==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 30-APR-10 2KXE . COMPND 2 MOLECULE: DNA POLYMERASE II SMALL SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; . AUTHOR K.YAMASAKI,I.MATSUI . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5569.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 68.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 43.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 186 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 -57.4 3.2 15.2 3.3 2 2 A D > - 0 0 75 1,-0.1 4,-3.0 0, 0.0 5,-0.2 -0.869 360.0 -91.0-146.8 178.7 2.1 13.9 -0.1 3 3 A E H > S+ 0 0 138 -2,-0.3 4,-2.8 2,-0.2 5,-0.2 0.937 124.8 46.9 -61.4 -48.6 -0.9 12.8 -2.2 4 4 A F H > S+ 0 0 3 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.915 116.7 44.1 -60.2 -45.0 -0.7 9.2 -1.0 5 5 A V H > S+ 0 0 14 1,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.888 116.9 45.8 -67.6 -40.4 -0.3 10.3 2.6 6 6 A K H X S+ 0 0 99 -4,-3.0 4,-1.5 1,-0.2 -2,-0.2 0.817 106.0 61.3 -72.3 -31.2 -3.0 12.9 2.3 7 7 A G H < S+ 0 0 9 -4,-2.8 4,-0.4 -5,-0.2 -1,-0.2 0.873 107.9 43.0 -63.2 -38.0 -5.3 10.5 0.5 8 8 A L H ><>S+ 0 0 0 -4,-1.3 5,-2.4 1,-0.2 3,-1.9 0.939 110.7 53.0 -73.1 -49.4 -5.4 8.1 3.5 9 9 A M H ><5S+ 0 0 105 -4,-1.8 3,-2.0 1,-0.3 -1,-0.2 0.787 96.6 71.0 -56.7 -27.8 -5.8 10.8 6.1 10 10 A K T 3<5S+ 0 0 156 -4,-1.5 -1,-0.3 1,-0.3 -2,-0.2 0.819 105.6 37.9 -58.9 -31.5 -8.8 12.1 4.1 11 11 A N T < 5S- 0 0 104 -3,-1.9 -1,-0.3 -4,-0.4 -2,-0.2 -0.036 126.5 -97.2-109.5 28.9 -10.7 8.9 5.2 12 12 A G T < 5S+ 0 0 51 -3,-2.0 2,-0.4 1,-0.2 -3,-0.2 0.810 81.2 142.1 61.3 30.0 -9.2 8.9 8.7 13 13 A Y < - 0 0 29 -5,-2.4 2,-0.3 -6,-0.1 -1,-0.2 -0.868 34.8-158.8-107.5 137.4 -6.6 6.4 7.7 14 14 A L E -a 48 0A 85 33,-1.5 35,-2.1 -2,-0.4 2,-0.3 -0.775 2.8-162.2-112.5 157.8 -3.0 6.4 8.9 15 15 A I E -a 49 0A 32 -2,-0.3 35,-0.2 33,-0.2 -6,-0.0 -0.999 14.7-130.6-143.0 136.9 0.1 4.8 7.4 16 16 A T >> - 0 0 36 33,-1.5 4,-2.4 -2,-0.3 3,-0.9 -0.504 23.3-120.9 -84.1 153.6 3.5 4.0 8.9 17 17 A P H 3> S+ 0 0 91 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.818 112.4 62.3 -61.6 -31.4 6.8 5.1 7.2 18 18 A S H 34 S+ 0 0 57 1,-0.2 4,-0.2 2,-0.2 32,-0.1 0.823 113.9 34.0 -64.2 -31.6 7.8 1.4 7.0 19 19 A A H <> S+ 0 0 0 -3,-0.9 4,-3.8 30,-0.2 5,-0.3 0.759 114.4 58.0 -93.1 -30.6 4.9 0.8 4.7 20 20 A Y H X S+ 0 0 53 -4,-2.4 4,-2.4 1,-0.2 5,-0.2 0.901 99.9 57.5 -66.2 -42.1 4.9 4.2 3.0 21 21 A Y H < S+ 0 0 185 -4,-2.4 4,-0.4 2,-0.2 -1,-0.2 0.787 120.7 30.3 -59.3 -27.9 8.4 3.7 1.7 22 22 A L H >> S+ 0 0 97 -3,-0.3 4,-1.4 -4,-0.2 3,-0.7 0.872 118.9 50.1 -96.2 -52.8 7.2 0.5 0.0 23 23 A L H 3X S+ 0 0 0 -4,-3.8 4,-1.6 1,-0.2 5,-0.2 0.808 104.1 64.6 -57.1 -30.4 3.6 1.3 -0.8 24 24 A V H 3X S+ 0 0 28 -4,-2.4 4,-3.7 -5,-0.3 5,-0.3 0.916 101.1 48.2 -60.2 -45.1 4.8 4.5 -2.3 25 25 A G H <> S+ 0 0 34 -3,-0.7 4,-1.5 -4,-0.4 -1,-0.2 0.885 114.9 44.4 -63.7 -40.0 6.8 2.7 -5.0 26 26 A H H <>S+ 0 0 3 -4,-1.4 5,-1.6 2,-0.2 6,-1.4 0.690 120.2 43.1 -77.4 -19.5 3.8 0.5 -5.9 27 27 A F H <5S+ 0 0 48 -4,-1.6 3,-0.3 -5,-0.2 -2,-0.2 0.868 113.0 48.3 -91.3 -45.3 1.5 3.5 -5.8 28 28 A N H <5S+ 0 0 116 -4,-3.7 -3,-0.2 1,-0.2 -2,-0.2 0.913 108.3 55.3 -61.8 -44.3 3.6 6.0 -7.7 29 29 A E T <5S- 0 0 163 -4,-1.5 -1,-0.2 -5,-0.3 -2,-0.1 0.811 117.8-114.6 -59.1 -30.5 4.3 3.6 -10.5 30 30 A G T 5S+ 0 0 61 -3,-0.3 -3,-0.2 -4,-0.3 -2,-0.1 0.730 75.9 129.5 99.9 28.5 0.6 3.1 -10.9 31 31 A K S > - 0 0 63 -2,-0.3 4,-1.6 -3,-0.1 3,-0.7 -0.651 24.6-114.7-102.7 160.7 -5.1 2.6 -6.7 34 34 A L H 3> S+ 0 0 44 1,-0.3 4,-2.2 -2,-0.2 5,-0.3 0.872 116.3 60.2 -59.4 -38.1 -6.1 4.2 -3.4 35 35 A I H 3> S+ 0 0 124 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.831 105.3 49.1 -59.4 -33.1 -9.6 2.7 -3.7 36 36 A E H <> S+ 0 0 77 -3,-0.7 4,-1.5 2,-0.2 -1,-0.2 0.862 107.6 53.8 -74.7 -37.5 -8.0 -0.7 -3.6 37 37 A L H X S+ 0 0 2 -4,-1.6 4,-1.7 1,-0.2 -2,-0.2 0.920 112.2 43.4 -63.1 -45.3 -5.8 0.0 -0.6 38 38 A I H X S+ 0 0 20 -4,-2.2 4,-1.6 1,-0.2 -1,-0.2 0.843 109.0 58.6 -69.3 -34.3 -8.8 1.1 1.5 39 39 A K H X S+ 0 0 147 -4,-1.4 4,-1.1 -5,-0.3 -1,-0.2 0.827 105.9 50.3 -64.4 -32.0 -10.9 -1.9 0.2 40 40 A F H X S+ 0 0 34 -4,-1.5 4,-1.2 2,-0.2 3,-0.5 0.948 108.9 48.4 -71.3 -50.8 -8.3 -4.2 1.6 41 41 A A H X>S+ 0 0 1 -4,-1.7 5,-1.3 1,-0.2 4,-1.2 0.808 103.8 64.9 -59.6 -30.1 -8.1 -2.7 5.1 42 42 A K H ><5S+ 0 0 124 -4,-1.6 3,-0.6 1,-0.2 -1,-0.2 0.928 99.6 49.5 -59.1 -47.5 -11.9 -2.8 5.1 43 43 A S H 3<5S+ 0 0 112 -4,-1.1 -1,-0.2 -3,-0.5 -2,-0.2 0.841 113.4 47.4 -61.1 -33.8 -12.0 -6.6 5.0 44 44 A R H 3<5S- 0 0 145 -4,-1.2 -1,-0.3 2,-0.1 -2,-0.2 0.658 107.3-132.1 -81.1 -17.5 -9.5 -6.6 7.9 45 45 A E T <<5 + 0 0 178 -4,-1.2 2,-0.3 -3,-0.6 -3,-0.2 0.982 61.8 119.3 63.4 59.6 -11.6 -4.1 9.8 46 46 A T < - 0 0 42 -5,-1.3 -1,-0.2 1,-0.0 -2,-0.1 -0.993 57.9-150.6-152.5 153.5 -8.7 -1.7 10.7 47 47 A F S S+ 0 0 121 -2,-0.3 -33,-1.5 -3,-0.1 2,-0.4 -0.081 74.7 87.6-115.5 31.7 -7.6 1.9 10.1 48 48 A I E -a 14 0A 77 -35,-0.2 2,-1.0 -7,-0.1 -33,-0.2 -0.940 57.9-159.5-136.8 113.2 -3.9 1.3 10.3 49 49 A I E +a 15 0A 1 -35,-2.1 -33,-1.5 -2,-0.4 -30,-0.2 -0.761 27.9 165.4 -94.5 95.9 -1.8 0.3 7.3 50 50 A D >> - 0 0 68 -2,-1.0 4,-2.5 -35,-0.2 3,-0.7 -0.446 55.8 -89.9-102.0 177.4 1.4 -1.2 8.6 51 51 A D H 3> S+ 0 0 68 1,-0.3 4,-2.2 2,-0.2 5,-0.2 0.842 126.6 59.4 -55.3 -34.9 4.1 -3.3 6.9 52 52 A E H 3> S+ 0 0 140 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.889 109.3 42.3 -61.9 -40.3 2.1 -6.4 7.8 53 53 A I H <> S+ 0 0 15 -3,-0.7 4,-2.6 2,-0.2 -2,-0.2 0.895 111.4 54.4 -73.4 -42.0 -0.9 -5.1 5.8 54 54 A A H X S+ 0 0 3 -4,-2.5 4,-2.1 1,-0.2 5,-0.2 0.876 110.3 47.8 -59.5 -39.0 1.2 -3.9 2.9 55 55 A N H X S+ 0 0 110 -4,-2.2 4,-1.6 -5,-0.2 -1,-0.2 0.937 114.3 44.3 -68.2 -48.3 2.8 -7.4 2.6 56 56 A E H X S+ 0 0 105 -4,-1.7 4,-1.7 -5,-0.2 -2,-0.2 0.824 112.1 56.5 -65.8 -31.7 -0.5 -9.2 2.7 57 57 A F H >X S+ 0 0 3 -4,-2.6 4,-2.9 2,-0.2 3,-0.7 0.990 109.4 40.7 -63.4 -62.9 -2.0 -6.7 0.3 58 58 A L H 3X>S+ 0 0 26 -4,-2.1 5,-3.1 1,-0.3 4,-1.1 0.813 117.2 52.4 -56.1 -31.0 0.5 -7.1 -2.5 59 59 A K H 3<5S+ 0 0 112 -4,-1.6 -1,-0.3 -5,-0.2 -2,-0.2 0.799 112.5 44.7 -75.7 -30.0 0.3 -10.8 -1.9 60 60 A S H <<5S+ 0 0 74 -4,-1.7 -2,-0.2 -3,-0.7 -3,-0.2 0.940 114.2 45.4 -78.5 -52.1 -3.5 -10.8 -2.1 61 61 A I H <5S- 0 0 69 -4,-2.9 -2,-0.2 -5,-0.1 -3,-0.2 0.791 115.9-115.2 -62.4 -28.0 -3.8 -8.7 -5.2 62 62 A G T <5 + 0 0 46 -4,-1.1 2,-0.3 -5,-0.4 3,-0.2 0.884 64.4 139.4 92.7 47.9 -1.1 -10.7 -6.8 63 63 A A < + 0 0 6 -5,-3.1 -1,-0.2 1,-0.2 3,-0.2 -0.795 49.5 32.1-120.8 163.6 1.7 -8.2 -7.3 64 64 A E - 0 0 82 -2,-0.3 2,-2.4 1,-0.2 -1,-0.2 0.878 69.1-171.9 60.0 39.1 5.5 -8.2 -6.9 65 65 A V + 0 0 99 -3,-0.2 2,-0.3 1,-0.1 -1,-0.2 -0.396 33.9 131.1 -65.4 79.8 5.5 -11.8 -7.9 66 66 A E + 0 0 168 -2,-2.4 -1,-0.1 -3,-0.2 4,-0.1 -0.781 21.7 152.4-139.4 92.6 9.2 -12.4 -7.1 67 67 A L - 0 0 88 -2,-0.3 -2,-0.0 1,-0.1 -3,-0.0 -0.913 45.8-134.8-122.6 149.4 10.1 -15.4 -5.0 68 68 A P S S+ 0 0 143 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.790 107.4 16.8 -69.9 -28.5 13.3 -17.5 -4.8 69 69 A Q S S- 0 0 153 -3,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.805 79.3-174.5-106.9 -63.6 11.3 -20.7 -4.9 70 70 A E + 0 0 100 2,-0.1 -5,-0.0 -4,-0.1 -3,-0.0 0.951 17.7 154.9 60.1 93.9 7.8 -20.0 -6.1 71 71 A I 0 0 128 1,-0.1 -4,-0.0 0, 0.0 0, 0.0 0.763 360.0 360.0-111.0 -67.0 5.7 -23.2 -5.8 72 72 A K 0 0 271 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.863 360.0 360.0-162.5 360.0 2.0 -22.4 -5.5