==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 27-NOV-09 3KUJ . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.KOZLOV,K.GEHRING . 92 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5687.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 69.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 50 54.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 544 A P 0 0 145 0, 0.0 2,-0.3 0, 0.0 21,-0.0 0.000 360.0 360.0 360.0 147.9 0.2 7.7 17.4 2 545 A L - 0 0 10 16,-0.1 2,-0.3 17,-0.1 3,-0.0 -0.629 360.0-162.0 -74.8 132.3 3.7 9.3 17.1 3 546 A T > - 0 0 59 -2,-0.3 4,-2.2 1,-0.1 5,-0.2 -0.757 32.0-114.1-116.4 162.7 3.6 13.0 17.7 4 547 A A H > S+ 0 0 60 -2,-0.3 4,-3.1 1,-0.2 5,-0.2 0.883 118.3 55.1 -59.3 -41.2 5.9 15.9 16.9 5 548 A S H > S+ 0 0 84 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.903 107.3 49.3 -58.5 -44.5 6.4 16.4 20.7 6 549 A M H 4 S+ 0 0 85 1,-0.2 4,-0.4 2,-0.2 -2,-0.2 0.923 114.8 44.7 -62.0 -44.4 7.5 12.8 21.1 7 550 A L H >< S+ 0 0 9 -4,-2.2 3,-1.2 1,-0.2 -2,-0.2 0.928 111.5 51.0 -65.7 -45.3 10.0 13.2 18.2 8 551 A A H 3< S+ 0 0 80 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.754 111.0 49.9 -66.7 -25.1 11.4 16.5 19.3 9 552 A S T 3< S+ 0 0 101 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.468 93.5 93.8 -91.5 -5.7 12.0 15.1 22.8 10 553 A A S < S- 0 0 14 -3,-1.2 5,-0.1 -4,-0.4 -3,-0.0 -0.632 93.8 -95.2 -83.6 146.9 13.8 12.1 21.5 11 554 A P >> - 0 0 72 0, 0.0 3,-2.5 0, 0.0 4,-0.7 -0.380 38.9-117.9 -54.9 136.0 17.6 12.1 21.1 12 555 A P H >> S+ 0 0 102 0, 0.0 3,-1.0 0, 0.0 4,-0.6 0.827 111.8 63.8 -49.3 -34.6 18.3 13.1 17.5 13 556 A Q H 34 S+ 0 0 172 1,-0.2 4,-0.2 2,-0.1 -3,-0.0 0.609 105.9 44.1 -70.1 -12.1 20.0 9.7 16.9 14 557 A E H <> S+ 0 0 81 -3,-2.5 4,-2.5 -7,-0.1 -1,-0.2 0.545 90.1 87.8-101.7 -10.2 16.7 7.8 17.5 15 558 A Q H S+ 0 0 67 -4,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.913 108.8 51.6 -62.9 -43.5 14.4 5.0 13.6 18 561 A M H X S+ 0 0 44 -4,-2.5 4,-0.9 2,-0.2 -2,-0.2 0.920 114.5 42.4 -59.3 -44.4 11.2 6.1 15.4 19 562 A L H >X S+ 0 0 0 -4,-2.2 4,-2.5 1,-0.2 3,-0.7 0.923 112.8 54.2 -66.7 -44.5 9.7 7.4 12.2 20 563 A G H 3X S+ 0 0 0 -4,-3.0 4,-2.8 1,-0.2 -2,-0.2 0.862 102.4 57.1 -57.3 -40.4 10.9 4.3 10.2 21 564 A E H 3< S+ 0 0 78 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.817 113.6 39.5 -63.4 -31.1 9.2 1.9 12.6 22 565 A R H X S+ 0 0 0 -4,-2.5 4,-2.4 1,-0.1 3,-0.5 0.860 98.8 71.7 -73.8 -36.4 6.3 4.1 8.2 24 567 A F H 3X S+ 0 0 22 -4,-2.8 4,-3.3 1,-0.2 5,-0.2 0.875 94.8 49.1 -54.2 -49.6 7.7 0.7 7.4 25 568 A P H 3> S+ 0 0 67 0, 0.0 4,-1.5 0, 0.0 -1,-0.2 0.871 113.3 48.8 -61.9 -33.1 4.5 -1.4 7.9 26 569 A L H 4 S+ 0 0 129 2,-0.1 3,-0.5 1,-0.1 4,-0.3 0.862 122.3 44.3 -94.9 -37.4 9.8 -6.8 -1.2 34 577 A L T 3> S+ 0 0 28 1,-0.2 4,-3.0 2,-0.1 5,-0.3 0.524 84.2 102.9 -81.2 -2.1 11.0 -3.2 -1.8 35 578 A A H 3X S+ 0 0 1 -4,-1.5 4,-2.9 1,-0.2 5,-0.2 0.833 78.0 49.0 -52.8 -45.4 9.7 -1.9 1.6 36 579 A G H <> S+ 0 0 5 -3,-0.5 52,-3.0 2,-0.2 4,-2.2 0.937 116.5 42.2 -62.5 -45.4 13.1 -1.8 3.3 37 580 A K H > S+ 0 0 49 -4,-0.3 4,-2.2 -3,-0.3 -2,-0.2 0.926 116.3 47.6 -67.3 -45.1 14.8 0.0 0.5 38 581 A I H X S+ 0 0 0 -4,-3.0 4,-2.8 2,-0.2 5,-0.2 0.914 111.1 51.4 -65.0 -41.8 11.9 2.4 -0.1 39 582 A T H X S+ 0 0 0 -4,-2.9 4,-2.1 -5,-0.3 -1,-0.2 0.937 109.6 50.7 -59.5 -45.7 11.7 3.2 3.6 40 583 A G H < S+ 0 0 7 -4,-2.2 4,-0.3 -5,-0.2 46,-0.2 0.893 110.8 48.9 -56.2 -42.7 15.4 3.9 3.7 41 584 A M H >< S+ 0 0 0 -4,-2.2 3,-1.3 44,-0.2 -2,-0.2 0.928 111.8 48.5 -65.3 -44.0 15.0 6.3 0.7 42 585 A L H >< S+ 0 0 1 -4,-2.8 3,-2.3 1,-0.2 -1,-0.2 0.837 97.7 69.8 -66.1 -29.5 12.1 8.1 2.3 43 586 A L T 3< S+ 0 0 21 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.617 84.8 70.2 -68.5 -8.4 13.9 8.5 5.6 44 587 A E T < S+ 0 0 106 -3,-1.3 -1,-0.3 -4,-0.3 -2,-0.2 0.620 79.8 96.6 -79.5 -12.2 16.3 11.0 4.0 45 588 A I S < S- 0 0 17 -3,-2.3 5,-0.0 -4,-0.2 -3,-0.0 -0.404 93.9 -88.0 -68.7 153.1 13.3 13.4 3.9 46 589 A D > - 0 0 96 1,-0.1 4,-2.2 -2,-0.1 5,-0.2 -0.209 35.6-113.5 -66.6 158.6 13.2 15.9 6.7 47 590 A N H > S+ 0 0 40 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.831 111.8 56.0 -67.6 -33.5 11.4 14.9 9.9 48 591 A S H > S+ 0 0 87 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.934 111.7 43.9 -62.7 -46.1 8.6 17.4 9.7 49 592 A E H > S+ 0 0 56 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.881 111.2 54.6 -66.9 -37.9 7.6 16.1 6.3 50 593 A L H X S+ 0 0 0 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.911 108.2 49.0 -61.5 -42.2 8.0 12.5 7.4 51 594 A L H X S+ 0 0 23 -4,-2.4 4,-1.5 2,-0.2 -2,-0.2 0.926 110.7 51.0 -63.1 -42.3 5.6 13.1 10.3 52 595 A H H X S+ 0 0 93 -4,-2.2 4,-1.4 1,-0.2 3,-0.2 0.908 108.4 52.4 -58.3 -42.4 3.2 14.7 7.8 53 596 A M H < S+ 0 0 1 -4,-2.6 7,-0.5 1,-0.2 -1,-0.2 0.866 105.5 54.6 -61.7 -37.1 3.5 11.6 5.6 54 597 A L H < S+ 0 0 38 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.854 114.9 40.2 -61.9 -35.2 2.7 9.4 8.5 55 598 A E H < S+ 0 0 131 -4,-1.5 -2,-0.2 -3,-0.2 -1,-0.2 0.600 113.6 56.7 -89.3 -14.4 -0.5 11.4 9.1 56 599 A S >X - 0 0 15 -4,-1.4 4,-2.3 -5,-0.1 3,-0.5 -0.884 60.8-168.4-126.8 95.3 -1.5 11.8 5.4 57 600 A P H 3> S+ 0 0 99 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.860 90.6 52.9 -53.4 -39.6 -1.9 8.6 3.3 58 601 A E H 3> S+ 0 0 142 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.882 109.9 49.7 -63.7 -37.2 -2.0 10.5 0.0 59 602 A S H <> S+ 0 0 28 -3,-0.5 4,-1.8 2,-0.2 -1,-0.2 0.924 111.4 47.5 -67.3 -44.9 1.2 12.2 0.9 60 603 A L H X S+ 0 0 8 -4,-2.3 4,-2.7 -7,-0.5 5,-0.2 0.934 111.7 51.2 -60.5 -46.0 3.0 9.0 1.8 61 604 A R H X S+ 0 0 162 -4,-2.7 4,-3.0 1,-0.2 5,-0.2 0.891 106.6 53.5 -62.2 -39.7 1.8 7.3 -1.4 62 605 A S H X S+ 0 0 75 -4,-2.1 4,-1.8 2,-0.2 -1,-0.2 0.914 112.7 43.9 -61.1 -41.4 3.0 10.1 -3.6 63 606 A K H X S+ 0 0 44 -4,-1.8 4,-2.5 2,-0.2 -2,-0.2 0.910 114.3 49.5 -71.2 -41.9 6.5 9.8 -2.1 64 607 A V H X S+ 0 0 0 -4,-2.7 4,-2.9 2,-0.2 5,-0.2 0.925 109.8 51.6 -59.1 -46.5 6.5 6.0 -2.2 65 608 A D H X S+ 0 0 80 -4,-3.0 4,-2.4 1,-0.2 -2,-0.2 0.896 111.3 47.5 -61.4 -40.0 5.4 6.1 -5.9 66 609 A E H X S+ 0 0 93 -4,-1.8 4,-2.2 -5,-0.2 5,-0.2 0.929 112.9 47.9 -65.9 -45.0 8.2 8.5 -6.8 67 610 A A H X S+ 0 0 0 -4,-2.5 4,-2.9 1,-0.2 -2,-0.2 0.916 113.9 47.7 -61.4 -42.9 10.8 6.4 -4.9 68 611 A V H X S+ 0 0 9 -4,-2.9 4,-2.9 2,-0.2 5,-0.3 0.908 109.8 51.7 -65.2 -43.8 9.6 3.2 -6.6 69 612 A A H X S+ 0 0 56 -4,-2.4 4,-1.7 -5,-0.2 -1,-0.2 0.927 116.0 41.6 -58.1 -44.6 9.6 4.8 -10.1 70 613 A V H X S+ 0 0 47 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.932 116.2 48.1 -69.3 -46.7 13.2 5.9 -9.6 71 614 A L H X S+ 0 0 7 -4,-2.9 4,-2.8 -5,-0.2 -2,-0.2 0.916 112.6 48.1 -60.4 -45.2 14.4 2.7 -7.9 72 615 A Q H X S+ 0 0 103 -4,-2.9 4,-2.2 2,-0.2 -1,-0.2 0.868 111.2 50.3 -68.4 -35.8 12.8 0.4 -10.5 73 616 A A H X S+ 0 0 58 -4,-1.7 4,-2.1 -5,-0.3 -1,-0.2 0.895 111.6 49.8 -63.6 -41.1 14.2 2.5 -13.4 74 617 A H H < S+ 0 0 80 -4,-2.3 -2,-0.2 2,-0.2 -1,-0.2 0.928 110.9 48.6 -62.6 -46.3 17.6 2.2 -11.6 75 618 A Q H < S+ 0 0 116 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.888 111.3 51.1 -60.5 -42.4 17.3 -1.6 -11.3 76 619 A A H < 0 0 88 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.902 360.0 360.0 -63.9 -44.9 16.3 -1.9 -14.9 77 620 A K < 0 0 192 -4,-2.1 -2,-0.2 -5,-0.1 -3,-0.2 0.944 360.0 360.0 -84.6 360.0 19.2 0.1 -16.3 78 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 79 76 B F 0 0 90 0, 0.0 -34,-0.0 0, 0.0 -37,-0.0 0.000 360.0 360.0 360.0 112.2 12.0 15.1 -3.1 80 77 B V - 0 0 134 -10,-0.0 -13,-0.0 2,-0.0 2,-0.0 -0.917 360.0-127.1 -98.6 111.0 14.7 13.6 -5.3 81 78 B P - 0 0 13 0, 0.0 2,-0.7 0, 0.0 -39,-0.1 -0.324 13.5-142.5 -61.0 139.1 15.0 9.9 -4.3 82 79 B N > - 0 0 56 -41,-0.2 3,-2.1 1,-0.1 -38,-0.1 -0.892 8.5-164.8-106.9 105.8 18.5 8.6 -3.5 83 80 B V T 3 S+ 0 0 29 -2,-0.7 -1,-0.1 1,-0.3 -42,-0.1 0.632 88.7 62.6 -66.7 -12.5 19.0 5.1 -4.8 84 81 B H T 3 S+ 0 0 160 2,-0.1 -1,-0.3 -43,-0.1 3,-0.1 0.403 75.0 129.0 -86.5 -2.3 22.1 4.9 -2.5 85 82 B A < - 0 0 0 -3,-2.1 -44,-0.2 1,-0.1 -45,-0.1 -0.279 69.6-103.0 -59.7 140.6 20.0 5.3 0.7 86 83 B A - 0 0 81 -46,-0.2 -1,-0.1 1,-0.1 2,-0.1 -0.413 39.1-110.1 -61.1 133.8 20.6 2.6 3.3 87 84 B E - 0 0 119 -47,-0.1 2,-0.7 -2,-0.1 -50,-0.3 -0.414 27.4-121.6 -60.1 137.4 17.9 -0.0 3.4 88 85 B F - 0 0 16 -52,-3.0 -49,-0.1 -53,-0.2 -48,-0.1 -0.799 27.5-154.2 -81.8 117.1 15.8 0.2 6.5 89 86 B V - 0 0 94 -2,-0.7 2,-0.4 -50,-0.1 3,-0.1 -0.858 14.0-129.6 -92.8 118.4 16.1 -3.2 8.2 90 87 B P + 0 0 77 0, 0.0 -54,-0.0 0, 0.0 -69,-0.0 -0.592 52.8 140.7 -64.8 123.9 13.2 -4.1 10.4 91 88 B S + 0 0 80 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 0.214 25.6 124.3-146.9 4.2 14.7 -5.1 13.7 92 89 B F 0 0 57 -3,-0.1 0, 0.0 -71,-0.0 0, 0.0 -0.570 360.0 360.0 -70.5 131.0 12.2 -3.6 16.1 93 90 B L 0 0 221 -2,-0.3 -2,-0.0 -3,-0.0 -1,-0.0 -0.966 360.0 360.0-127.4 360.0 10.9 -6.2 18.5