==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-SEP-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 18-MAY-10 2KY8 . COMPND 2 MOLECULE: METHYL-CPG-BINDING DOMAIN PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; . AUTHOR D.C.WILLIAMS JR.,J.N.SCARSDALE JR. . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5487.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 24.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A D 0 0 200 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -49.0 -8.5 -4.4 6.7 2 4 A K + 0 0 184 2,-0.1 2,-0.3 3,-0.0 0, 0.0 -0.863 360.0 85.7-103.1 115.4 -4.8 -4.1 7.1 3 5 A Q + 0 0 153 -2,-0.7 2,-2.1 3,-0.0 3,-0.1 -0.956 42.3 76.4-177.9-166.1 -3.6 -0.9 8.8 4 6 A G S S+ 0 0 48 -2,-0.3 15,-0.6 1,-0.1 2,-0.2 0.059 87.2 92.8 69.0 -36.7 -3.0 0.7 12.3 5 7 A R E -A 18 0A 118 -2,-2.1 2,-0.3 13,-0.2 13,-0.2 -0.597 58.3-173.2 -87.6 150.6 0.2 -1.4 12.3 6 8 A T E -A 17 0A 64 11,-1.4 11,-1.9 -2,-0.2 2,-0.1 -0.985 24.8-110.2-142.0 152.7 3.5 0.1 11.1 7 9 A D E -A 16 0A 119 -2,-0.3 9,-0.2 9,-0.2 8,-0.1 -0.407 37.4-108.2 -78.2 159.3 7.0 -1.2 10.5 8 10 A C - 0 0 8 7,-1.4 6,-0.2 4,-0.2 7,-0.2 -0.791 23.6-164.2 -92.6 123.0 9.9 -0.1 12.7 9 11 A P S S+ 0 0 91 0, 0.0 -1,-0.1 0, 0.0 59,-0.1 0.811 89.6 23.0 -75.4 -31.5 12.3 2.3 10.9 10 12 A A S S+ 0 0 38 57,-0.1 -2,-0.1 2,-0.1 58,-0.0 0.801 110.5 75.7-105.0 -41.2 15.1 2.0 13.5 11 13 A L S S- 0 0 5 1,-0.2 3,-0.2 4,-0.1 4,-0.1 -0.362 106.8 -64.4 -71.8 154.6 14.4 -1.4 15.1 12 14 A P > - 0 0 60 0, 0.0 3,-1.8 0, 0.0 -4,-0.2 0.029 69.6 -88.4 -38.3 135.6 15.3 -4.6 13.1 13 15 A P T 3 S+ 0 0 130 0, 0.0 3,-0.1 0, 0.0 -6,-0.0 -0.181 114.0 38.9 -49.6 131.8 13.1 -4.9 10.0 14 16 A G T 3 S+ 0 0 48 1,-0.4 -3,-0.0 -6,-0.2 0, 0.0 -0.058 77.2 128.9 114.8 -33.2 9.8 -6.8 10.7 15 17 A W < - 0 0 8 -3,-1.8 -7,-1.4 -7,-0.2 -1,-0.4 -0.301 42.5-161.5 -55.5 133.4 9.1 -5.2 14.1 16 18 A K E -AB 7 36A 94 20,-1.5 20,-2.8 -9,-0.2 2,-0.4 -0.924 10.0-172.5-121.7 146.7 5.5 -3.9 14.0 17 19 A K E -AB 6 35A 19 -11,-1.9 -11,-1.4 -2,-0.4 2,-0.3 -0.993 3.0-164.7-138.1 144.9 3.9 -1.3 16.3 18 20 A E E -AB 5 34A 64 16,-2.2 16,-2.2 -2,-0.4 2,-0.5 -0.910 9.5-148.2-127.4 156.1 0.3 -0.1 16.7 19 21 A E E - B 0 33A 115 -15,-0.6 2,-0.5 -2,-0.3 14,-0.2 -0.936 13.6-173.2-127.8 113.0 -1.2 2.9 18.5 20 22 A V E - B 0 32A 48 12,-1.9 12,-2.2 -2,-0.5 2,-0.5 -0.882 11.4-150.7-107.5 131.5 -4.7 2.7 20.0 21 23 A I E - B 0 31A 95 -2,-0.5 2,-0.5 10,-0.2 10,-0.2 -0.854 29.3-109.4-102.1 129.0 -6.4 5.8 21.4 22 24 A R + 0 0 131 8,-2.9 7,-0.6 -2,-0.5 8,-0.2 -0.333 40.8 174.4 -55.7 106.9 -8.9 5.3 24.3 23 25 A K + 0 0 186 -2,-0.5 2,-0.5 5,-0.1 -1,-0.2 0.602 56.6 80.4 -92.7 -11.0 -12.2 6.0 22.5 24 26 A S S S+ 0 0 106 -3,-0.1 3,-0.0 3,-0.1 2,-0.0 -0.817 82.7 32.5 -99.0 130.4 -14.3 5.0 25.6 25 27 A G S > S- 0 0 46 -2,-0.5 3,-0.6 1,-0.1 0, 0.0 0.048 84.0-101.3 106.2 143.2 -14.7 7.6 28.4 26 28 A L T 3 S+ 0 0 178 1,-0.3 2,-1.2 2,-0.1 -1,-0.1 0.857 112.2 79.0 -67.7 -31.4 -14.9 11.4 28.3 27 29 A S T > S+ 0 0 105 2,-0.1 3,-0.7 -3,-0.0 -1,-0.3 0.233 72.4 164.0 -62.9 25.9 -11.2 11.6 29.4 28 30 A A T < + 0 0 66 -2,-1.2 -5,-0.1 -3,-0.6 3,-0.1 -0.060 41.3 72.2 -45.0 147.2 -10.5 10.8 25.7 29 31 A G T 3 + 0 0 59 -7,-0.6 2,-0.4 1,-0.4 -1,-0.2 0.086 62.2 116.2 128.1 -22.9 -6.9 11.5 24.9 30 32 A K < + 0 0 119 -3,-0.7 -8,-2.9 -8,-0.2 -1,-0.4 -0.638 42.0 177.1 -78.7 128.6 -5.1 8.7 26.7 31 33 A S E -B 21 0A 40 -2,-0.4 2,-0.4 -10,-0.2 -10,-0.2 -0.936 17.0-153.8-132.5 154.2 -3.4 6.4 24.2 32 34 A D E -B 20 0A 58 -12,-2.2 -12,-1.9 -2,-0.3 2,-0.5 -0.958 9.5-141.5-128.3 148.1 -1.2 3.2 24.5 33 35 A V E -B 19 0A 15 -2,-0.4 12,-1.8 -14,-0.2 2,-0.3 -0.908 15.5-166.1-111.2 131.8 1.5 1.9 22.1 34 36 A Y E -BC 18 44A 53 -16,-2.2 -16,-2.2 -2,-0.5 2,-0.4 -0.877 2.8-157.8-115.2 148.5 1.9 -1.9 21.6 35 37 A Y E -BC 17 43A 0 8,-1.2 8,-1.9 -2,-0.3 2,-0.5 -0.972 2.2-155.5-126.5 139.6 4.8 -3.7 19.9 36 38 A F E -BC 16 42A 56 -20,-2.8 -20,-1.5 -2,-0.4 6,-0.2 -0.934 11.4-142.2-115.6 133.2 4.8 -7.1 18.2 37 39 A S > - 0 0 7 4,-1.9 3,-1.0 -2,-0.5 -23,-0.0 -0.461 29.7-106.5 -86.2 164.2 8.0 -9.2 17.9 38 40 A P T 3 S+ 0 0 100 0, 0.0 -1,-0.1 0, 0.0 -24,-0.0 0.769 119.9 61.5 -59.2 -26.4 8.8 -11.4 14.8 39 41 A S T 3 S- 0 0 89 2,-0.1 -3,-0.0 1,-0.0 0, 0.0 0.825 119.7-109.5 -72.9 -28.2 8.0 -14.5 16.9 40 42 A G < + 0 0 58 -3,-1.0 2,-0.2 1,-0.3 -1,-0.0 0.408 68.9 144.2 114.6 0.8 4.4 -13.2 17.3 41 43 A K - 0 0 127 1,-0.1 -4,-1.9 -5,-0.0 2,-0.4 -0.484 44.9-133.1 -72.6 140.6 4.6 -12.4 21.0 42 44 A K E -C 36 0A 93 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.754 25.5-176.5 -96.7 140.1 2.6 -9.3 22.0 43 45 A F E -C 35 0A 13 -8,-1.9 -8,-1.2 -2,-0.4 2,-0.4 -0.873 12.9-151.9-129.7 165.6 4.1 -6.5 24.2 44 46 A R E +C 34 0A 166 -2,-0.3 4,-0.3 -10,-0.2 -10,-0.2 -0.950 58.9 5.8-142.4 120.5 2.9 -3.3 25.8 45 47 A S S >> S- 0 0 53 -12,-1.8 4,-1.7 -2,-0.4 3,-0.7 0.072 85.8 -85.6 92.8 154.1 4.9 -0.2 26.6 46 48 A K H 3> S+ 0 0 48 1,-0.2 4,-3.9 2,-0.2 5,-0.3 0.936 125.0 63.2 -63.1 -43.6 8.6 0.6 25.9 47 49 A P H 3> S+ 0 0 58 0, 0.0 4,-1.3 0, 0.0 -1,-0.2 0.806 104.8 47.8 -50.4 -32.1 9.7 -1.3 29.1 48 50 A Q H <> S+ 0 0 80 -3,-0.7 4,-1.5 -4,-0.3 -2,-0.2 0.933 116.0 41.2 -78.6 -46.9 8.3 -4.5 27.6 49 51 A L H X S+ 0 0 1 -4,-1.7 4,-2.4 2,-0.2 5,-0.3 0.932 113.2 55.1 -65.8 -43.0 9.9 -4.1 24.2 50 52 A A H X S+ 0 0 33 -4,-3.9 4,-2.0 1,-0.2 -1,-0.2 0.941 106.7 50.5 -56.9 -45.8 13.2 -2.9 25.7 51 53 A R H < S+ 0 0 181 -4,-1.3 -1,-0.2 -5,-0.3 -2,-0.2 0.889 108.5 53.8 -61.0 -35.8 13.3 -6.0 27.9 52 54 A Y H < S+ 0 0 104 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.951 110.0 45.2 -65.1 -46.2 12.8 -8.2 24.8 53 55 A L H >< S- 0 0 22 -4,-2.4 3,-1.1 1,-0.2 -1,-0.2 0.829 91.7-176.0 -67.5 -28.0 15.7 -6.6 23.0 54 56 A G T 3< - 0 0 48 -4,-2.0 3,-0.4 -5,-0.3 -1,-0.2 -0.458 62.6 -27.4 68.3-133.5 17.8 -6.9 26.1 55 57 A N T 3 S+ 0 0 158 -2,-0.2 -1,-0.2 1,-0.2 3,-0.1 -0.085 115.3 95.4-106.9 35.7 21.2 -5.3 25.7 56 58 A A S < S+ 0 0 78 -3,-1.1 2,-0.3 1,-0.3 -1,-0.2 0.695 93.5 16.6 -96.6 -21.4 21.4 -5.8 21.9 57 59 A V S S- 0 0 57 -3,-0.4 2,-0.6 -7,-0.2 -1,-0.3 -0.996 71.6-127.3-148.4 152.6 20.1 -2.3 21.0 58 60 A D - 0 0 128 -2,-0.3 3,-0.3 1,-0.1 -3,-0.1 -0.885 16.8-177.7-105.7 120.5 19.7 1.0 22.8 59 61 A L > + 0 0 12 -2,-0.6 3,-1.3 1,-0.2 5,-0.2 0.198 54.2 109.9 -99.0 17.8 16.2 2.6 22.6 60 62 A S T 3 S+ 0 0 105 1,-0.3 -1,-0.2 3,-0.1 -2,-0.0 0.935 88.2 36.6 -58.8 -43.6 17.3 5.7 24.6 61 63 A C T 3 S+ 0 0 103 -3,-0.3 2,-0.7 2,-0.0 -1,-0.3 0.356 102.4 95.4 -89.2 8.3 17.0 7.8 21.4 62 64 A F < - 0 0 5 -3,-1.3 2,-1.0 7,-0.2 7,-0.2 -0.862 62.8-157.6-102.9 115.6 14.0 5.8 20.4 63 65 A D B >> -D 68 0B 71 5,-2.6 4,-3.7 -2,-0.7 5,-1.5 -0.764 9.3-175.7 -93.7 103.4 10.6 7.4 21.4 64 66 A F T 45S+ 0 0 53 -2,-1.0 -1,-0.2 2,-0.2 -30,-0.1 0.938 77.3 72.8 -64.4 -43.6 8.0 4.6 21.6 65 67 A R T 45S+ 0 0 149 1,-0.3 -1,-0.2 2,-0.1 -2,-0.1 0.887 124.5 10.2 -36.6 -48.3 5.2 7.1 22.3 66 68 A T T 45S- 0 0 83 -3,-0.5 -1,-0.3 2,-0.1 -2,-0.2 0.682 103.0-124.6-106.3 -24.9 5.6 8.2 18.6 67 69 A G T <5 + 0 0 0 -4,-3.7 2,-0.3 1,-0.2 -3,-0.2 0.892 64.1 130.4 83.2 40.9 7.9 5.4 17.4 68 70 A K B < D 63 0B 132 -5,-1.5 -5,-2.6 -60,-0.1 -1,-0.2 -0.814 360.0 360.0-122.8 165.5 10.6 7.7 16.0 69 71 A M 0 0 145 -2,-0.3 -7,-0.2 -7,-0.2 -10,-0.0 -0.918 360.0 360.0-114.7 360.0 14.4 7.7 16.5