==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-JAN-02 1KVN . COMPND 2 MOLECULE: SRP19; . SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; . AUTHOR O.N.PAKHOMOVA,S.DEEP,Q.HUANG,C.ZWIEB,A.P.HINCK . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8900.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 53.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 30.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 195 0, 0.0 2,-0.3 0, 0.0 68,-0.0 0.000 360.0 360.0 360.0 60.8 -13.5 3.9 15.7 2 2 A K - 0 0 100 2,-0.0 2,-0.4 70,-0.0 69,-0.2 -0.998 360.0-159.2-148.6 147.4 -12.9 5.4 12.2 3 3 A E + 0 0 152 -2,-0.3 2,-0.4 66,-0.3 66,-0.2 -0.986 12.1 170.6-134.4 136.5 -13.1 4.0 8.7 4 4 A S E -A 68 0A 13 64,-1.8 64,-3.3 -2,-0.4 2,-0.4 -1.000 29.8-124.6-141.4 138.9 -11.6 5.2 5.4 5 5 A V E +A 67 0A 92 -2,-0.4 2,-0.3 62,-0.2 62,-0.2 -0.688 29.3 180.0 -88.7 135.8 -11.4 3.5 2.0 6 6 A V E -A 66 0A 1 60,-3.3 60,-2.4 -2,-0.4 2,-0.3 -0.954 10.8-149.7-130.3 148.3 -8.0 3.0 0.4 7 7 A W E > -A 65 0A 120 -2,-0.3 4,-1.1 58,-0.2 58,-0.2 -0.811 22.8-127.9-118.3 164.3 -7.1 1.4 -2.9 8 8 A T T 4 S+ 0 0 14 56,-1.1 24,-0.2 -2,-0.3 57,-0.1 0.922 116.3 37.7 -72.2 -42.7 -4.1 -0.5 -4.4 9 9 A V T >4 S+ 0 0 20 55,-0.4 3,-2.3 1,-0.2 6,-0.2 0.811 103.6 72.9 -78.4 -29.2 -4.0 1.8 -7.4 10 10 A N T 34 S+ 0 0 0 1,-0.3 12,-0.8 11,-0.2 13,-0.4 0.931 105.0 37.7 -52.2 -46.4 -4.8 4.9 -5.3 11 11 A L T 3< S+ 0 0 0 -4,-1.1 18,-0.8 10,-0.1 2,-0.5 -0.044 102.0 99.7 -96.2 35.6 -1.4 4.8 -3.7 12 12 A D < - 0 0 3 -3,-2.3 3,-0.2 8,-0.2 11,-0.2 -0.965 50.1-170.3-124.6 124.6 0.3 3.8 -7.0 13 13 A S S S+ 0 0 18 -2,-0.5 -1,-0.1 1,-0.2 8,-0.1 0.780 84.9 69.9 -81.0 -25.3 2.0 6.3 -9.3 14 14 A K S S+ 0 0 144 15,-0.1 2,-0.2 2,-0.0 -1,-0.2 0.835 91.1 71.3 -61.0 -31.1 2.3 3.6 -12.1 15 15 A K S S- 0 0 64 -3,-0.2 2,-0.1 -6,-0.2 -3,-0.0 -0.598 86.0-123.9 -87.5 149.4 -1.5 3.8 -12.6 16 16 A S >> - 0 0 63 -2,-0.2 5,-1.4 1,-0.1 4,-1.2 -0.352 31.8 -98.1 -84.5 170.8 -3.1 6.9 -14.2 17 17 A R T >45S+ 0 0 200 1,-0.2 3,-0.7 2,-0.2 4,-0.4 0.937 128.9 44.7 -56.2 -43.9 -5.8 9.0 -12.6 18 18 A A T 345S+ 0 0 97 1,-0.2 -1,-0.2 2,-0.2 -3,-0.0 0.903 103.3 64.9 -67.3 -37.5 -8.5 7.1 -14.6 19 19 A E T 345S- 0 0 113 1,-0.1 -1,-0.2 -10,-0.1 -2,-0.2 0.810 135.9 -82.4 -55.8 -25.9 -6.7 3.8 -13.9 20 20 A G T <<5S+ 0 0 29 -4,-1.2 2,-0.4 -3,-0.7 -3,-0.2 0.567 86.8 133.5 129.7 26.5 -7.7 4.5 -10.2 21 21 A R < + 0 0 55 -5,-1.4 -1,-0.3 -4,-0.4 -11,-0.2 -0.831 11.2 153.1-106.8 144.0 -5.0 6.9 -8.9 22 22 A R + 0 0 127 -12,-0.8 -12,-0.1 -2,-0.4 -1,-0.1 0.060 41.2 105.2-155.3 29.1 -5.8 10.0 -6.8 23 23 A I S S- 0 0 4 -13,-0.4 2,-0.2 -11,-0.2 5,-0.1 -0.902 77.1 -98.1-118.4 148.7 -2.8 10.6 -4.6 24 24 A P > - 0 0 45 0, 0.0 3,-1.8 0, 0.0 -11,-0.1 -0.410 27.0-135.5 -63.9 126.8 -0.0 13.2 -5.0 25 25 A R G > S+ 0 0 180 1,-0.3 3,-1.5 -2,-0.2 -12,-0.1 0.785 98.7 76.2 -55.1 -26.8 3.0 11.7 -6.7 26 26 A R G 3 S+ 0 0 224 1,-0.3 -1,-0.3 3,-0.0 -3,-0.0 0.875 114.3 19.5 -56.9 -33.7 5.2 13.4 -4.1 27 27 A F G < S+ 0 0 106 -3,-1.8 2,-0.4 2,-0.0 -1,-0.3 -0.083 100.6 116.3-126.2 35.9 4.2 10.7 -1.6 28 28 A A < - 0 0 16 -3,-1.5 -16,-0.1 -5,-0.1 -17,-0.1 -0.878 53.5-144.4-108.6 136.5 2.9 7.9 -3.9 29 29 A V - 0 0 6 -18,-0.8 -15,-0.1 -2,-0.4 3,-0.1 -0.860 18.0-134.4-101.1 119.9 4.5 4.5 -4.1 30 30 A P S S+ 0 0 64 0, 0.0 3,-0.2 0, 0.0 -18,-0.1 -0.320 84.7 27.4 -67.7 150.8 4.6 2.9 -7.6 31 31 A N S S- 0 0 98 1,-0.1 2,-0.3 -22,-0.1 -22,-0.1 0.998 89.8-131.0 61.6 69.1 3.5 -0.8 -7.8 32 32 A V - 0 0 26 -24,-0.2 2,-0.4 4,-0.1 -1,-0.1 -0.334 30.4-164.3 -55.6 112.9 1.3 -0.9 -4.8 33 33 A K >> - 0 0 33 -2,-0.3 4,-2.1 -3,-0.2 3,-0.6 -0.820 28.2-131.3-104.9 143.3 2.5 -4.1 -3.0 34 34 A L H 3>>S+ 0 0 90 -2,-0.4 4,-3.6 1,-0.2 5,-0.7 0.897 107.4 64.5 -56.8 -36.9 0.7 -5.9 -0.2 35 35 A H H 3>5S+ 0 0 131 1,-0.2 4,-1.3 2,-0.2 5,-0.3 0.918 106.7 40.2 -55.8 -43.4 3.9 -5.9 1.8 36 36 A E H <>5S+ 0 0 0 -3,-0.6 4,-1.1 3,-0.2 -1,-0.2 0.931 121.5 42.7 -73.5 -42.5 3.9 -2.0 2.0 37 37 A L H X5S+ 0 0 3 -4,-2.1 4,-1.0 2,-0.2 -2,-0.2 0.968 125.3 32.3 -68.5 -51.9 0.1 -1.8 2.6 38 38 A V H X5S+ 0 0 34 -4,-3.6 4,-2.2 -5,-0.2 3,-0.4 0.950 115.3 55.8 -72.8 -49.1 -0.2 -4.8 5.1 39 39 A E H XX>S+ 0 0 11 -4,-1.0 4,-2.6 -3,-0.4 3,-1.0 0.884 103.8 64.8 -66.7 -35.5 -0.7 -1.8 9.6 42 42 A K H 3<5S+ 0 0 145 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.880 92.4 64.1 -56.2 -34.2 1.2 -4.7 11.3 43 43 A E H 3<5S+ 0 0 127 -4,-1.2 -1,-0.3 -3,-0.5 -2,-0.2 0.908 119.3 23.6 -57.7 -39.0 3.4 -2.0 13.0 44 44 A L H <<5S- 0 0 115 -3,-1.0 -2,-0.2 -4,-0.7 -1,-0.2 0.553 97.0-137.0-103.5 -9.3 0.3 -0.8 14.8 45 45 A G T <5S+ 0 0 60 -4,-2.6 -3,-0.2 -5,-0.2 2,-0.2 0.572 87.1 45.6 66.4 3.9 -1.7 -4.1 14.6 46 46 A L S - 0 0 124 -2,-0.3 4,-1.2 1,-0.1 -1,-0.1 -0.298 22.2-125.2 -64.9 150.3 -12.8 -10.1 -3.8 54 54 A K T 4 S+ 0 0 174 1,-0.2 -1,-0.1 2,-0.2 4,-0.1 0.809 99.9 78.4 -67.0 -28.2 -13.6 -13.8 -4.1 55 55 A Y T 4 S+ 0 0 207 1,-0.2 -1,-0.2 2,-0.1 -3,-0.0 0.944 104.9 30.6 -45.4 -61.6 -14.1 -13.5 -7.9 56 56 A P T 4 S+ 0 0 42 0, 0.0 -1,-0.2 0, 0.0 -2,-0.2 0.819 94.7 165.0 -68.6 -30.5 -10.3 -13.5 -8.6 57 57 A K < + 0 0 147 -4,-1.2 -4,-0.1 3,-0.0 -2,-0.1 0.190 39.8 54.9 38.5-167.3 -9.7 -15.7 -5.6 58 58 A S S S- 0 0 95 1,-0.1 2,-0.6 -4,-0.1 -1,-0.0 0.106 113.1 -51.8 42.5-163.9 -6.2 -17.4 -5.3 59 59 A W S S+ 0 0 179 2,-0.0 2,-0.3 3,-0.0 -1,-0.1 -0.892 75.3 149.1-107.3 116.2 -3.2 -15.1 -5.6 60 60 A W - 0 0 177 -2,-0.6 3,-0.4 3,-0.1 -3,-0.0 -0.975 51.0-131.1-143.2 158.2 -3.2 -12.7 -8.6 61 61 A E S S+ 0 0 133 -2,-0.3 3,-0.1 1,-0.2 -2,-0.0 0.079 70.9 117.5 -95.6 25.2 -1.9 -9.2 -9.4 62 62 A E S S- 0 0 145 1,-0.2 -1,-0.2 -6,-0.0 2,-0.1 0.647 88.8 -87.0 -68.0 -9.4 -5.3 -8.2 -10.9 63 63 A G - 0 0 51 -3,-0.4 -1,-0.2 -31,-0.0 2,-0.2 -0.218 43.5-147.3 117.6 149.6 -5.5 -5.5 -8.2 64 64 A G - 0 0 11 -3,-0.1 -56,-1.1 -2,-0.1 -55,-0.4 -0.662 8.3-131.2-134.4-167.4 -6.7 -5.4 -4.6 65 65 A R E -A 7 0A 92 -14,-0.3 -14,-1.9 -58,-0.2 2,-0.3 -0.994 12.9-160.9-152.1 144.2 -8.3 -2.9 -2.2 66 66 A V E -AB 6 50A 3 -60,-2.4 -60,-3.3 -2,-0.3 2,-0.4 -0.945 6.8-152.0-130.3 152.1 -7.6 -1.7 1.4 67 67 A V E -AB 5 49A 59 -18,-3.3 -18,-1.1 -2,-0.3 2,-0.4 -0.968 17.0-170.4-121.6 129.1 -9.6 0.0 4.2 68 68 A V E -AB 4 48A 1 -64,-3.3 -64,-1.8 -2,-0.4 3,-0.4 -0.924 25.6-110.3-123.4 148.4 -7.9 2.2 6.8 69 69 A E S S+ 0 0 57 -22,-3.8 -66,-0.3 -2,-0.4 -23,-0.0 -0.418 79.6 84.1 -71.1 148.0 -9.1 3.8 10.0 70 70 A K - 0 0 26 -2,-0.1 -1,-0.2 3,-0.0 -67,-0.2 -0.458 55.7-168.6 157.4 -69.1 -9.3 7.7 10.0 71 71 A R + 0 0 166 -3,-0.4 -67,-0.1 -69,-0.2 3,-0.1 0.686 68.2 47.4 59.0 128.5 -12.6 8.8 8.5 72 72 A G S S+ 0 0 76 1,-0.4 2,-0.2 -69,-0.2 -1,-0.1 0.112 92.9 98.2 98.1 -23.4 -13.1 12.5 7.7 73 73 A T + 0 0 48 1,-0.1 -1,-0.4 2,-0.1 -2,-0.1 -0.585 46.5 179.6 -95.3 161.0 -9.7 12.7 5.9 74 74 A K S >> S- 0 0 161 -2,-0.2 4,-1.6 -3,-0.1 3,-0.7 0.177 72.3 -8.7-125.7-113.1 -9.1 12.4 2.1 75 75 A T H 3> S+ 0 0 60 1,-0.2 4,-3.9 2,-0.2 5,-0.3 0.909 128.6 67.4 -59.0 -36.4 -5.8 12.6 0.3 76 76 A K H 3> S+ 0 0 137 1,-0.3 4,-2.7 2,-0.2 -1,-0.2 0.932 99.7 49.2 -51.1 -41.6 -4.2 13.6 3.6 77 77 A L H <> S+ 0 0 3 -3,-0.7 4,-3.8 1,-0.2 -1,-0.3 0.954 111.6 49.2 -61.9 -44.2 -5.0 10.1 4.8 78 78 A M H X S+ 0 0 14 -4,-1.6 4,-3.2 2,-0.2 5,-0.3 0.932 107.8 53.7 -61.5 -41.5 -3.4 8.8 1.6 79 79 A I H X S+ 0 0 45 -4,-3.9 4,-1.8 1,-0.2 -1,-0.2 0.967 113.8 42.7 -58.2 -47.0 -0.4 11.0 2.3 80 80 A E H X S+ 0 0 64 -4,-2.7 4,-1.9 -5,-0.3 5,-0.3 0.937 111.4 54.3 -65.8 -42.2 -0.2 9.4 5.8 81 81 A L H X S+ 0 0 0 -4,-3.8 4,-3.0 1,-0.3 5,-0.3 0.954 110.7 46.8 -57.5 -41.8 -0.8 5.9 4.4 82 82 A A H X S+ 0 0 0 -4,-3.2 4,-3.4 -5,-0.2 5,-0.3 0.859 102.7 66.4 -66.2 -31.0 2.1 6.6 2.0 83 83 A R H X S+ 0 0 147 -4,-1.8 4,-0.7 -5,-0.3 -2,-0.2 0.968 114.6 27.4 -56.5 -50.3 4.0 7.8 5.1 84 84 A K H >X S+ 0 0 53 -4,-1.9 4,-1.5 2,-0.2 3,-0.6 0.939 124.8 49.2 -76.8 -47.1 4.0 4.3 6.6 85 85 A I H 3X S+ 0 0 0 -4,-3.0 4,-2.2 -5,-0.3 5,-0.3 0.908 104.1 60.6 -60.1 -40.0 3.8 2.4 3.2 86 86 A A H 3X S+ 0 0 32 -4,-3.4 4,-2.5 -5,-0.3 -1,-0.2 0.863 101.2 55.8 -59.2 -30.0 6.7 4.5 1.8 87 87 A E H > - 0 0 109 -2,-0.3 4,-1.6 1,-0.1 3,-0.7 -0.873 46.2 -90.5-134.3 168.6 18.4 -6.8 -1.8 97 97 A K H 3> S+ 0 0 174 -2,-0.3 4,-0.9 1,-0.3 3,-0.3 0.877 126.3 57.0 -47.9 -38.0 18.5 -10.5 -2.7 98 98 A D H 34 S+ 0 0 81 1,-0.2 6,-0.3 2,-0.1 -1,-0.3 0.937 122.5 24.5 -61.8 -43.5 22.3 -10.4 -2.3 99 99 A K H <4 S+ 0 0 133 -3,-0.7 -1,-0.2 4,-0.1 -2,-0.2 0.320 105.0 88.4-102.3 7.9 22.0 -9.1 1.3 100 100 A K H < S- 0 0 120 -4,-1.6 -3,-0.2 -3,-0.3 -2,-0.1 0.984 113.4 -20.4 -71.0 -56.9 18.5 -10.5 1.9 101 101 A K S < S+ 0 0 190 -4,-0.9 2,-0.4 1,-0.4 -3,-0.1 0.667 130.3 27.4-117.1 -76.1 19.4 -14.0 3.2 102 102 A K S S- 0 0 175 -5,-0.3 -1,-0.4 1,-0.0 2,-0.3 -0.743 75.8-130.2 -94.4 138.9 22.9 -15.2 2.4 103 103 A K 0 0 169 -2,-0.4 -4,-0.1 -4,-0.1 -5,-0.1 -0.658 360.0 360.0 -87.2 140.4 25.8 -12.7 1.8 104 104 A K 0 0 248 -2,-0.3 -6,-0.0 -6,-0.3 0, 0.0 -0.959 360.0 360.0-128.5 360.0 27.9 -13.1 -1.3