==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-JAN-02 1KVV . COMPND 2 MOLECULE: SRP19; . SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; . AUTHOR O.N.PAKHOMOVA,S.DEEP,Q.HUANG,C.ZWIEB,A.P.HINCK . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8761.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 9.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 29.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 209 0, 0.0 2,-0.1 0, 0.0 69,-0.1 0.000 360.0 360.0 360.0 25.0 -10.6 2.4 16.4 2 2 A K - 0 0 115 69,-0.1 2,-0.4 66,-0.0 69,-0.2 -0.285 360.0 -89.4-117.9-155.9 -12.9 2.5 13.4 3 3 A E + 0 0 121 66,-0.3 2,-0.4 67,-0.2 66,-0.2 -0.973 33.2 177.1-128.7 137.2 -12.8 1.1 9.9 4 4 A S E -A 68 0A 20 64,-1.2 64,-2.3 -2,-0.4 2,-0.5 -0.994 17.5-145.7-134.8 139.7 -11.4 2.7 6.6 5 5 A V E +A 67 0A 77 -2,-0.4 2,-0.4 62,-0.3 62,-0.3 -0.901 22.4 169.4-110.3 125.4 -11.2 1.1 3.1 6 6 A V E -A 66 0A 2 60,-3.7 60,-2.9 -2,-0.5 2,-0.2 -0.987 21.5-142.4-131.3 139.7 -8.3 1.9 0.8 7 7 A W E > -A 65 0A 110 -2,-0.4 4,-0.9 58,-0.2 58,-0.2 -0.540 25.9-115.1 -95.1 167.8 -7.3 0.3 -2.4 8 8 A T T 4 S+ 0 0 13 56,-0.9 4,-0.2 1,-0.2 -1,-0.1 0.875 114.4 57.1 -68.3 -35.1 -3.7 -0.4 -3.6 9 9 A V T >4 S+ 0 0 6 1,-0.2 3,-1.9 2,-0.2 6,-0.3 0.885 93.5 66.1 -65.8 -39.2 -4.3 2.0 -6.6 10 10 A N T 34 S+ 0 0 1 1,-0.3 13,-1.0 11,-0.2 12,-0.5 0.955 104.0 44.0 -49.7 -56.3 -5.2 5.0 -4.4 11 11 A L T 3< S+ 0 0 6 -4,-0.9 18,-1.8 11,-0.1 2,-0.6 0.534 97.6 97.1 -68.7 -1.7 -1.7 5.3 -2.8 12 12 A D X - 0 0 1 -3,-1.9 3,-0.6 8,-0.3 11,-0.2 -0.771 58.0-163.3 -93.4 125.0 -0.2 4.7 -6.3 13 13 A S T 3 S+ 0 0 38 -2,-0.6 -1,-0.2 1,-0.2 12,-0.1 0.906 88.7 65.1 -70.5 -39.9 0.9 7.9 -8.2 14 14 A K T 3 S+ 0 0 144 15,-0.1 2,-0.8 1,-0.1 -1,-0.2 0.757 89.3 80.4 -56.1 -20.0 1.1 6.1 -11.5 15 15 A K S < S- 0 0 39 -3,-0.6 -1,-0.1 -6,-0.3 5,-0.1 -0.775 78.8-148.4 -92.1 111.7 -2.7 5.6 -11.2 16 16 A S > - 0 0 76 -2,-0.8 4,-1.8 1,-0.1 3,-0.3 -0.101 37.2 -86.6 -69.5 175.9 -4.5 8.8 -12.3 17 17 A R T 4 S+ 0 0 211 1,-0.3 4,-0.4 2,-0.2 3,-0.1 0.904 132.3 54.5 -52.9 -40.3 -7.8 9.9 -10.7 18 18 A A T 4 S+ 0 0 99 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.929 106.9 50.8 -61.7 -39.9 -9.6 7.7 -13.3 19 19 A E T 4 S- 0 0 102 -3,-0.3 -1,-0.2 -5,-0.1 -2,-0.2 0.832 134.2 -89.2 -66.4 -29.1 -7.5 4.8 -12.1 20 20 A G < + 0 0 17 -4,-1.8 2,-0.5 -3,-0.1 -8,-0.3 0.654 59.2 174.1 118.8 71.5 -8.5 5.6 -8.5 21 21 A R + 0 0 96 -4,-0.4 -11,-0.2 1,-0.1 -10,-0.1 -0.922 17.8 153.3-113.1 126.2 -6.1 8.0 -6.8 22 22 A R + 0 0 138 -12,-0.5 -11,-0.1 -2,-0.5 56,-0.1 0.225 52.0 89.5-130.1 10.3 -6.7 9.4 -3.3 23 23 A I S S- 0 0 3 -13,-1.0 2,-0.1 -11,-0.2 5,-0.1 -0.890 78.7-112.0-113.0 143.9 -3.1 10.1 -2.2 24 24 A P >> - 0 0 37 0, 0.0 3,-0.8 0, 0.0 4,-0.7 -0.395 23.4-123.2 -71.1 146.7 -1.2 13.3 -2.7 25 25 A R T 34 S+ 0 0 193 1,-0.2 3,-0.3 2,-0.2 -12,-0.1 0.793 104.5 72.4 -60.0 -28.9 1.8 13.1 -5.1 26 26 A R T 34 S+ 0 0 208 1,-0.2 -1,-0.2 3,-0.0 -3,-0.0 0.904 118.1 14.5 -58.5 -40.8 4.1 14.4 -2.3 27 27 A F T <4 S+ 0 0 106 -3,-0.8 -1,-0.2 2,-0.0 -2,-0.2 0.217 96.8 127.1-118.6 14.6 4.0 11.1 -0.4 28 28 A A < - 0 0 12 -4,-0.7 -16,-0.2 -3,-0.3 -17,-0.1 -0.481 53.0-139.0 -74.4 143.3 2.5 8.8 -3.0 29 29 A V - 0 0 2 -18,-1.8 2,-0.2 -2,-0.2 -16,-0.1 -0.888 16.4-133.6-105.4 113.0 4.4 5.6 -3.9 30 30 A P S S+ 0 0 60 0, 0.0 -18,-0.1 0, 0.0 -19,-0.0 -0.428 82.4 17.3 -65.6 131.0 4.4 4.8 -7.6 31 31 A N S S- 0 0 111 -2,-0.2 -22,-0.0 -22,-0.1 -18,-0.0 0.784 96.7-103.1 72.6 110.3 3.5 1.2 -8.3 32 32 A V - 0 0 38 1,-0.1 2,-0.5 30,-0.1 3,-0.1 -0.314 35.0-153.5 -62.9 144.3 1.8 -0.5 -5.3 33 33 A K >> - 0 0 32 1,-0.2 4,-2.7 -25,-0.1 3,-0.7 -0.925 16.1-159.1-127.0 113.4 4.1 -2.8 -3.3 34 34 A L H 3>>S+ 0 0 119 -2,-0.5 4,-2.1 1,-0.3 5,-0.7 0.937 99.3 57.9 -54.1 -41.4 2.8 -5.8 -1.3 35 35 A H H 3>5S+ 0 0 130 1,-0.2 4,-0.7 2,-0.2 -1,-0.3 0.894 111.3 42.2 -57.1 -36.7 6.0 -5.7 0.7 36 36 A E H <>5S+ 0 0 3 -3,-0.7 4,-1.4 3,-0.2 -2,-0.2 0.940 115.9 46.0 -76.9 -48.3 5.2 -2.0 1.7 37 37 A L H X5S+ 0 0 9 -4,-2.7 4,-1.3 2,-0.2 -2,-0.2 0.978 122.6 32.2 -62.6 -54.9 1.4 -2.4 2.4 38 38 A V H X5S+ 0 0 65 -4,-2.1 4,-1.9 -5,-0.2 3,-0.3 0.976 117.8 53.6 -68.9 -51.8 1.5 -5.6 4.5 39 39 A E H XX S+ 0 0 1 -4,-1.4 4,-0.8 1,-0.2 3,-0.7 0.972 105.5 44.4 -66.5 -51.2 3.6 -1.5 7.2 41 41 A S H >X>S+ 0 0 27 -4,-1.3 4,-1.6 -3,-0.3 3,-0.9 0.878 106.1 62.9 -61.3 -35.3 0.8 -2.9 9.3 42 42 A K H 3<5S+ 0 0 158 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.875 93.6 63.3 -58.9 -34.9 3.2 -5.4 10.8 43 43 A E H <<5S+ 0 0 110 -4,-1.2 -1,-0.3 -3,-0.7 -2,-0.2 0.866 116.3 28.4 -60.2 -34.0 5.2 -2.6 12.3 44 44 A L H <<5S- 0 0 96 -3,-0.9 -1,-0.2 -4,-0.8 -2,-0.2 0.513 97.6-136.4-104.9 -5.3 2.2 -1.5 14.5 45 45 A G T <5S+ 0 0 61 -4,-1.6 -3,-0.2 -5,-0.2 -4,-0.1 0.456 88.8 32.5 66.5 -3.9 0.6 -5.0 14.7 46 46 A L S S+ 0 0 165 -2,-0.2 4,-1.5 -3,-0.1 3,-0.3 0.478 72.4 9.7-121.2 -94.9 -9.8 10.6 4.6 75 75 A T H > S+ 0 0 65 1,-0.2 4,-3.8 2,-0.2 5,-0.2 0.905 121.0 65.3 -60.9 -38.6 -6.6 11.5 2.7 76 76 A K H > S+ 0 0 150 1,-0.3 4,-3.9 2,-0.3 5,-0.3 0.952 101.1 50.4 -51.2 -46.2 -4.8 12.2 6.0 77 77 A L H > S+ 0 0 2 -3,-0.3 4,-4.7 1,-0.2 5,-0.3 0.951 111.0 48.9 -55.9 -43.7 -5.2 8.5 6.9 78 78 A M H X S+ 0 0 11 -4,-1.5 4,-4.0 2,-0.2 5,-0.3 0.945 110.3 51.0 -62.3 -40.8 -3.7 7.9 3.4 79 79 A I H X S+ 0 0 45 -4,-3.8 4,-2.4 2,-0.2 -2,-0.2 0.964 115.5 41.9 -60.3 -46.7 -0.9 10.3 4.3 80 80 A E H X S+ 0 0 68 -4,-3.9 4,-2.0 -5,-0.2 5,-0.3 0.970 116.5 47.5 -65.2 -49.1 -0.4 8.4 7.6 81 81 A L H X S+ 0 0 2 -4,-4.7 4,-3.2 -5,-0.3 5,-0.3 0.951 114.0 47.9 -58.1 -43.3 -0.7 5.0 5.9 82 82 A A H X S+ 0 0 0 -4,-4.0 4,-4.5 -5,-0.3 5,-0.3 0.893 103.8 62.9 -63.8 -34.7 1.7 6.3 3.1 83 83 A R H X S+ 0 0 164 -4,-2.4 4,-1.2 -5,-0.3 -1,-0.2 0.956 112.7 34.5 -56.1 -46.0 3.9 7.5 5.9 84 84 A K H X S+ 0 0 59 -4,-2.0 4,-1.6 2,-0.2 -2,-0.2 0.951 122.2 46.9 -72.8 -47.4 4.4 3.9 7.1 85 85 A I H X S+ 0 0 0 -4,-3.2 4,-2.4 -5,-0.3 5,-0.2 0.896 107.5 57.9 -61.1 -39.3 4.2 2.4 3.6 86 86 A A H X S+ 0 0 29 -4,-4.5 4,-2.8 -5,-0.3 -1,-0.2 0.899 101.7 55.8 -60.9 -38.6 6.7 5.1 2.3 87 87 A E H X S+ 0 0 102 -4,-1.2 4,-2.4 -5,-0.3 -1,-0.2 0.984 107.8 47.0 -59.8 -54.5 9.3 3.9 4.8 88 88 A I H X S+ 0 0 5 -4,-1.6 4,-1.7 2,-0.2 -2,-0.2 0.936 111.0 51.6 -56.0 -41.8 9.2 0.3 3.6 89 89 A R H >X S+ 0 0 91 -4,-2.4 4,-1.0 1,-0.3 3,-0.5 0.970 111.2 49.1 -57.2 -45.5 9.4 1.6 -0.0 90 90 A E H 3X S+ 0 0 90 -4,-2.8 4,-2.5 1,-0.2 -1,-0.3 0.841 100.9 64.3 -61.7 -31.3 12.4 3.5 1.2 91 91 A Q H 3X S+ 0 0 65 -4,-2.4 4,-2.0 1,-0.3 -1,-0.2 0.931 100.1 52.1 -60.5 -39.3 13.8 0.3 2.8 92 92 A K H << S+ 0 0 128 -4,-1.7 -1,-0.3 -3,-0.5 -2,-0.2 0.836 108.5 52.5 -64.9 -29.0 14.0 -1.1 -0.7 93 93 A R H < S+ 0 0 153 -4,-1.0 -2,-0.2 -3,-0.2 -1,-0.2 0.943 107.0 49.9 -72.5 -46.7 16.0 2.0 -1.7 94 94 A E H < S+ 0 0 119 -4,-2.5 2,-0.4 1,-0.2 -2,-0.2 0.900 125.8 25.6 -60.0 -39.4 18.5 1.7 1.2 95 95 A Q < - 0 0 104 -4,-2.0 -1,-0.2 -5,-0.2 0, 0.0 -0.983 62.8-172.8-126.5 134.7 19.2 -2.0 0.3 96 96 A K - 0 0 108 -2,-0.4 -4,-0.1 -3,-0.1 -3,-0.1 -0.098 54.2-100.9-119.6 39.9 18.7 -3.5 -3.2 97 97 A K S S+ 0 0 154 1,-0.2 -5,-0.0 4,-0.0 -2,-0.0 0.773 121.0 62.6 52.2 20.0 19.2 -7.2 -2.6 98 98 A D S > S+ 0 0 90 3,-0.1 4,-1.5 4,-0.0 -1,-0.2 0.493 89.4 55.7-138.7 -45.4 22.6 -6.5 -4.0 99 99 A K T 4 S+ 0 0 122 1,-0.2 -4,-0.1 2,-0.2 -5,-0.0 0.878 124.7 29.4 -62.6 -34.1 24.4 -4.1 -1.7 100 100 A K T 4 S+ 0 0 107 1,-0.1 -1,-0.2 3,-0.1 -5,-0.0 0.697 107.8 73.4 -96.9 -23.9 23.8 -6.6 1.1 101 101 A K T 4 S+ 0 0 128 1,-0.2 2,-0.7 2,-0.0 -2,-0.2 0.944 99.7 46.5 -57.1 -47.0 23.8 -9.7 -1.0 102 102 A K S < S- 0 0 131 -4,-1.5 2,-0.8 2,-0.0 -1,-0.2 -0.846 76.1-168.9 -99.8 112.4 27.6 -9.5 -1.5 103 103 A K 0 0 180 -2,-0.7 -3,-0.1 -3,-0.0 -4,-0.0 -0.841 360.0 360.0-105.0 105.9 29.4 -8.9 1.8 104 104 A K 0 0 226 -2,-0.8 -2,-0.0 0, 0.0 0, 0.0 -0.826 360.0 360.0-175.5 360.0 33.0 -8.0 1.4