==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 15-MAR-10 2KVI . COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR R.PERGOLI,K.KUBICEK,F.HOBOR,J.PASULKA,R.STEFL . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5731.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 62.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 27.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 22.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 115 0, 0.0 2,-0.4 0, 0.0 75,-0.0 0.000 360.0 360.0 360.0 175.3 18.8 33.5 14.9 2 2 A K + 0 0 98 43,-0.1 72,-0.5 72,-0.1 2,-0.3 -0.904 360.0 162.7-110.0 144.4 22.1 34.3 16.7 3 3 A S E -AB 44 73A 1 41,-1.6 41,-1.7 -2,-0.4 2,-0.4 -0.885 27.7-123.9-150.6 167.1 22.7 33.6 20.4 4 4 A R E -AB 43 72A 121 68,-3.0 68,-1.7 39,-0.3 2,-0.4 -0.987 15.4-172.2-136.8 127.6 25.7 33.2 22.8 5 5 A L E -AB 42 71A 5 37,-2.7 37,-2.5 -2,-0.4 2,-0.4 -0.962 8.3-162.4-118.8 129.0 26.8 30.4 25.2 6 6 A F E -AB 41 70A 64 64,-2.3 64,-1.6 -2,-0.4 2,-0.3 -0.922 8.5-177.8-111.9 139.6 29.6 30.7 27.8 7 7 A I E -AB 40 69A 4 33,-2.3 33,-2.2 -2,-0.4 2,-0.3 -0.999 6.4-174.1-135.6 139.9 31.5 27.8 29.5 8 8 A G E +A 39 0A 0 60,-2.7 2,-1.1 -2,-0.3 60,-0.4 -0.917 69.5 4.3-121.8 155.9 34.3 27.6 32.2 9 9 A N S S+ 0 0 90 29,-2.2 3,-0.3 -2,-0.3 30,-0.1 0.083 114.4 73.2 61.8 -17.3 36.2 24.6 33.6 10 10 A L S > S+ 0 0 69 -2,-1.1 2,-1.1 58,-0.2 3,-0.9 0.910 84.9 59.2 -83.6 -47.6 34.5 22.0 31.2 11 11 A P T 3 S+ 0 0 15 0, 0.0 28,-0.2 0, 0.0 -1,-0.1 -0.047 74.6 101.7 -82.5 35.4 36.3 22.8 27.7 12 12 A L T 3 + 0 0 86 -2,-1.1 2,-0.1 -3,-0.3 3,-0.1 0.797 64.0 77.7 -91.2 -32.2 39.8 22.1 29.1 13 13 A K S < S- 0 0 176 -3,-0.9 -3,-0.0 1,-0.1 0, 0.0 -0.463 111.4 -70.8 -65.1 148.7 40.0 18.6 27.5 14 14 A N + 0 0 153 -2,-0.1 2,-0.3 1,-0.0 -1,-0.1 -0.138 64.1 178.1 -50.4 133.9 40.7 18.9 23.7 15 15 A V + 0 0 52 -4,-0.1 2,-0.3 -3,-0.1 20,-0.1 -0.999 16.4 173.4-145.4 140.8 37.8 20.3 21.6 16 16 A S >> - 0 0 76 -2,-0.3 4,-1.4 1,-0.0 3,-0.8 -0.846 53.6 -83.8-135.8 172.7 37.0 21.1 18.0 17 17 A K H 3> S+ 0 0 154 -2,-0.3 4,-2.0 1,-0.2 5,-0.1 0.837 125.3 51.0 -52.5 -39.5 33.7 22.2 16.3 18 18 A E H 3> S+ 0 0 130 2,-0.2 4,-2.8 3,-0.2 -1,-0.2 0.849 105.2 56.4 -69.1 -33.5 32.4 18.7 15.8 19 19 A D H <> S+ 0 0 53 -3,-0.8 4,-2.2 2,-0.2 5,-0.2 0.972 114.9 36.5 -63.2 -53.7 32.9 17.7 19.5 20 20 A L H X S+ 0 0 6 -4,-1.4 4,-1.8 1,-0.2 -1,-0.2 0.858 115.7 57.9 -67.0 -33.0 30.8 20.5 20.8 21 21 A F H X S+ 0 0 106 -4,-2.0 4,-1.8 -5,-0.3 -2,-0.2 0.944 112.1 38.6 -62.4 -48.1 28.4 20.2 17.8 22 22 A R H < S+ 0 0 146 -4,-2.8 -2,-0.2 2,-0.2 -1,-0.2 0.878 116.1 50.4 -75.9 -35.1 27.6 16.4 18.6 23 23 A I H < S+ 0 0 63 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.813 123.3 32.4 -73.1 -26.4 27.5 16.8 22.5 24 24 A F H >X S+ 0 0 2 -4,-1.8 4,-2.3 -5,-0.2 3,-1.5 0.637 91.8 96.7 -99.7 -16.3 25.1 19.8 22.1 25 25 A S T 3< S+ 0 0 52 -4,-1.8 -2,-0.1 1,-0.3 -3,-0.1 0.814 90.0 40.4 -46.1 -48.2 23.1 18.8 18.9 26 26 A P T 34 S+ 0 0 111 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.709 118.8 49.1 -75.5 -17.7 20.1 17.2 20.8 27 27 A Y T <4 S- 0 0 77 -3,-1.5 2,-0.3 1,-0.2 -2,-0.2 0.805 122.5 -0.6 -87.4 -34.3 20.1 20.1 23.4 28 28 A G < - 0 0 4 -4,-2.3 -1,-0.2 24,-0.1 18,-0.1 -0.948 63.4-109.3-160.0 173.1 20.2 23.1 21.0 29 29 A H - 0 0 130 16,-0.8 17,-0.1 -2,-0.3 -4,-0.1 0.619 51.4-161.5 -94.6 -13.6 20.4 24.4 17.5 30 30 A I - 0 0 18 15,-0.5 14,-0.3 16,-0.2 16,-0.0 0.655 21.6-173.5 57.4 151.7 24.1 25.8 17.4 31 31 A M - 0 0 106 12,-1.9 2,-0.3 1,-0.2 13,-0.2 0.411 53.3 -19.4-136.1 -71.1 25.9 28.3 15.1 32 32 A Q E -C 43 0A 120 11,-1.5 11,-2.6 2,-0.0 2,-0.3 -0.965 55.2-116.9-154.0 158.4 29.7 28.9 15.4 33 33 A I E +C 42 0A 72 -2,-0.3 9,-0.2 9,-0.2 2,-0.1 -0.712 22.7 169.3-107.5 154.0 32.7 28.5 17.8 34 34 A N E +C 41 0A 84 7,-2.5 7,-2.0 -2,-0.3 2,-0.4 -0.579 20.3 169.9-155.8 93.0 35.2 30.7 19.7 35 35 A I E +C 40 0A 48 5,-0.2 2,-0.3 -2,-0.1 5,-0.2 -0.879 5.9 146.8-115.5 135.7 37.3 28.7 22.4 36 36 A K E > -C 39 0A 155 3,-0.5 3,-0.6 -2,-0.4 -2,-0.0 -0.941 50.4 -6.2-161.4 146.8 40.4 29.9 24.4 37 37 A N T 3 S- 0 0 136 -2,-0.3 2,-0.7 1,-0.2 -1,-0.1 -0.091 116.4 -31.2 63.7-164.0 42.0 29.4 27.9 38 38 A A T 3 S+ 0 0 35 -3,-0.1 -29,-2.2 -30,-0.0 2,-0.2 0.005 132.0 60.1 -70.4 30.1 40.2 27.4 30.8 39 39 A F E < -AC 8 36A 71 -2,-0.7 -3,-0.5 -3,-0.6 2,-0.3 -0.827 66.7-156.1-145.7 174.4 36.9 28.7 29.1 40 40 A G E -AC 7 35A 0 -33,-2.2 -33,-2.3 -2,-0.2 2,-0.4 -0.910 4.3-153.1-165.0 143.0 35.0 28.5 25.8 41 41 A F E -AC 6 34A 69 -7,-2.0 -7,-2.5 -2,-0.3 2,-0.4 -0.920 12.3-178.1-118.4 140.5 32.4 30.5 23.9 42 42 A I E -AC 5 33A 2 -37,-2.5 -37,-2.7 -2,-0.4 2,-0.3 -0.975 19.2-141.4-139.4 123.8 30.0 29.2 21.4 43 43 A Q E -AC 4 32A 47 -11,-2.6 -12,-1.9 -2,-0.4 -11,-1.5 -0.680 30.5-172.2 -81.8 143.4 27.4 31.1 19.3 44 44 A F E -A 3 0A 0 -41,-1.7 -41,-1.6 -2,-0.3 2,-0.4 -0.780 29.8-110.4-127.6 164.9 24.1 29.3 18.9 45 45 A D S S+ 0 0 41 -2,-0.2 -16,-0.8 -43,-0.2 -15,-0.5 -0.893 92.2 9.1 -93.5 137.7 20.7 29.4 17.2 46 46 A N > - 0 0 52 -2,-0.4 4,-1.4 -17,-0.1 -17,-0.3 0.866 69.7-128.2 58.8 124.7 17.8 30.2 19.7 47 47 A P H > S+ 0 0 45 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.789 108.9 58.6 -74.8 -24.3 18.6 31.3 23.4 48 48 A Q H > S+ 0 0 112 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.922 105.7 51.8 -64.3 -38.4 16.2 28.6 24.9 49 49 A S H > S+ 0 0 3 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.868 107.3 53.5 -64.3 -35.2 18.5 26.1 23.1 50 50 A V H X S+ 0 0 0 -4,-1.4 4,-1.9 2,-0.2 5,-0.3 0.939 110.7 44.8 -61.6 -50.9 21.5 27.9 24.7 51 51 A R H X S+ 0 0 91 -4,-2.2 4,-2.3 1,-0.2 5,-0.2 0.901 112.9 50.2 -69.2 -34.1 20.1 27.4 28.3 52 52 A D H X S+ 0 0 66 -4,-2.5 4,-1.2 2,-0.2 5,-0.4 0.872 109.0 55.6 -68.3 -33.2 19.1 23.8 27.6 53 53 A A H X>S+ 0 0 0 -4,-1.8 4,-2.5 -5,-0.2 5,-0.5 0.997 119.1 26.9 -58.7 -68.6 22.7 23.1 26.3 54 54 A I H X>S+ 0 0 0 -4,-1.9 5,-1.6 1,-0.2 4,-1.0 0.840 121.6 53.3 -72.6 -27.9 24.7 24.4 29.4 55 55 A E H <5S+ 0 0 63 -4,-2.3 5,-0.3 -5,-0.3 -1,-0.2 0.735 121.4 30.2 -80.2 -19.3 21.9 23.7 32.1 56 56 A C H <5S+ 0 0 92 -4,-1.2 -2,-0.2 -3,-0.5 -3,-0.2 0.726 130.6 35.1-107.4 -30.1 21.5 20.0 31.0 57 57 A E H <5S+ 0 0 71 -4,-2.5 -3,-0.2 -5,-0.4 -2,-0.1 0.893 136.1 17.1 -84.4 -46.4 25.0 19.2 29.8 58 58 A S T <> -D 67 0B 124 4,-2.9 4,-2.6 -2,-0.1 3,-1.8 -0.971 30.2-103.9-142.0 125.8 29.6 27.8 41.4 64 64 A G T 34 S- 0 0 55 -2,-0.3 4,-0.0 1,-0.3 0, 0.0 -0.116 97.8 -9.7 -55.2 134.4 32.5 30.2 42.0 65 65 A K T 34 S+ 0 0 212 1,-0.2 -1,-0.3 2,-0.0 3,-0.1 0.724 133.3 66.4 46.4 28.5 36.0 29.0 40.8 66 66 A K T <4 S- 0 0 123 -3,-1.8 2,-0.3 1,-0.1 -2,-0.2 0.543 111.4 -0.2-140.3 -47.7 34.5 25.5 40.2 67 67 A L B < -D 63 0B 38 -4,-2.6 -4,-2.9 2,-0.0 2,-0.4 -0.855 64.8-176.9-154.0 119.0 31.9 25.6 37.3 68 68 A I + 0 0 51 -60,-0.4 -60,-2.7 -2,-0.3 2,-0.3 -0.929 10.5 155.8-120.0 136.7 30.9 28.7 35.3 69 69 A L E -B 7 0A 28 -2,-0.4 2,-0.3 -62,-0.2 -62,-0.2 -0.959 15.1-166.2-145.6 163.9 28.3 29.1 32.6 70 70 A E E -B 6 0A 101 -64,-1.6 -64,-2.3 -2,-0.3 2,-0.4 -0.940 13.8-147.4-152.2 140.4 26.2 31.9 31.0 71 71 A V E +B 5 0A 66 -2,-0.3 2,-0.3 -66,-0.2 -66,-0.2 -0.833 28.9 175.0 -93.1 137.7 23.2 32.2 28.7 72 72 A S E -B 4 0A 23 -68,-1.7 -68,-3.0 -2,-0.4 2,-0.2 -0.983 12.8-173.1-148.2 139.0 23.2 35.3 26.4 73 73 A S E -B 3 0A 75 -2,-0.3 2,-0.3 -70,-0.2 -70,-0.2 -0.604 6.3-158.6-115.4 177.6 21.0 36.7 23.5 74 74 A S - 0 0 51 -72,-0.5 2,-0.2 -2,-0.2 -72,-0.1 -0.969 33.3 -84.3-150.6 161.1 21.3 39.7 21.1 75 75 A N - 0 0 151 -2,-0.3 2,-0.0 1,-0.1 -73,-0.0 -0.470 50.3-111.5 -67.1 139.6 19.0 41.9 18.9 76 76 A A 0 0 87 -2,-0.2 -1,-0.1 -75,-0.0 0, 0.0 -0.321 360.0 360.0 -69.7 156.3 18.2 40.4 15.5 77 77 A R 0 0 282 -2,-0.0 -2,-0.0 0, 0.0 0, 0.0 -0.301 360.0 360.0 55.0 360.0 19.6 42.1 12.2