==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 27-NOV-09 3KUI . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.KOZLOV,K.GEHRING . 94 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5867.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 69.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 56.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 545 A L 0 0 66 0, 0.0 2,-0.3 0, 0.0 17,-0.0 0.000 360.0 360.0 360.0 128.0 9.0 1.9 30.0 2 546 A T > - 0 0 71 1,-0.1 4,-1.3 0, 0.0 3,-0.2 -0.830 360.0-116.8-117.9 158.5 5.4 1.0 31.0 3 547 A A H > S+ 0 0 65 -2,-0.3 4,-1.7 1,-0.2 5,-0.2 0.761 115.9 60.3 -63.3 -23.9 2.1 2.6 30.1 4 548 A S H > S+ 0 0 87 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.931 100.0 52.2 -68.6 -47.5 1.8 3.4 33.8 5 549 A M H > S+ 0 0 83 1,-0.2 4,-0.6 -3,-0.2 -1,-0.2 0.837 109.5 53.8 -57.5 -33.0 4.9 5.5 33.8 6 550 A L H >< S+ 0 0 7 -4,-1.3 3,-0.8 1,-0.2 -1,-0.2 0.890 105.4 48.0 -71.3 -42.2 3.4 7.4 30.9 7 551 A A H 3< S+ 0 0 82 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.822 102.9 67.3 -67.8 -28.2 0.0 8.3 32.4 8 552 A S H 3< S+ 0 0 105 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.785 100.0 56.2 -61.4 -30.0 2.0 9.5 35.4 9 553 A A S << S- 0 0 21 -3,-0.8 5,-0.0 -4,-0.6 3,-0.0 -0.517 90.5-104.7-101.1 169.1 3.5 12.4 33.4 10 554 A P > - 0 0 59 0, 0.0 4,-1.4 0, 0.0 3,-0.4 -0.546 41.1 -93.1 -90.6 162.2 1.9 15.2 31.3 11 555 A P H >> S+ 0 0 95 0, 0.0 3,-2.0 0, 0.0 4,-1.3 0.860 119.4 46.5 -35.3 -76.4 1.6 15.3 27.5 12 556 A Q H 3> S+ 0 0 143 1,-0.3 4,-1.1 2,-0.2 3,-0.5 0.860 117.4 46.0 -39.9 -47.4 4.7 17.3 26.5 13 557 A E H 3> S+ 0 0 114 -3,-0.4 4,-1.9 1,-0.2 -1,-0.3 0.670 100.9 67.0 -74.3 -19.1 6.9 15.2 28.9 14 558 A Q H X S+ 0 0 0 -4,-2.0 4,-1.9 1,-0.2 3,-0.5 0.847 108.0 58.6 -71.0 -39.2 9.1 8.0 24.7 19 563 A G H 3X S+ 0 0 0 -4,-3.5 4,-3.0 1,-0.2 -1,-0.2 0.844 99.5 59.0 -61.1 -34.3 11.8 9.6 22.6 20 564 A E H 3< S+ 0 0 54 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.845 110.5 41.6 -63.3 -33.6 14.5 8.4 25.0 21 565 A R H << S+ 0 0 107 -4,-0.7 4,-0.4 -3,-0.5 -1,-0.2 0.797 119.6 44.9 -83.3 -29.9 13.4 4.8 24.4 22 566 A L H X S+ 0 0 2 -4,-1.9 4,-2.3 2,-0.1 3,-0.4 0.828 98.4 69.7 -83.2 -36.7 13.0 5.3 20.6 23 567 A F H X S+ 0 0 21 -4,-3.0 4,-2.9 1,-0.2 5,-0.2 0.911 94.3 52.0 -51.4 -54.5 16.1 7.3 19.8 24 568 A P H > S+ 0 0 70 0, 0.0 4,-1.4 0, 0.0 -1,-0.2 0.851 114.1 45.6 -53.8 -36.6 18.8 4.6 20.3 25 569 A L H > S+ 0 0 85 -3,-0.4 4,-1.0 -4,-0.4 -2,-0.2 0.920 115.4 43.7 -73.8 -45.9 16.9 2.2 18.0 26 570 A I H X S+ 0 0 0 -4,-2.3 4,-2.2 1,-0.2 -1,-0.2 0.837 111.8 57.5 -67.5 -31.7 16.2 4.8 15.3 27 571 A Q H < S+ 0 0 83 -4,-2.9 -1,-0.2 -5,-0.3 -2,-0.2 0.888 98.1 58.2 -65.8 -42.3 19.8 5.9 15.6 28 572 A A H < S+ 0 0 87 -4,-1.4 -1,-0.2 -5,-0.2 -2,-0.2 0.849 112.4 42.3 -56.5 -35.6 21.2 2.5 14.9 29 573 A M H < S+ 0 0 61 -4,-1.0 -2,-0.2 1,-0.3 -1,-0.2 0.874 134.8 14.1 -78.2 -41.6 19.3 2.6 11.6 30 574 A H X - 0 0 49 -4,-2.2 4,-1.2 1,-0.1 -1,-0.3 -0.782 64.3-177.0-140.3 91.2 20.2 6.3 10.7 31 575 A P T 4 S+ 0 0 94 0, 0.0 4,-0.3 0, 0.0 -1,-0.1 0.852 86.1 36.0 -57.0 -38.2 23.0 7.8 12.9 32 576 A T T 4 S+ 0 0 127 1,-0.2 3,-0.4 2,-0.1 4,-0.3 0.916 121.4 40.5 -86.6 -45.0 22.7 11.2 11.3 33 577 A L T > S+ 0 0 52 1,-0.2 4,-2.4 2,-0.1 3,-0.3 0.519 86.7 105.2 -81.8 -2.3 19.0 11.7 10.6 34 578 A A H X S+ 0 0 1 -4,-1.2 4,-2.6 1,-0.2 5,-0.3 0.853 74.6 51.4 -43.3 -55.8 18.1 10.1 14.0 35 579 A G H > S+ 0 0 18 -3,-0.4 57,-2.8 -4,-0.3 4,-2.2 0.911 114.8 42.4 -50.5 -51.6 17.1 13.3 15.8 36 580 A K H > S+ 0 0 49 -3,-0.3 4,-2.7 55,-0.3 5,-0.2 0.940 113.5 49.7 -61.8 -55.1 14.8 14.4 13.1 37 581 A I H X S+ 0 0 0 -4,-2.4 4,-2.4 1,-0.2 5,-0.2 0.926 111.6 50.2 -53.0 -48.6 13.1 11.0 12.4 38 582 A T H X S+ 0 0 0 -4,-2.6 4,-2.0 -5,-0.3 -1,-0.2 0.956 110.0 50.9 -54.6 -52.0 12.5 10.6 16.1 39 583 A G H < S+ 0 0 5 -4,-2.2 -2,-0.2 -5,-0.3 -1,-0.2 0.904 110.0 50.0 -52.4 -45.3 11.0 14.1 16.2 40 584 A M H >< S+ 0 0 1 -4,-2.7 3,-0.9 49,-0.2 46,-0.4 0.878 111.6 47.8 -62.1 -40.2 8.7 13.2 13.3 41 585 A L H >< S+ 0 0 1 -4,-2.4 3,-1.4 1,-0.2 -1,-0.2 0.785 94.3 74.9 -74.2 -26.5 7.5 10.0 14.9 42 586 A L T 3< S+ 0 0 16 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.1 0.402 82.1 70.7 -68.7 5.2 6.8 11.5 18.3 43 587 A E T < S+ 0 0 111 -3,-0.9 -1,-0.3 -4,-0.1 2,-0.2 0.147 84.8 94.5-106.1 19.4 3.7 13.1 16.9 44 588 A I S < S- 0 0 23 -3,-1.4 5,-0.1 1,-0.1 41,-0.0 -0.604 94.0 -68.6-107.0 164.0 2.0 9.7 16.7 45 589 A D > - 0 0 105 -2,-0.2 4,-2.8 1,-0.2 3,-0.3 -0.268 37.3-141.7 -52.1 131.3 -0.3 7.9 19.1 46 590 A N H > S+ 0 0 36 1,-0.2 4,-3.7 2,-0.2 5,-0.3 0.916 103.8 60.5 -63.5 -38.4 1.7 6.9 22.2 47 591 A S H > S+ 0 0 89 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.870 112.5 37.3 -54.8 -38.8 -0.3 3.6 22.1 48 592 A E H > S+ 0 0 76 -3,-0.3 4,-2.4 2,-0.2 -1,-0.2 0.798 113.8 55.1 -82.8 -31.1 1.1 3.0 18.7 49 593 A L H X S+ 0 0 1 -4,-2.8 4,-1.6 1,-0.2 -2,-0.2 0.873 108.3 50.9 -65.8 -34.7 4.5 4.5 19.6 50 594 A L H < S+ 0 0 47 -4,-3.7 -1,-0.2 1,-0.2 -2,-0.2 0.832 108.5 52.6 -67.4 -35.0 4.4 1.9 22.5 51 595 A H H >X S+ 0 0 97 -4,-0.8 3,-1.4 -5,-0.3 4,-0.8 0.902 107.1 50.0 -68.4 -42.5 3.7 -0.7 19.9 52 596 A M H 3< S+ 0 0 6 -4,-2.4 3,-0.5 1,-0.3 7,-0.5 0.848 102.0 61.9 -66.0 -32.7 6.6 0.2 17.7 53 597 A L T 3< S+ 0 0 37 -4,-1.6 -1,-0.3 1,-0.3 -2,-0.2 0.523 113.4 37.7 -69.3 -5.6 8.9 0.0 20.7 54 598 A E T <4 S+ 0 0 165 -3,-1.4 -1,-0.3 1,-0.2 -2,-0.2 0.441 114.5 58.7-120.5 -9.8 7.9 -3.6 20.9 55 599 A S X - 0 0 30 -4,-0.8 4,-2.6 -3,-0.5 -1,-0.2 -0.896 56.5-175.2-128.9 101.5 7.8 -4.3 17.2 56 600 A P H > S+ 0 0 99 0, 0.0 4,-3.9 0, 0.0 5,-0.3 0.931 88.4 53.8 -59.0 -50.0 11.0 -3.7 15.3 57 601 A E H > S+ 0 0 129 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.896 112.6 46.9 -53.4 -39.1 9.5 -4.5 11.9 58 602 A S H > S+ 0 0 35 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.926 113.8 46.1 -69.0 -45.6 6.8 -1.8 12.8 59 603 A L H X S+ 0 0 9 -4,-2.6 4,-2.8 -7,-0.5 -2,-0.2 0.961 115.6 46.4 -60.3 -51.0 9.4 0.7 13.9 60 604 A R H X S+ 0 0 126 -4,-3.9 4,-3.0 1,-0.2 5,-0.3 0.927 110.6 52.8 -58.2 -46.4 11.6 0.1 10.9 61 605 A S H X S+ 0 0 70 -4,-2.5 4,-1.3 -5,-0.3 -1,-0.2 0.901 112.6 44.7 -56.6 -42.2 8.6 0.3 8.6 62 606 A K H X S+ 0 0 21 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.891 112.1 53.2 -70.5 -38.6 7.7 3.7 10.1 63 607 A V H X S+ 0 0 0 -4,-2.8 4,-2.5 1,-0.2 -2,-0.2 0.947 107.9 48.7 -61.8 -50.3 11.3 4.9 10.0 64 608 A D H X S+ 0 0 81 -4,-3.0 4,-2.2 1,-0.2 -1,-0.2 0.849 110.6 53.3 -58.3 -34.6 11.7 4.1 6.3 65 609 A E H X S+ 0 0 64 -4,-1.3 4,-2.1 -5,-0.3 5,-0.3 0.957 109.8 46.6 -65.3 -50.1 8.5 5.9 5.6 66 610 A A H X S+ 0 0 0 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.876 110.8 54.1 -58.9 -38.9 9.7 9.0 7.5 67 611 A V H X S+ 0 0 18 -4,-2.5 4,-1.9 2,-0.2 -1,-0.2 0.916 108.2 49.0 -63.0 -43.5 13.0 8.8 5.6 68 612 A A H X S+ 0 0 53 -4,-2.2 4,-2.4 2,-0.2 5,-0.2 0.950 114.7 41.9 -60.9 -53.6 11.3 8.8 2.2 69 613 A V H X S+ 0 0 63 -4,-2.1 4,-2.5 1,-0.2 5,-0.2 0.876 111.4 57.1 -62.1 -41.5 9.0 11.8 2.9 70 614 A L H X S+ 0 0 4 -4,-2.3 4,-2.1 -5,-0.3 -1,-0.2 0.912 112.6 40.4 -56.6 -46.3 11.8 13.7 4.5 71 615 A Q H X S+ 0 0 109 -4,-1.9 4,-2.6 2,-0.2 -2,-0.2 0.853 112.8 53.1 -73.0 -38.5 14.0 13.3 1.4 72 616 A A H X S+ 0 0 65 -4,-2.4 4,-1.5 2,-0.2 -2,-0.2 0.880 112.0 47.7 -65.5 -37.9 11.2 14.0 -1.1 73 617 A H H >X S+ 0 0 45 -4,-2.5 4,-2.3 2,-0.2 3,-0.6 0.991 113.4 44.6 -64.9 -60.5 10.3 17.1 0.7 74 618 A Q H 3< S+ 0 0 105 -4,-2.1 4,-0.4 1,-0.3 -2,-0.2 0.884 112.3 52.8 -49.8 -45.7 13.9 18.5 1.0 75 619 A A H >X S+ 0 0 60 -4,-2.6 4,-1.8 1,-0.2 3,-0.7 0.861 108.2 53.1 -60.0 -35.3 14.5 17.5 -2.6 76 620 A K H S+ 0 0 133 -4,-1.5 4,-1.7 -3,-0.6 5,-0.6 0.962 105.9 50.7 -63.5 -52.5 11.4 19.5 -3.5 77 621 A E H 3<5S+ 0 0 65 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.511 111.1 54.7 -63.9 -3.8 12.6 22.6 -1.7 78 622 A A H <45S+ 0 0 75 -3,-0.7 -1,-0.2 -4,-0.4 -2,-0.2 0.834 104.0 47.4 -97.3 -43.7 15.8 22.2 -3.7 79 623 A A H <5S+ 0 0 99 -4,-1.8 -2,-0.2 -3,-0.3 -3,-0.1 0.925 133.8 14.4 -64.9 -46.7 14.5 22.1 -7.3 80 624 A Q T <5 0 0 125 -4,-1.7 -3,-0.2 -5,-0.2 -2,-0.1 0.902 360.0 360.0 -94.9 -54.8 12.3 25.2 -6.8 81 625 A K < 0 0 178 -5,-0.6 -2,-0.1 0, 0.0 -3,-0.1 0.275 360.0 360.0 -73.8 360.0 13.4 26.9 -3.6 82 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 83 67 B R 0 0 113 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 93.0 -0.0 7.2 8.3 84 68 B Q - 0 0 96 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.997 360.0-162.6-131.0 128.3 0.8 10.9 7.8 85 69 B L - 0 0 35 -2,-0.4 2,-0.7 -20,-0.1 -44,-0.1 -0.883 16.1-135.0-118.2 145.6 4.1 12.5 8.9 86 70 B N > - 0 0 70 -46,-0.4 3,-1.3 -2,-0.4 -43,-0.1 -0.846 8.3-166.1 -98.9 113.4 5.2 16.1 9.5 87 71 B V T 3 S+ 0 0 22 -2,-0.7 -1,-0.1 1,-0.3 -47,-0.1 0.563 88.8 59.6 -72.1 -9.6 8.6 16.9 7.9 88 72 B N T 3 S+ 0 0 121 -48,-0.1 -1,-0.3 2,-0.1 2,-0.1 0.182 74.0 132.8-103.7 15.3 8.7 20.1 10.0 89 73 B A < - 0 0 2 -3,-1.3 -49,-0.2 1,-0.1 -50,-0.1 -0.412 68.3-100.9 -66.4 141.3 8.5 18.3 13.3 90 74 B K - 0 0 187 -51,-0.2 -1,-0.1 1,-0.1 -2,-0.1 -0.444 42.2-108.6 -65.6 131.3 11.1 19.5 15.8 91 75 B P - 0 0 69 0, 0.0 -55,-0.3 0, 0.0 2,-0.2 -0.266 31.8-123.4 -59.8 146.1 14.1 17.2 16.1 92 76 B F - 0 0 14 -57,-2.8 -53,-0.2 -58,-0.2 -54,-0.1 -0.596 20.2-152.9 -88.8 154.0 14.3 15.2 19.3 93 77 B V - 0 0 103 -2,-0.2 -73,-0.1 -55,-0.1 -74,-0.1 -0.988 15.8-121.8-133.7 125.5 17.4 15.3 21.5 94 78 B P 0 0 66 0, 0.0 -74,-0.1 0, 0.0 -78,-0.0 0.021 360.0 360.0 -56.4 164.9 18.6 12.5 23.9 95 79 B N 0 0 118 -75,-0.1 -75,-0.0 0, 0.0 -2,-0.0 -0.479 360.0 360.0-152.3 360.0 19.1 12.9 27.7