9 -5.4 -15.9 -22.9 71 614 A L H X S+ 0 0 4 -4,-2.7 4,-2.7 2,-0.2 -2,-0.2 0.911 108.4 51.9 -63.9 -42.6 -8.4 -13.6 -22.2 72 615 A Q H X S+ 0 0 125 -4,-2.7 4,-1.0 1,-0.2 -1,-0.2 0.890 112.3 46.5 -60.5 -40.3 -7.4 -11.2 -25.0 73 616 A A H X S+ 0 0 39 -4,-1.9 4,-1.4 -5,-0.2 3,-0.3 0.908 112.2 50.6 -66.4 -43.4 -7.1 -14.2 -27.4 74 617 A H H X S+ 0 0 45 -4,-2.7 4,-2.5 1,-0.2 3,-0.2 0.896 107.7 52.3 -62.1 -42.0 -10.4 -15.6 -26.3 75 618 A Q H < S+ 0 0 109 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.779 107.7 53.7 -64.7 -28.0 -12.2 -12.2 -26.8 76 619 A A H < S+ 0 0 84 -4,-1.0 -1,-0.2 -3,-0.3 -2,-0.2 0.816 112.8 41.7 -74.3 -34.1 -10.8 -12.1 -30.3 77 620 A K H < 0 0 162 -4,-1.4 -2,-0.2 -3,-0.2 -1,-0.1 0.833 360.0 360.0 -82.6 -37.5 -12.2 -15.5 -31.3 78 621 A E < 0 0 180 -4,-2.5 -3,-0.2 -5,-0.2 -2,-0.2 0.991 360.0 360.0 -69.2 360.0 -15.5 -15.0 -29.6 79 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 80 1384 B N 0 0 147 0, 0.0 4,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 159.4 -19.7 -17.6 -21.0 81 1385 B W + 0 0 99 2,-0.1 -44,-0.0 -7,-0.1 -40,-0.0 -0.745 360.0 39.6 -97.3 141.5 -16.0 -18.3 -20.4 82 1386 B P S S- 0 0 9 0, 0.0 2,-0.9 0, 0.0 -41,-0.1 0.573 84.4-127.3 -80.7 159.1 -14.3 -17.6 -18.1 83 1387 B P - 0 0 27 0, 0.0 10,-0.2 0, 0.0 -2,-0.1 -0.625 34.5-130.5 -71.3 104.8 -16.6 -18.3 -15.1 84 1388 B E - 0 0 60 -2,-0.9 8,-0.6 -4,-0.2 2,-0.5 -0.275 10.8-132.5 -64.3 137.6 -16.2 -15.0 -13.3 85 1389 B F - 0 0 1 -49,-2.3 -46,-0.1 6,-0.1 -45,-0.1 -0.807 21.6-173.9 -91.4 129.0 -15.4 -15.1 -9.6 86 1390 B H > - 0 0 73 -2,-0.5 3,-2.5 3,-0.4 -65,-0.1 -0.982 34.3-108.7-124.0 116.1 -17.6 -12.9 -7.3 87 1391 B P T 3 S+ 0 0 69 0, 0.0 -70,-0.0 0, 0.0 -51,-0.0 -0.135 101.5 8.2 -48.3 125.4 -16.6 -12.6 -3.6 88 1392 B G T 3 S+ 0 0 66 1,-0.2 -71,-0.0 -71,-0.1 -3,-0.0 0.338 104.0 107.6 87.4 -7.2 -19.1 -14.5 -1.4 89 1393 B V S < S- 0 0 76 -3,-2.5 -3,-0.4 -72,-0.1 -1,-0.2 -0.896 84.5-103.4-102.9 128.6 -21.0 -16.0 -4.3 90 1394 B P - 0 0 102 0, 0.0 2,-0.1 0, 0.0 -1,-0.0 -0.305 51.8 -99.3 -52.4 127.5 -20.6 -19.7 -4.9 91 1395 B W > - 0 0 22 -78,-0.2 3,-1.9 1,-0.2 -6,-0.1 -0.300 21.0-142.4 -60.7 126.1 -18.2 -19.9 -7.9 92 1396 B K T 3 S+ 0 0 152 -8,-0.6 -1,-0.2 1,-0.3 -8,-0.1 0.717 97.3 68.7 -52.9 -28.4 -20.0 -20.6 -11.2 93 1397 B G T 3 S+ 0 0 28 -10,-0.2 -1,-0.3 -9,-0.1 2,-0.2 0.619 74.6 106.7 -73.2 -13.7 -17.1 -22.8 -12.3 94 1398 B L < 0 0 40 -3,-1.9 -81,-0.0 -81,-0.0 0, 0.0 -0.494 360.0 360.0 -70.7 130.8 -18.0 -25.5 -9.7 95 1399 B Q 0 0 216 -2,-0.2 -2,-0.1 0, 0.0 -3,-0.0 -0.960 360.0 360.0-115.4 360.0 -19.5 -28.6 -11.1