==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 25-NOV-09 3KTR . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.KOZLOV,K.GEHRING . 97 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6226.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 64.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 55.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 543 A S 0 0 136 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 90.1 -14.9 -1.7 -20.2 2 544 A P - 0 0 109 0, 0.0 2,-0.4 0, 0.0 21,-0.0 -0.250 360.0-101.4 -68.2 158.8 -12.6 -1.8 -17.1 3 545 A L - 0 0 26 17,-0.1 2,-0.3 16,-0.1 3,-0.0 -0.702 43.9-167.9 -80.4 128.2 -9.9 0.7 -16.5 4 546 A T > - 0 0 78 -2,-0.4 4,-2.1 1,-0.1 3,-0.2 -0.840 34.4-116.1-119.4 158.1 -6.5 -0.7 -17.3 5 547 A A H > S+ 0 0 59 -2,-0.3 4,-1.4 1,-0.2 -1,-0.1 0.805 118.7 52.6 -59.4 -33.8 -2.9 0.5 -16.6 6 548 A S H > S+ 0 0 91 2,-0.2 4,-0.8 1,-0.2 -1,-0.2 0.842 105.3 54.2 -69.5 -38.2 -2.3 0.9 -20.4 7 549 A M H >4 S+ 0 0 71 1,-0.2 3,-1.0 2,-0.2 -2,-0.2 0.940 110.1 47.7 -55.8 -49.2 -5.5 3.1 -20.6 8 550 A L H >< S+ 0 0 6 -4,-2.1 3,-1.8 1,-0.3 -2,-0.2 0.834 102.2 63.2 -63.2 -35.5 -4.1 5.4 -17.9 9 551 A A H 3< S+ 0 0 77 -4,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.758 93.6 64.1 -62.0 -24.7 -0.7 5.5 -19.7 10 552 A S T << S+ 0 0 110 -3,-1.0 -1,-0.3 -4,-0.8 -2,-0.2 0.519 98.5 74.3 -74.1 -4.4 -2.4 7.2 -22.6 11 553 A A S < S- 0 0 14 -3,-1.8 5,-0.0 -4,-0.1 -3,-0.0 -0.833 85.2-104.1-121.8 147.5 -3.3 10.2 -20.4 12 554 A P >> - 0 0 70 0, 0.0 4,-2.5 0, 0.0 3,-0.6 -0.308 46.5-106.0 -51.3 144.1 -1.8 13.3 -18.8 13 555 A P H 3> S+ 0 0 99 0, 0.0 4,-1.7 0, 0.0 5,-0.1 0.828 120.0 51.0 -42.9 -44.9 -1.3 12.9 -15.0 14 556 A Q H 3> S+ 0 0 163 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.907 111.4 48.0 -68.4 -34.9 -4.2 15.1 -14.0 15 557 A E H <> S+ 0 0 114 -3,-0.6 4,-2.8 1,-0.2 -1,-0.2 0.883 105.8 58.7 -71.1 -37.3 -6.6 13.2 -16.4 16 558 A Q H X S+ 0 0 38 -4,-2.5 4,-2.6 1,-0.2 -1,-0.2 0.907 104.4 51.2 -56.7 -41.8 -5.3 9.9 -14.9 17 559 A K H X S+ 0 0 46 -4,-1.7 4,-2.8 1,-0.2 -1,-0.2 0.920 111.3 47.6 -59.8 -44.4 -6.5 11.1 -11.4 18 560 A Q H X S+ 0 0 79 -4,-1.6 4,-2.3 2,-0.2 -2,-0.2 0.906 111.6 50.2 -64.2 -42.6 -9.9 12.0 -12.8 19 561 A M H X S+ 0 0 47 -4,-2.8 4,-1.1 2,-0.2 -1,-0.2 0.904 112.5 46.7 -62.4 -44.6 -10.1 8.6 -14.6 20 562 A L H >X S+ 0 0 0 -4,-2.6 4,-2.4 1,-0.2 3,-0.6 0.924 111.2 52.2 -62.3 -44.3 -9.2 6.8 -11.4 21 563 A G H 3X S+ 0 0 0 -4,-2.8 4,-3.0 1,-0.2 -2,-0.2 0.871 102.5 59.7 -61.7 -38.3 -11.7 8.8 -9.4 22 564 A E H 3< S+ 0 0 37 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.847 111.6 39.9 -58.3 -35.6 -14.5 8.0 -11.9 23 565 A R H X S+ 0 0 0 -4,-2.4 4,-2.6 1,-0.2 3,-0.5 0.849 98.2 71.4 -71.7 -35.8 -13.6 4.7 -7.4 25 567 A F H 3X S+ 0 0 1 -4,-3.0 4,-3.4 1,-0.3 5,-0.3 0.888 94.3 49.6 -56.6 -51.5 -16.4 7.0 -6.8 26 568 A P H 3> S+ 0 0 35 0, 0.0 4,-1.5 0, 0.0 -1,-0.3 0.858 114.3 48.2 -56.8 -33.9 -19.4 4.7 -7.2 27 569 A L H S+ 0 0 29 1,-0.2 4,-2.9 -7,-0.1 3,-0.4 0.451 86.2 111.5 -89.6 1.2 -19.0 11.8 2.4 36 578 A A H X S+ 0 0 1 -4,-0.9 4,-2.7 -3,-0.3 5,-0.2 0.804 75.2 46.1 -54.5 -47.4 -18.3 10.3 -1.1 37 579 A G H > S+ 0 0 16 -3,-0.3 54,-2.2 -4,-0.3 4,-2.2 0.921 118.4 43.5 -60.6 -42.2 -17.0 13.3 -2.9 38 580 A K H > S+ 0 0 39 -3,-0.4 4,-2.2 -4,-0.2 -2,-0.2 0.922 113.9 49.1 -72.2 -43.2 -14.7 14.3 -0.1 39 581 A I H X S+ 0 0 0 -4,-2.9 4,-2.3 2,-0.2 -2,-0.2 0.924 111.3 49.9 -60.4 -46.6 -13.5 10.8 0.6 40 582 A T H X S+ 0 0 0 -4,-2.7 4,-2.3 -5,-0.3 -2,-0.2 0.939 109.6 52.1 -57.2 -46.6 -12.7 10.2 -3.1 41 583 A G H < S+ 0 0 7 -4,-2.2 4,-0.4 -5,-0.2 48,-0.2 0.889 109.3 50.4 -54.1 -44.4 -10.8 13.5 -3.2 42 584 A M H >< S+ 0 0 0 -4,-2.2 3,-1.3 1,-0.2 43,-0.3 0.937 110.8 47.7 -61.3 -44.4 -8.8 12.4 -0.1 43 585 A L H >< S+ 0 0 0 -4,-2.3 3,-2.1 1,-0.3 -2,-0.2 0.811 97.4 71.0 -69.8 -30.5 -7.9 9.1 -1.7 44 586 A L T 3< S+ 0 0 23 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.650 83.0 72.1 -64.2 -11.8 -6.9 10.7 -5.0 45 587 A E T < S+ 0 0 81 -3,-1.3 -1,-0.3 -4,-0.4 -2,-0.2 0.707 81.5 95.5 -67.6 -24.1 -3.8 12.1 -3.2 46 588 A I S < S- 0 0 21 -3,-2.1 5,-0.1 -4,-0.2 -3,-0.0 -0.368 94.6 -86.5 -68.9 149.3 -2.4 8.5 -3.2 47 589 A D > - 0 0 128 1,-0.1 4,-2.2 3,-0.1 3,-0.2 -0.196 37.4-119.0 -56.0 144.5 0.0 7.4 -6.0 48 590 A N H > S+ 0 0 33 1,-0.2 4,-2.4 2,-0.2 5,-0.1 0.834 112.0 55.5 -60.1 -36.9 -1.8 6.2 -9.1 49 591 A S H > S+ 0 0 99 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.909 109.4 47.4 -60.6 -41.2 -0.3 2.6 -8.9 50 592 A E H > S+ 0 0 95 -3,-0.2 4,-2.2 2,-0.2 -2,-0.2 0.877 109.7 53.4 -67.2 -37.6 -1.6 2.3 -5.4 51 593 A L H X S+ 0 0 0 -4,-2.2 4,-2.1 2,-0.2 -2,-0.2 0.906 106.7 52.2 -63.5 -41.8 -5.0 3.6 -6.6 52 594 A L H X S+ 0 0 29 -4,-2.4 4,-1.4 2,-0.2 -2,-0.2 0.913 108.6 51.2 -55.8 -44.8 -5.0 0.9 -9.3 53 595 A H H X S+ 0 0 90 -4,-2.0 4,-1.4 1,-0.2 3,-0.3 0.911 108.0 52.5 -58.9 -41.4 -4.3 -1.7 -6.6 54 596 A M H < S+ 0 0 5 -4,-2.2 7,-0.5 1,-0.2 3,-0.2 0.890 106.3 52.9 -64.4 -36.1 -7.2 -0.3 -4.6 55 597 A L H < S+ 0 0 45 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.818 113.8 43.8 -66.6 -29.0 -9.5 -0.7 -7.6 56 598 A E H < S+ 0 0 151 -4,-1.4 -1,-0.2 -3,-0.3 -2,-0.2 0.615 112.1 55.5 -87.3 -19.2 -8.4 -4.4 -7.9 57 599 A S X - 0 0 30 -4,-1.4 4,-2.7 -3,-0.2 3,-0.5 -0.834 57.2-172.4-126.9 92.3 -8.6 -5.2 -4.1 58 600 A P H > S+ 0 0 104 0, 0.0 4,-2.6 0, 0.0 5,-0.2 0.862 91.5 53.9 -49.5 -40.5 -12.0 -4.5 -2.4 59 601 A E H > S+ 0 0 133 2,-0.2 4,-2.2 1,-0.2 5,-0.1 0.904 110.2 47.0 -60.6 -41.1 -10.4 -5.3 1.0 60 602 A S H > S+ 0 0 33 -3,-0.5 4,-2.3 2,-0.2 5,-0.2 0.924 113.2 48.0 -67.9 -43.4 -7.6 -2.7 0.3 61 603 A L H X S+ 0 0 7 -4,-2.7 4,-2.5 -7,-0.5 5,-0.2 0.927 110.8 51.2 -63.1 -43.1 -10.1 -0.1 -0.8 62 604 A R H X S+ 0 0 138 -4,-2.6 4,-2.7 -5,-0.2 -2,-0.2 0.928 109.5 49.8 -64.8 -41.9 -12.3 -0.7 2.2 63 605 A S H X S+ 0 0 54 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.936 113.5 46.8 -60.7 -43.9 -9.4 -0.3 4.7 64 606 A K H X S+ 0 0 43 -4,-2.3 4,-2.4 2,-0.2 -1,-0.2 0.862 112.0 49.4 -66.9 -38.1 -8.4 3.0 3.0 65 607 A V H X S+ 0 0 0 -4,-2.5 4,-2.8 2,-0.2 5,-0.2 0.917 109.3 52.5 -67.7 -40.9 -11.9 4.3 3.0 66 608 A D H X S+ 0 0 85 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.911 111.0 48.4 -56.5 -45.0 -12.3 3.4 6.7 67 609 A E H X S+ 0 0 88 -4,-2.2 4,-2.5 -5,-0.2 -2,-0.2 0.922 111.9 48.7 -60.9 -46.2 -9.0 5.4 7.3 68 610 A A H X S+ 0 0 0 -4,-2.4 4,-2.9 2,-0.2 5,-0.2 0.906 111.3 48.6 -63.6 -43.7 -10.3 8.4 5.3 69 611 A V H X S+ 0 0 11 -4,-2.8 4,-3.0 2,-0.2 5,-0.2 0.921 111.9 49.8 -63.2 -42.2 -13.7 8.5 7.1 70 612 A A H X S+ 0 0 58 -4,-2.1 4,-2.1 -5,-0.2 -2,-0.2 0.914 113.9 45.4 -64.4 -42.4 -12.0 8.3 10.5 71 613 A V H X S+ 0 0 52 -4,-2.5 4,-2.7 2,-0.2 5,-0.2 0.943 114.3 48.0 -63.9 -48.6 -9.6 11.1 9.6 72 614 A L H X S+ 0 0 5 -4,-2.9 4,-2.6 1,-0.2 -2,-0.2 0.945 113.9 47.5 -59.0 -46.0 -12.3 13.3 8.1 73 615 A Q H X S+ 0 0 102 -4,-3.0 4,-1.9 2,-0.2 -1,-0.2 0.875 110.9 50.2 -67.2 -37.0 -14.5 12.7 11.1 74 616 A A H X S+ 0 0 66 -4,-2.1 4,-1.9 -5,-0.2 -1,-0.2 0.914 112.5 48.0 -64.0 -43.9 -11.7 13.5 13.6 75 617 A H H X S+ 0 0 46 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.927 109.9 52.8 -58.4 -47.0 -11.0 16.7 11.7 76 618 A Q H X S+ 0 0 87 -4,-2.6 4,-2.7 1,-0.2 -1,-0.2 0.841 105.8 54.5 -60.9 -36.5 -14.7 17.6 11.7 77 619 A A H X S+ 0 0 62 -4,-1.9 4,-1.7 2,-0.2 -1,-0.2 0.921 108.7 48.2 -63.7 -44.4 -14.8 17.1 15.4 78 620 A K H < S+ 0 0 173 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.930 116.1 43.0 -61.6 -45.2 -11.9 19.6 15.8 79 621 A E H < S+ 0 0 129 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.858 112.0 54.3 -68.2 -35.5 -13.6 22.2 13.5 80 622 A A H < 0 0 92 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.825 360.0 360.0 -67.0 -32.6 -17.1 21.6 15.1 81 623 A A < 0 0 122 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.482 360.0 360.0 -72.0 360.0 -15.7 22.3 18.6 82 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 83 913 B T 0 0 187 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 171.3 -1.1 10.2 4.6 84 914 B L - 0 0 20 1,-0.0 -41,-0.1 2,-0.0 -42,-0.1 -0.499 360.0-156.5 -82.0 127.8 -4.6 11.4 4.1 85 915 B N > - 0 0 73 -43,-0.3 3,-2.0 -2,-0.3 -40,-0.1 -0.913 8.5-155.9-106.3 115.9 -5.4 15.2 4.3 86 916 B P T 3 S+ 0 0 19 0, 0.0 -1,-0.1 0, 0.0 -44,-0.1 0.550 92.6 66.9 -68.7 -7.1 -9.0 16.0 5.2 87 917 B N T 3 S+ 0 0 105 -45,-0.1 3,-0.1 2,-0.0 -3,-0.0 0.342 75.9 131.9 -90.4 7.2 -8.5 19.4 3.4 88 918 B A < - 0 0 13 -3,-2.0 -46,-0.2 1,-0.1 -47,-0.1 -0.136 69.6 -90.6 -59.3 150.4 -8.2 17.7 0.0 89 919 B K - 0 0 190 -48,-0.2 -1,-0.1 1,-0.1 2,-0.1 -0.399 46.6-113.4 -56.3 131.4 -10.1 18.9 -3.0 90 920 B E - 0 0 122 -49,-0.1 2,-0.4 -2,-0.1 -52,-0.2 -0.407 30.1-119.8 -65.1 145.8 -13.5 17.2 -3.3 91 921 B F - 0 0 10 -54,-2.2 -50,-0.1 -55,-0.1 -51,-0.1 -0.739 18.3-154.5 -88.7 136.3 -13.9 15.0 -6.3 92 922 B N - 0 0 115 -2,-0.4 -70,-0.1 -52,-0.1 -71,-0.0 -0.939 12.2-151.7-112.5 112.3 -16.6 15.7 -8.9 93 923 B P - 0 0 19 0, 0.0 3,-0.1 0, 0.0 -71,-0.1 -0.297 26.6-115.7 -74.8 165.0 -17.8 12.6 -10.9 94 924 B R S S- 0 0 224 1,-0.3 2,-0.3 2,-0.0 -72,-0.0 0.827 100.1 -3.3 -66.6 -35.3 -19.2 12.8 -14.4 95 925 B S - 0 0 46 -73,-0.1 3,-0.3 1,-0.1 -1,-0.3 -0.979 56.9-137.4-152.5 158.5 -22.5 11.6 -12.9 96 926 B F S S+ 0 0 138 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.664 98.7 76.0 -88.6 -22.0 -23.8 10.5 -9.5 97 927 B S 0 0 118 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.613 360.0 360.0 -64.6 -14.8 -25.8 7.5 -11.0 98 928 B Q 0 0 59 -3,-0.3 -1,-0.2 -69,-0.0 -2,-0.2 0.989 360.0 360.0 -51.9 360.0 -22.2 6.2 -11.1