==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 22-JAN-02 1KUQ . COMPND 2 MOLECULE: 16S RIBOSOMAL RNA FRAGMENT; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR A.D.NIKULIN,S.TISHCHENKO,S.REVTOVICH,B.EHRESMANN, . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6373.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 81.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 13.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 63.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A C >> 0 0 125 0, 0.0 4,-2.5 0, 0.0 5,-1.1 0.000 360.0 360.0 360.0 -14.2 15.2 58.5 14.1 2 4 A K T 45 + 0 0 173 1,-0.2 0, 0.0 3,-0.2 0, 0.0 0.521 360.0 45.4 -61.8 1.9 12.7 59.7 11.4 3 5 A E T >5S+ 0 0 172 3,-0.1 4,-1.1 2,-0.0 -1,-0.2 0.779 122.5 29.8-105.5 -58.2 15.7 58.6 9.4 4 6 A E H >5S+ 0 0 71 2,-0.2 4,-1.8 1,-0.1 3,-0.4 0.952 123.1 47.6 -70.3 -53.7 16.6 55.3 11.0 5 7 A K H X5S+ 0 0 100 -4,-2.5 4,-1.4 1,-0.3 3,-0.4 0.964 114.9 47.9 -52.6 -52.4 13.1 54.3 12.2 6 8 A Q H > S- 0 0 116 3,-0.1 3,-2.4 -5,-0.0 2,-0.6 -0.944 98.5 -65.0-172.6 157.7 3.6 47.7 0.4 16 18 A P T 3 S+ 0 0 136 0, 0.0 -6,-0.1 0, 0.0 0, 0.0 -0.341 124.9 18.1 -55.4 102.3 4.3 51.4 -0.4 17 19 A G T 3 S+ 0 0 65 -2,-0.6 2,-0.4 1,-0.3 -7,-0.1 0.473 84.4 141.9 114.6 3.9 3.0 53.2 2.6 18 20 A D < + 0 0 15 -3,-2.4 -1,-0.3 1,-0.1 -3,-0.1 -0.639 4.3 148.7 -81.7 132.3 2.7 50.4 5.2 19 21 A T + 0 0 94 -2,-0.4 -1,-0.1 -6,-0.1 -9,-0.0 0.368 68.8 45.4-139.9 -4.9 3.7 51.4 8.7 20 22 A G S S+ 0 0 40 4,-0.1 5,-0.1 5,-0.0 -2,-0.1 0.560 73.5 123.5-121.3 -9.2 1.6 49.3 10.9 21 23 A S S > S- 0 0 17 1,-0.1 4,-2.5 3,-0.1 5,-0.2 0.039 77.3-104.9 -49.9 161.4 1.8 45.7 9.6 22 24 A T H > S+ 0 0 20 1,-0.2 4,-1.6 2,-0.2 -1,-0.1 0.772 121.4 54.8 -60.8 -25.0 3.0 43.0 11.9 23 25 A E H > S+ 0 0 17 2,-0.2 4,-3.0 3,-0.2 5,-0.2 0.986 109.0 42.1 -71.7 -61.9 6.3 43.1 10.0 24 26 A V H > S+ 0 0 0 -12,-0.4 4,-2.5 1,-0.2 5,-0.2 0.907 114.9 53.7 -51.3 -45.4 7.1 46.7 10.4 25 27 A Q H X S+ 0 0 75 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.900 112.1 43.4 -57.2 -45.0 5.9 46.5 14.0 26 28 A V H X S+ 0 0 3 -4,-1.6 4,-3.2 -3,-0.2 -1,-0.2 0.884 110.4 55.4 -68.5 -40.5 8.3 43.7 14.7 27 29 A A H X S+ 0 0 3 -4,-3.0 4,-2.8 1,-0.2 -2,-0.2 0.907 112.7 43.8 -58.9 -41.9 11.1 45.3 12.8 28 30 A L H X S+ 0 0 33 -4,-2.5 4,-3.2 -5,-0.2 -2,-0.2 0.916 112.7 48.7 -70.6 -46.6 10.7 48.4 15.0 29 31 A L H X S+ 0 0 21 -4,-2.5 4,-3.5 2,-0.2 5,-0.3 0.985 113.9 50.2 -55.2 -54.3 10.4 46.5 18.3 30 32 A T H >X S+ 0 0 22 -4,-3.2 4,-1.7 1,-0.3 3,-0.6 0.950 111.8 45.3 -44.2 -69.6 13.5 44.5 17.2 31 33 A L H 3X S+ 0 0 32 -4,-2.8 4,-2.0 1,-0.3 -1,-0.3 0.842 116.7 47.7 -44.9 -40.8 15.4 47.7 16.4 32 34 A R H 3X S+ 0 0 127 -4,-3.2 4,-0.7 1,-0.2 -1,-0.3 0.877 107.4 53.8 -71.9 -36.7 14.2 49.2 19.7 33 35 A I H > S+ 0 0 58 -4,-0.3 4,-2.2 -5,-0.3 3,-0.8 0.967 103.4 56.7 -68.7 -56.5 22.5 51.0 26.3 40 42 A L H 3< S+ 0 0 23 -4,-3.4 -1,-0.2 1,-0.3 -2,-0.2 0.751 99.6 64.4 -48.3 -27.0 22.1 48.8 29.4 41 43 A K H >< S+ 0 0 132 -4,-1.6 3,-0.6 -5,-0.2 -1,-0.3 0.965 108.2 37.7 -61.4 -53.8 25.7 47.7 28.8 42 44 A V H << S+ 0 0 110 -4,-0.9 2,-0.7 -3,-0.8 -2,-0.2 0.939 129.5 33.6 -61.8 -50.8 27.0 51.3 29.3 43 45 A H T >< + 0 0 100 -4,-2.2 3,-1.1 1,-0.1 -1,-0.3 -0.639 68.3 158.7-108.9 70.8 24.6 52.0 32.2 44 46 A K T < + 0 0 121 -2,-0.7 -1,-0.1 -3,-0.6 -4,-0.1 0.501 67.1 71.9 -72.7 -2.7 24.2 48.6 33.8 45 47 A K T 3 S+ 0 0 189 -3,-0.1 2,-0.9 1,-0.0 -1,-0.2 0.821 72.9 98.0 -78.9 -30.5 23.0 50.3 37.0 46 48 A D < + 0 0 54 -3,-1.1 4,-0.1 1,-0.2 -3,-0.1 -0.415 36.5 155.9 -60.0 96.9 19.7 51.2 35.2 47 49 A H S > S+ 0 0 140 -2,-0.9 4,-0.9 2,-0.1 -1,-0.2 0.666 71.1 61.0 -96.2 -21.3 17.4 48.4 36.4 48 50 A H H >> S+ 0 0 126 1,-0.2 3,-1.4 2,-0.2 4,-0.8 0.976 102.5 46.5 -67.4 -60.4 14.5 50.6 35.7 49 51 A S H 3> S+ 0 0 50 1,-0.3 4,-1.2 2,-0.2 -1,-0.2 0.726 102.8 69.2 -55.9 -22.2 15.1 51.0 32.0 50 52 A H H 3> S+ 0 0 71 1,-0.2 4,-1.9 2,-0.2 3,-0.3 0.912 88.6 63.0 -62.4 -42.1 15.6 47.3 32.0 51 53 A R H XX S+ 0 0 144 -3,-1.4 4,-1.7 -4,-0.9 3,-0.5 0.940 97.1 56.3 -44.6 -59.4 11.9 46.8 32.7 52 54 A G H 3X S+ 0 0 30 -4,-0.8 4,-2.0 1,-0.3 3,-0.3 0.880 104.6 53.1 -41.5 -50.1 11.0 48.4 29.4 53 55 A L H 3X S+ 0 0 24 -4,-1.2 4,-2.3 -3,-0.3 5,-0.3 0.925 102.1 58.2 -54.3 -48.0 13.1 45.8 27.6 54 56 A L H X S+ 0 0 135 -4,-1.7 4,-3.9 -3,-0.3 3,-0.5 0.971 109.6 48.9 -63.3 -61.8 8.0 44.3 27.9 56 58 A M H 3X S+ 0 0 17 -4,-2.0 4,-2.2 1,-0.3 -1,-0.2 0.815 110.1 55.2 -49.9 -34.8 9.1 44.9 24.2 57 59 A V H 3X S+ 0 0 36 -4,-2.3 4,-1.7 -5,-0.3 -1,-0.3 0.927 114.6 38.8 -66.5 -42.1 10.6 41.4 24.2 58 60 A G H X S+ 0 0 1 -4,-2.5 4,-3.7 3,-0.2 3,-2.1 0.919 111.3 54.1 -66.4 -47.5 1.6 35.9 13.0 68 70 A Q H 3< S+ 0 0 95 -4,-3.5 -2,-0.2 1,-0.3 -1,-0.2 0.949 115.0 40.4 -51.3 -55.1 3.0 32.4 13.3 69 71 A R T 3< S+ 0 0 159 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 -0.021 123.2 44.1 -85.3 30.0 -0.5 31.1 14.0 70 72 A E T <4 S- 0 0 97 -3,-2.1 -2,-0.2 -5,-0.0 -3,-0.2 0.544 132.0 -3.3-137.6 -42.6 -1.9 33.4 11.3 71 73 A D X - 0 0 54 -4,-3.7 4,-2.4 -5,-0.1 3,-0.5 -0.480 57.2-177.3-160.0 77.9 0.3 33.3 8.2 72 74 A P H > S+ 0 0 74 0, 0.0 4,-3.5 0, 0.0 5,-0.4 0.835 84.5 61.6 -45.9 -44.0 3.5 31.1 8.6 73 75 A E H > S+ 0 0 112 1,-0.3 4,-1.7 2,-0.2 5,-0.2 0.966 111.0 38.4 -48.7 -58.0 4.6 32.0 5.2 74 76 A R H > S+ 0 0 64 -3,-0.5 4,-1.7 2,-0.2 -1,-0.3 0.873 119.7 52.7 -60.6 -36.5 4.8 35.6 6.3 75 77 A Y H >X S+ 0 0 33 -4,-2.4 4,-2.0 -8,-0.3 3,-0.6 0.995 105.1 48.1 -62.9 -68.5 6.1 34.4 9.6 76 78 A R H 3X S+ 0 0 150 -4,-3.5 4,-1.9 1,-0.3 -1,-0.2 0.828 112.6 51.6 -42.2 -43.8 9.0 32.1 8.6 77 79 A A H 3< S+ 0 0 46 -4,-1.7 4,-0.4 -5,-0.4 -1,-0.3 0.931 109.1 49.0 -61.8 -47.8 10.3 34.9 6.3 78 80 A L H << S+ 0 0 6 -4,-1.7 5,-0.3 -3,-0.6 -1,-0.2 0.814 113.2 47.3 -63.2 -32.3 10.2 37.5 9.0 79 81 A I H >X S+ 0 0 20 -4,-2.0 4,-1.2 1,-0.2 3,-0.6 0.796 115.8 42.5 -80.1 -31.7 12.1 35.3 11.5 80 82 A E T 3< S+ 0 0 149 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.2 0.355 106.4 65.7 -92.8 2.1 14.8 34.2 9.1 81 83 A K T 34 S- 0 0 106 -4,-0.4 -1,-0.2 -5,-0.2 -2,-0.2 0.119 130.0 -1.1-104.1 14.8 14.9 37.9 8.0 82 84 A L T <4 S- 0 0 84 -3,-0.6 2,-0.3 -5,-0.1 -2,-0.2 0.149 102.6-105.2-162.8 -63.9 16.1 38.7 11.4 83 85 A G < 0 0 43 -4,-1.2 -2,-0.2 -5,-0.3 -3,-0.0 -0.882 360.0 360.0 144.6-175.9 16.5 35.8 13.9 84 86 A I 0 0 155 -2,-0.3 -4,-0.1 -4,-0.1 -5,-0.0 0.127 360.0 360.0-176.6 360.0 14.7 34.3 17.0