==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 08-FEB-02 1KZT . COMPND 2 MOLECULE: VPR PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.ENGLER,T.STANGLER,D.WILLBOLD . 18 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2116.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 83.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 27.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 55.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 34 A F > 0 0 206 0, 0.0 3,-2.5 0, 0.0 5,-0.3 0.000 360.0 360.0 360.0 125.0 11.7 -1.2 7.7 2 35 A P T 3 + 0 0 80 0, 0.0 5,-0.3 0, 0.0 6,-0.2 0.736 360.0 86.8 -53.5 -19.1 8.5 -0.4 5.9 3 36 A R T 3 S+ 0 0 190 3,-0.2 4,-0.2 4,-0.1 5,-0.2 0.847 77.2 77.6 -52.1 -31.5 7.2 0.6 9.3 4 37 A I S X> S- 0 0 82 -3,-2.5 3,-3.0 1,-0.1 4,-0.6 0.333 125.2 -50.2 -59.7-156.1 8.7 4.1 8.7 5 38 A W H 3> S+ 0 0 158 1,-0.3 4,-1.0 2,-0.2 3,-0.2 0.754 134.0 75.0 -55.4 -18.6 6.8 6.5 6.4 6 39 A L H 3> S+ 0 0 78 -5,-0.3 4,-0.7 1,-0.2 -1,-0.3 0.716 88.4 60.4 -68.0 -15.2 6.6 3.6 3.9 7 40 A H H X> S+ 0 0 106 -3,-3.0 4,-0.7 -5,-0.3 3,-0.6 0.898 99.6 51.8 -79.0 -40.1 3.9 2.1 6.2 8 41 A N H 3X S+ 0 0 69 -4,-0.6 4,-0.7 -3,-0.2 3,-0.3 0.781 101.2 64.4 -67.7 -22.9 1.5 5.1 5.8 9 42 A L H >X S+ 0 0 87 -4,-1.0 3,-0.9 1,-0.2 4,-0.9 0.862 92.0 62.0 -69.5 -32.3 1.8 4.8 2.0 10 43 A G H < S+ 0 0 139 -4,-1.3 3,-0.8 -3,-0.4 -1,-0.3 0.897 105.5 57.0 -62.6 -37.0 -8.6 3.9 -0.7 16 49 A T H 3< S+ 0 0 88 -4,-1.6 -1,-0.2 -3,-0.3 -2,-0.2 0.897 120.7 28.7 -62.5 -37.0 -7.9 2.9 -4.3 17 50 A Y T 3< 0 0 188 -4,-1.9 -1,-0.3 -3,-0.2 -2,-0.2 0.241 360.0 360.0-106.6 13.6 -9.7 -0.4 -3.8 18 51 A G < 0 0 89 -3,-0.8 -3,-0.1 -4,-0.4 -4,-0.0 0.327 360.0 360.0-102.1 360.0 -12.0 0.9 -1.1