==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-JAN-02 1KW4 . COMPND 2 MOLECULE: POLYHOMEOTIC; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR C.A.KIM,M.GINGERY,R.M PILPA,J.U.BOWIE . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4670.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 44.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A D 0 0 197 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -53.0 27.4 17.2 16.8 2 11 A R - 0 0 103 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.974 360.0-133.6-149.2 131.5 29.4 19.6 14.7 3 12 A P - 0 0 77 0, 0.0 5,-0.1 0, 0.0 0, 0.0 -0.257 57.4 -61.4 -75.6 175.8 33.2 20.0 14.2 4 13 A P > - 0 0 91 0, 0.0 3,-2.0 0, 0.0 4,-0.4 -0.287 46.1-125.7 -58.0 140.5 34.7 23.5 14.4 5 14 A I G > S+ 0 0 12 1,-0.3 3,-2.1 2,-0.2 35,-0.1 0.884 109.1 65.1 -55.7 -38.9 33.3 25.9 11.8 6 15 A S G 3 S+ 0 0 66 1,-0.3 32,-0.4 31,-0.2 -1,-0.3 0.717 100.8 52.5 -58.0 -19.1 36.9 26.6 10.6 7 16 A S G < S+ 0 0 67 -3,-2.0 -1,-0.3 30,-0.1 -2,-0.2 0.515 83.0 117.5 -94.0 -6.9 37.1 23.0 9.5 8 17 A W < - 0 0 13 -3,-2.1 29,-2.5 -4,-0.4 30,-0.4 -0.368 55.1-142.2 -67.2 136.9 33.9 23.0 7.4 9 18 A S > - 0 0 50 27,-0.2 4,-2.2 28,-0.1 5,-0.2 -0.292 32.4 -98.1 -86.1 176.8 34.1 22.3 3.7 10 19 A V H > S+ 0 0 39 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.921 128.3 50.4 -62.5 -42.1 32.0 24.0 1.0 11 20 A D H > S+ 0 0 105 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.889 107.9 52.9 -62.9 -38.7 29.7 21.0 1.0 12 21 A D H > S+ 0 0 71 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.917 109.3 48.8 -62.1 -44.8 29.4 21.2 4.8 13 22 A V H X S+ 0 0 0 -4,-2.2 4,-2.4 1,-0.2 5,-0.2 0.897 107.3 55.6 -62.8 -39.3 28.4 24.8 4.6 14 23 A S H X S+ 0 0 11 -4,-2.1 4,-2.1 1,-0.2 -1,-0.2 0.860 108.2 48.1 -63.3 -34.2 25.8 24.0 1.9 15 24 A N H X S+ 0 0 92 -4,-1.6 4,-1.4 2,-0.2 -1,-0.2 0.864 109.2 53.6 -72.8 -35.1 24.2 21.5 4.2 16 25 A F H < S+ 0 0 8 -4,-1.8 4,-0.5 2,-0.2 3,-0.2 0.928 111.8 44.7 -62.8 -46.2 24.2 24.0 7.1 17 26 A I H >< S+ 0 0 0 -4,-2.4 3,-1.3 1,-0.2 6,-0.3 0.906 107.4 59.2 -65.8 -41.5 22.4 26.5 4.9 18 27 A R H 3< S+ 0 0 132 -4,-2.1 -1,-0.2 1,-0.3 6,-0.2 0.836 108.0 46.2 -56.3 -34.9 19.9 23.9 3.6 19 28 A E T 3< S+ 0 0 146 -4,-1.4 -1,-0.3 -3,-0.2 -2,-0.2 0.489 87.2 101.4 -89.8 -5.1 18.7 23.2 7.2 20 29 A L S X S- 0 0 21 -3,-1.3 3,-2.3 -4,-0.5 4,-0.4 -0.710 87.2-102.6 -82.9 123.9 18.3 26.8 8.3 21 30 A P T 3 S+ 0 0 89 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.166 101.1 2.7 -49.1 122.8 14.6 27.8 8.3 22 31 A G T 3 S+ 0 0 49 -4,-0.1 3,-0.1 1,-0.0 -4,-0.1 0.529 109.5 91.7 78.9 8.4 13.9 30.0 5.2 23 32 A C X + 0 0 0 -3,-2.3 3,-2.2 -6,-0.3 4,-0.2 0.429 46.5 103.5-113.6 0.7 17.3 29.8 3.7 24 33 A Q G > S+ 0 0 106 -4,-0.4 3,-1.2 1,-0.3 4,-0.3 0.745 71.6 66.7 -56.9 -26.1 17.0 26.8 1.4 25 34 A D G 3 S+ 0 0 136 1,-0.2 -1,-0.3 -3,-0.1 4,-0.2 0.591 98.0 55.6 -72.4 -7.9 16.7 28.9 -1.7 26 35 A Y G <> S+ 0 0 32 -3,-2.2 4,-1.9 1,-0.1 3,-0.3 0.382 73.4 100.2-105.9 4.0 20.3 30.1 -1.3 27 36 A V H <> S+ 0 0 23 -3,-1.2 4,-1.8 1,-0.2 5,-0.2 0.918 83.8 49.3 -56.1 -47.4 22.1 26.7 -1.2 28 37 A D H > S+ 0 0 125 -4,-0.3 4,-2.7 1,-0.2 -1,-0.2 0.843 107.3 55.9 -63.6 -32.4 23.3 26.9 -4.8 29 38 A D H > S+ 0 0 55 -3,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.905 106.7 49.3 -66.1 -41.8 24.6 30.4 -4.3 30 39 A F H <>S+ 0 0 1 -4,-1.9 5,-2.2 2,-0.2 -1,-0.2 0.903 113.7 46.5 -64.4 -39.6 26.8 29.3 -1.4 31 40 A I H ><5S+ 0 0 69 -4,-1.8 3,-1.4 1,-0.2 -2,-0.2 0.941 112.1 50.4 -67.3 -45.6 28.2 26.4 -3.5 32 41 A Q H 3<5S+ 0 0 140 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.843 112.2 46.6 -61.3 -36.0 28.8 28.7 -6.5 33 42 A Q T 3<5S- 0 0 111 -4,-2.1 -1,-0.3 -5,-0.2 -2,-0.2 0.388 109.8-126.2 -88.2 4.9 30.7 31.2 -4.4 34 43 A E T < 5 - 0 0 152 -3,-1.4 2,-0.8 1,-0.2 -3,-0.2 0.898 38.5-179.3 50.7 52.0 32.7 28.4 -2.8 35 44 A I < + 0 0 18 -5,-2.2 -1,-0.2 -25,-0.1 -22,-0.2 -0.723 4.1 173.2 -84.4 108.3 31.9 29.5 0.8 36 45 A D > - 0 0 63 -2,-0.8 4,-2.5 -23,-0.1 -27,-0.2 -0.409 51.0 -81.0-101.4-175.0 33.7 27.1 3.2 37 46 A G H > S+ 0 0 0 -29,-2.5 4,-1.9 1,-0.2 -31,-0.2 0.878 128.0 52.7 -56.4 -44.1 33.8 27.4 7.0 38 47 A Q H > S+ 0 0 114 -30,-0.4 4,-0.5 -32,-0.4 -1,-0.2 0.894 113.6 44.5 -60.4 -39.5 36.7 29.9 7.0 39 48 A A H >> S+ 0 0 33 -3,-0.2 3,-1.1 1,-0.2 4,-0.9 0.883 108.0 58.3 -71.2 -39.2 34.7 32.2 4.6 40 49 A L H >< S+ 0 0 3 -4,-2.5 3,-0.6 1,-0.3 -2,-0.2 0.868 99.8 57.8 -58.2 -38.3 31.5 31.7 6.5 41 50 A L H 3< S+ 0 0 59 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.760 109.2 46.4 -64.7 -23.6 33.1 33.1 9.7 42 51 A R H << S+ 0 0 159 -3,-1.1 2,-0.2 -4,-0.5 -1,-0.2 0.586 83.4 115.9 -94.7 -13.8 33.9 36.3 7.7 43 52 A L << - 0 0 26 -4,-0.9 2,-0.2 -3,-0.6 -3,-0.0 -0.405 44.3-171.8 -64.1 123.2 30.5 36.8 6.1 44 53 A K >> - 0 0 106 -2,-0.2 4,-1.8 1,-0.1 3,-0.6 -0.701 40.1-102.3-109.9 165.1 28.7 40.0 7.3 45 54 A E H 3> S+ 0 0 79 -2,-0.2 4,-2.7 1,-0.2 5,-0.3 0.879 121.2 58.1 -53.1 -39.8 25.2 41.1 6.6 46 55 A K H 3>>S+ 0 0 108 1,-0.2 4,-2.1 2,-0.2 5,-1.0 0.874 106.1 47.6 -59.4 -41.0 26.5 43.6 4.0 47 56 A H H <4>S+ 0 0 68 -3,-0.6 5,-1.9 3,-0.2 6,-0.2 0.885 114.0 47.2 -68.1 -40.9 28.2 40.8 1.9 48 57 A L H <5S+ 0 0 0 -4,-1.8 6,-2.4 3,-0.2 -2,-0.2 0.951 122.6 32.6 -65.8 -52.3 25.0 38.6 2.1 49 58 A V H X5S+ 0 0 38 -4,-2.7 4,-0.6 4,-0.2 -2,-0.2 0.964 133.0 27.4 -71.7 -54.8 22.6 41.3 1.1 50 59 A N T <5S+ 0 0 126 -4,-2.1 -3,-0.2 -5,-0.3 -2,-0.1 0.983 130.9 33.0 -74.3 -60.1 24.8 43.4 -1.2 51 60 A A T 4 - 0 0 156 -2,-0.1 4,-1.9 1,-0.1 5,-0.2 -0.434 33.5-115.2 -71.7 152.0 16.9 39.2 1.4 56 65 A L H > S+ 0 0 97 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.843 108.2 57.5 -59.5 -39.2 17.5 40.7 4.8 57 66 A G H > S+ 0 0 37 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.965 110.6 40.9 -58.6 -57.5 15.6 38.2 6.9 58 67 A P H > S+ 0 0 20 0, 0.0 4,-2.0 0, 0.0 -1,-0.2 0.901 114.0 55.1 -58.6 -40.7 17.6 35.1 5.7 59 68 A A H X S+ 0 0 0 -4,-1.9 4,-2.0 1,-0.2 -2,-0.2 0.912 108.4 47.6 -59.8 -44.2 20.9 37.1 5.9 60 69 A L H X S+ 0 0 94 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.889 110.1 52.5 -64.8 -40.0 20.3 38.1 9.5 61 70 A K H X S+ 0 0 89 -4,-2.0 4,-2.1 -5,-0.2 -1,-0.2 0.872 109.1 49.6 -65.0 -37.9 19.4 34.5 10.5 62 71 A I H X S+ 0 0 2 -4,-2.0 4,-2.2 2,-0.2 5,-0.2 0.955 112.1 46.3 -66.9 -49.6 22.7 33.2 9.0 63 72 A V H X S+ 0 0 31 -4,-2.0 4,-2.0 1,-0.2 -2,-0.2 0.914 114.5 49.3 -58.7 -42.6 24.9 35.7 10.7 64 73 A A H X S+ 0 0 48 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.878 109.4 50.1 -65.1 -41.8 23.2 35.1 14.0 65 74 A K H X S+ 0 0 82 -4,-2.1 4,-2.0 2,-0.2 -1,-0.2 0.919 111.1 49.2 -64.8 -43.3 23.4 31.3 13.9 66 75 A V H X S+ 0 0 10 -4,-2.2 4,-2.8 1,-0.2 -2,-0.2 0.904 110.8 51.2 -62.1 -41.2 27.1 31.5 13.1 67 76 A E H < S+ 0 0 124 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.903 109.6 49.8 -62.7 -42.1 27.6 33.9 16.0 68 77 A S H < S+ 0 0 85 -4,-2.2 -1,-0.2 2,-0.2 -2,-0.2 0.869 114.7 43.5 -65.8 -38.3 25.8 31.6 18.4 69 78 A I H < 0 0 59 -4,-2.0 -2,-0.2 -5,-0.1 -1,-0.2 0.947 360.0 360.0 -71.8 -50.1 27.8 28.5 17.4 70 79 A K < 0 0 172 -4,-2.8 -2,-0.2 -5,-0.2 -3,-0.2 0.939 360.0 360.0 -57.1 360.0 31.1 30.3 17.4