==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 08-FEB-02 1KZV . COMPND 2 MOLECULE: VPR PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.ENGLER,T.STANGLER,D.WILLBOLD . 18 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2207.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 21116.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 55.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 61.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 34 A F > 0 0 203 0, 0.0 3,-2.3 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0 142.0 1.7 15.4 1.5 2 35 A P T > + 0 0 89 0, 0.0 3,-1.9 0, 0.0 4,-0.4 0.700 360.0 81.1 -59.0 -15.3 2.7 13.8 -1.8 3 36 A R T >> + 0 0 132 1,-0.3 3,-1.7 2,-0.2 4,-1.6 0.819 68.5 81.1 -62.4 -26.2 2.8 10.6 0.2 4 37 A I H <> S+ 0 0 110 -3,-2.3 4,-0.9 1,-0.3 -1,-0.3 0.797 85.2 62.9 -51.2 -22.4 -1.0 10.4 -0.1 5 38 A W H <> S+ 0 0 196 -3,-1.9 4,-0.6 -4,-0.2 3,-0.3 0.883 99.9 49.9 -72.1 -35.8 -0.1 8.9 -3.5 6 39 A L H X> S+ 0 0 86 -3,-1.7 3,-1.1 -4,-0.4 4,-0.7 0.866 101.6 62.9 -71.2 -32.9 1.7 5.9 -1.9 7 40 A H H >X S+ 0 0 119 -4,-1.6 3,-1.1 1,-0.3 4,-0.6 0.858 91.8 66.2 -60.8 -31.3 -1.3 5.2 0.3 8 41 A N H >< S+ 0 0 113 -4,-0.9 3,-1.2 -3,-0.3 4,-0.5 0.862 90.8 63.8 -59.8 -31.8 -3.4 4.6 -2.8 9 42 A L H XX S+ 0 0 111 -3,-1.1 3,-2.2 -4,-0.6 4,-0.9 0.857 85.2 73.7 -62.0 -31.5 -1.2 1.5 -3.4 10 43 A G H XX S+ 0 0 39 -3,-1.1 3,-0.7 -4,-0.7 4,-0.6 0.877 87.6 62.7 -51.0 -35.0 -2.6 -0.0 -0.2 11 44 A Q H XX S+ 0 0 129 -3,-1.2 3,-1.0 -4,-0.6 4,-0.6 0.824 91.7 66.1 -62.1 -27.1 -5.8 -0.6 -2.1 12 45 A H H X> S+ 0 0 123 -3,-2.2 3,-1.5 -4,-0.5 4,-0.6 0.915 93.6 57.5 -62.2 -39.6 -3.9 -2.9 -4.4 13 46 A I H