==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=15-MAR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 16-JUN-10 2KZF . COMPND 2 MOLECULE: RIBOSOME-BINDING FACTOR A; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR P.SERRANO,K.JAUDZEMS,R.HORST,I.A.WILSON,K.WUTHRICH,JOINT CEN . 106 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8550.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 78 73.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 5.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 5.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 34.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 139 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-131.0 -17.9 9.7 17.2 2 2 A M + 0 0 183 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.176 360.0 70.5-124.0 8.0 -18.9 12.9 15.3 3 3 A N S S- 0 0 138 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.844 79.5 -89.0-137.9 160.6 -18.0 12.2 11.7 4 4 A P - 0 0 104 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.069 25.3-177.2 -69.8 173.5 -19.1 10.0 8.6 5 5 A A >> + 0 0 70 4,-0.0 3,-1.4 3,-0.0 4,-0.6 0.534 4.0 177.8-135.6 -63.1 -18.0 6.5 7.7 6 6 A Y T 34 S- 0 0 197 1,-0.2 0, 0.0 2,-0.1 0, 0.0 0.639 71.8 -81.0 53.2 24.1 -19.5 5.2 4.4 7 7 A R T 34 S+ 0 0 219 1,-0.1 -1,-0.2 4,-0.0 -2,-0.0 0.844 111.3 102.6 57.5 34.6 -17.6 1.9 4.6 8 8 A K T X> S+ 0 0 95 -3,-1.4 4,-1.9 3,-0.1 3,-0.9 0.758 76.5 33.7-107.9 -76.1 -14.4 3.6 3.2 9 9 A A H 3X S+ 0 0 65 -4,-0.6 4,-2.5 1,-0.3 5,-0.2 0.807 116.4 57.7 -57.2 -35.4 -11.8 4.4 5.9 10 10 A M H 3> S+ 0 0 148 2,-0.2 4,-1.2 1,-0.2 -1,-0.3 0.894 108.8 45.8 -58.3 -44.0 -12.7 1.2 7.9 11 11 A L H <> S+ 0 0 38 -3,-0.9 4,-1.8 2,-0.2 -2,-0.2 0.873 111.2 51.7 -68.8 -41.4 -11.9 -1.0 4.9 12 12 A E H X S+ 0 0 12 -4,-1.9 4,-2.2 1,-0.2 -2,-0.2 0.902 107.4 53.2 -64.5 -38.4 -8.7 0.9 4.2 13 13 A S H X S+ 0 0 79 -4,-2.5 4,-1.2 2,-0.2 -1,-0.2 0.812 107.0 53.0 -65.3 -30.7 -7.7 0.3 7.9 14 14 A E H X S+ 0 0 128 -4,-1.2 4,-1.1 1,-0.2 -1,-0.2 0.902 112.6 43.6 -66.9 -43.1 -8.3 -3.4 7.3 15 15 A I H X S+ 0 0 5 -4,-1.8 4,-2.1 1,-0.2 -2,-0.2 0.821 104.0 68.5 -70.0 -32.3 -6.0 -3.4 4.3 16 16 A Q H X S+ 0 0 54 -4,-2.2 4,-1.1 1,-0.2 -2,-0.2 0.926 104.0 39.7 -55.3 -53.2 -3.4 -1.2 6.2 17 17 A K H X S+ 0 0 120 -4,-1.2 4,-2.6 1,-0.2 -1,-0.2 0.862 110.3 60.4 -66.2 -40.1 -2.5 -4.1 8.7 18 18 A L H X S+ 0 0 32 -4,-1.1 4,-2.4 1,-0.2 -1,-0.2 0.909 105.2 47.7 -52.1 -50.3 -2.6 -6.7 5.9 19 19 A L H X S+ 0 0 1 -4,-2.1 4,-2.4 2,-0.2 -1,-0.2 0.813 111.1 52.4 -64.4 -32.1 0.2 -4.9 4.0 20 20 A M H X S+ 0 0 39 -4,-1.1 4,-2.6 2,-0.2 -2,-0.2 0.937 109.2 47.4 -71.7 -46.4 2.3 -4.6 7.2 21 21 A E H X S+ 0 0 98 -4,-2.6 4,-1.1 2,-0.2 -2,-0.2 0.940 113.3 50.3 -56.1 -46.3 2.1 -8.3 8.0 22 22 A A H >< S+ 0 0 4 -4,-2.4 3,-1.0 -5,-0.2 4,-0.4 0.940 109.2 51.3 -56.2 -48.6 3.0 -8.9 4.3 23 23 A L H >X S+ 0 0 3 -4,-2.4 3,-1.6 1,-0.3 4,-0.7 0.920 106.7 52.8 -55.4 -47.7 6.0 -6.5 4.7 24 24 A Q H 3< S+ 0 0 137 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.750 117.2 40.0 -59.7 -22.8 7.2 -8.3 7.9 25 25 A Q T << S+ 0 0 144 -4,-1.1 -1,-0.3 -3,-1.0 -2,-0.2 0.296 94.9 85.0-105.4 1.8 7.1 -11.5 5.7 26 26 A L T <4 - 0 0 22 -3,-1.6 2,-2.3 -4,-0.4 -2,-0.2 0.893 59.7-175.4 -74.4 -38.9 8.5 -9.9 2.5 27 27 A R < - 0 0 198 -4,-0.7 4,-0.4 4,-0.1 -1,-0.2 -0.373 24.1-169.8 66.9 -51.4 12.2 -10.3 3.5 28 28 A D - 0 0 18 -2,-2.3 3,-0.1 2,-0.1 41,-0.0 0.248 36.6 -90.4 63.8 166.7 13.2 -8.4 0.3 29 29 A P S S- 0 0 98 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 0.940 108.4 -19.5 -69.0 -55.6 16.7 -7.9 -1.3 30 30 A R S S+ 0 0 219 36,-0.0 2,-0.4 2,-0.0 -2,-0.1 -0.627 82.2 139.9-162.8 83.6 17.3 -4.7 0.7 31 31 A L - 0 0 18 -4,-0.4 2,-1.5 -2,-0.1 3,-0.1 -0.968 45.1-141.9-124.1 112.3 14.4 -2.9 2.2 32 32 A K > - 0 0 122 -2,-0.4 3,-1.9 1,-0.2 -4,-0.0 -0.609 21.9-177.2 -70.2 86.5 15.2 -1.6 5.7 33 33 A K G > S+ 0 0 52 -2,-1.5 3,-0.9 1,-0.3 -1,-0.2 0.677 75.9 68.9 -66.4 -17.8 11.7 -2.3 7.1 34 34 A D G 3 S+ 0 0 136 1,-0.3 -1,-0.3 -3,-0.1 -2,-0.1 0.592 100.4 50.3 -73.3 -12.6 12.7 -0.8 10.4 35 35 A F G < S+ 0 0 92 -3,-1.9 22,-3.1 2,-0.0 2,-0.3 -0.286 107.8 54.4-122.3 39.3 12.8 2.6 8.6 36 36 A V < - 0 0 21 -3,-0.9 2,-0.3 20,-0.3 20,-0.2 -0.975 50.1-174.9-154.5 165.8 9.3 2.6 6.9 37 37 A T - 0 0 53 -2,-0.3 18,-2.3 18,-0.2 2,-0.5 -0.938 26.9-130.5-149.7 172.7 5.6 2.3 7.4 38 38 A F E +A 54 0A 0 -2,-0.3 16,-0.2 16,-0.2 3,-0.1 -0.992 43.5 153.0-116.1 107.7 2.5 2.1 5.3 39 39 A S E + 0 0 88 14,-1.4 2,-0.4 -2,-0.5 -1,-0.1 0.825 52.4 47.9-104.9 -66.4 0.2 4.7 7.0 40 40 A R E + 0 0 126 13,-0.4 13,-2.9 2,-0.0 2,-0.3 -0.674 58.3 173.0 -86.9 134.6 -2.3 6.1 4.5 41 41 A V E +A 52 0A 7 -2,-0.4 2,-0.4 11,-0.2 11,-0.2 -0.990 3.4 179.8-133.9 133.9 -4.2 3.7 2.2 42 42 A E E -A 51 0A 58 9,-2.5 9,-3.0 -2,-0.3 2,-0.2 -0.958 13.0-151.4-140.4 118.9 -7.0 5.0 -0.1 43 43 A L E -A 50 0A 12 -2,-0.4 7,-0.3 7,-0.3 5,-0.1 -0.566 25.7-103.6 -89.5 156.8 -9.1 2.8 -2.5 44 44 A S > - 0 0 56 5,-2.6 3,-1.4 -2,-0.2 -1,-0.1 0.060 38.2 -86.3 -70.6 178.7 -10.7 4.0 -5.7 45 45 A K T 3 S+ 0 0 203 1,-0.3 -2,-0.1 2,-0.1 -1,-0.0 0.945 133.2 23.2 -50.2 -64.2 -14.3 4.9 -6.7 46 46 A D T 3 S- 0 0 103 1,-0.0 -1,-0.3 0, 0.0 -2,-0.1 0.021 115.1-112.3 -91.8 21.7 -15.2 1.3 -7.6 47 47 A K S < S+ 0 0 103 -3,-1.4 -2,-0.1 1,-0.1 -5,-0.0 0.644 82.7 129.2 52.5 19.2 -12.4 0.0 -5.3 48 48 A R + 0 0 133 43,-0.1 44,-1.6 -5,-0.1 2,-0.3 0.665 68.4 42.4 -75.9 -14.3 -10.5 -1.2 -8.5 49 49 A Y E - b 0 92A 94 42,-0.3 -5,-2.6 44,-0.0 2,-0.4 -0.900 68.0-157.4-129.8 155.3 -7.3 0.6 -7.4 50 50 A A E -Ab 43 93A 0 42,-2.4 44,-2.5 -2,-0.3 2,-0.5 -0.961 8.5-153.3-139.4 110.7 -5.7 0.9 -4.0 51 51 A D E -Ab 42 94A 49 -9,-3.0 -9,-2.5 -2,-0.4 2,-0.5 -0.815 12.3-166.8 -92.9 120.1 -3.3 3.8 -3.3 52 52 A V E -Ab 41 95A 0 42,-2.8 44,-2.5 -2,-0.5 2,-0.6 -0.961 9.1-150.1-118.4 119.0 -0.7 2.9 -0.6 53 53 A Y E - b 0 96A 33 -13,-2.9 -14,-1.4 -2,-0.5 2,-0.5 -0.809 11.2-160.9 -96.8 114.4 1.4 5.8 0.9 54 54 A V E -A 38 0A 3 42,-3.0 2,-0.8 -2,-0.6 -16,-0.2 -0.861 4.4-161.9-102.7 119.4 4.8 4.6 2.0 55 55 A S - 0 0 51 -18,-2.3 -18,-0.2 -2,-0.5 2,-0.1 -0.747 11.7-165.3-106.2 83.0 6.7 6.8 4.5 56 56 A F - 0 0 17 -2,-0.8 -20,-0.3 -20,-0.2 7,-0.1 -0.412 16.8-143.3 -67.7 149.2 10.4 5.8 4.3 57 57 A L S S+ 0 0 130 -22,-3.1 2,-0.1 -2,-0.1 -21,-0.1 -0.035 74.4 80.4-107.8 24.2 12.7 7.0 7.2 58 58 A G S S- 0 0 38 1,-0.3 0, 0.0 -23,-0.2 0, 0.0 -0.327 96.8 -59.2-105.5-166.5 15.7 7.7 5.0 59 59 A T > - 0 0 84 -2,-0.1 4,-2.7 1,-0.1 -1,-0.3 -0.295 51.4-109.0 -67.5 163.2 16.6 10.6 2.8 60 60 A P H > S+ 0 0 85 0, 0.0 4,-1.8 0, 0.0 5,-0.1 0.815 121.3 57.6 -67.9 -29.5 14.2 11.4 -0.1 61 61 A E H > S+ 0 0 150 2,-0.2 4,-1.0 1,-0.2 3,-0.1 0.935 112.6 39.9 -63.0 -48.2 16.9 10.1 -2.6 62 62 A E H > S+ 0 0 72 1,-0.2 4,-1.5 2,-0.2 3,-0.3 0.896 108.7 62.3 -63.8 -45.3 16.7 6.7 -0.7 63 63 A R H X S+ 0 0 60 -4,-2.7 4,-0.7 1,-0.2 3,-0.3 0.877 100.7 53.2 -53.5 -42.3 12.9 7.0 -0.4 64 64 A K H >X S+ 0 0 113 -4,-1.8 3,-1.4 1,-0.2 4,-0.8 0.900 103.6 56.5 -58.6 -45.9 12.5 6.9 -4.2 65 65 A E H >X S+ 0 0 114 -4,-1.0 4,-1.4 -3,-0.3 3,-0.7 0.859 100.8 59.0 -55.0 -39.6 14.6 3.7 -4.5 66 66 A T H 3X S+ 0 0 9 -4,-1.5 4,-2.5 -3,-0.3 -1,-0.3 0.754 94.5 64.5 -63.6 -27.4 12.3 1.9 -2.1 67 67 A V H < S+ 0 0 222 -4,-2.1 3,-0.7 1,-0.2 4,-0.2 0.942 110.5 50.7 -64.1 -52.5 8.6 -5.3 -7.8 73 73 A A H >X S+ 0 0 11 -4,-2.4 4,-1.9 1,-0.2 3,-0.6 0.502 80.5 107.8 -65.3 -4.4 7.1 -6.8 -4.6 74 74 A K H 3X S+ 0 0 43 -4,-0.5 4,-2.9 1,-0.2 -1,-0.2 0.814 75.3 50.8 -44.6 -48.8 3.5 -5.9 -5.8 75 75 A G H <> S+ 0 0 41 -3,-0.7 4,-2.4 2,-0.2 -1,-0.2 0.906 108.3 51.5 -62.2 -44.2 2.5 -9.5 -6.6 76 76 A F H <> S+ 0 0 81 -3,-0.6 4,-1.2 -4,-0.2 -1,-0.2 0.911 115.8 42.8 -57.2 -46.4 3.6 -10.9 -3.2 77 77 A F H X S+ 0 0 1 -4,-1.9 4,-1.5 -7,-0.2 3,-0.3 0.967 114.8 47.4 -62.8 -55.8 1.5 -8.1 -1.5 78 78 A R H X S+ 0 0 100 -4,-2.9 4,-1.8 1,-0.2 -2,-0.2 0.801 107.3 55.8 -67.3 -32.1 -1.6 -8.4 -3.7 79 79 A T H X S+ 0 0 100 -4,-2.4 4,-0.6 -5,-0.2 -1,-0.2 0.910 103.6 55.3 -66.6 -37.9 -1.9 -12.2 -3.5 80 80 A F H >X S+ 0 0 63 -4,-1.2 3,-1.6 -3,-0.3 4,-1.1 0.929 106.5 50.8 -59.7 -44.3 -1.9 -12.1 0.3 81 81 A I H >X S+ 0 0 5 -4,-1.5 4,-2.5 1,-0.3 3,-0.6 0.919 103.4 59.7 -61.5 -38.5 -4.9 -9.7 0.1 82 82 A A H 3< S+ 0 0 51 -4,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.633 99.5 58.1 -68.1 -9.6 -6.6 -12.1 -2.2 83 83 A K H << S+ 0 0 173 -3,-1.6 -1,-0.2 -4,-0.6 -2,-0.2 0.863 121.3 25.1 -72.9 -43.6 -6.4 -14.7 0.6 84 84 A N H << S+ 0 0 54 -4,-1.1 2,-0.5 -3,-0.6 -2,-0.2 0.935 108.0 73.0 -88.3 -60.9 -8.4 -12.5 2.9 85 85 A L S < S- 0 0 53 -4,-2.5 2,-1.8 -5,-0.1 -1,-0.1 -0.478 76.2-139.2 -65.2 111.6 -10.6 -10.2 0.7 86 86 A R + 0 0 242 -2,-0.5 2,-0.3 -3,-0.0 -1,-0.1 -0.611 62.2 109.5 -71.8 83.6 -13.4 -12.2 -0.8 87 87 A L S S- 0 0 104 -2,-1.8 3,-0.0 1,-0.2 -2,-0.0 -0.924 74.2-116.1-142.0 163.2 -13.4 -10.8 -4.4 88 88 A Y S S+ 0 0 218 -2,-0.3 2,-0.2 1,-0.1 -1,-0.2 0.993 97.8 12.4 -58.5 -74.9 -12.3 -12.4 -7.7 89 89 A V S S- 0 0 90 -3,-0.1 -1,-0.1 1,-0.0 0, 0.0 -0.676 82.3-126.6-101.5 161.3 -9.4 -10.2 -8.5 90 90 A A - 0 0 28 -2,-0.2 3,-0.1 1,-0.1 -42,-0.1 -0.713 32.2 -88.7-106.0 158.1 -7.8 -7.6 -6.2 91 91 A P - 0 0 26 0, 0.0 2,-1.0 0, 0.0 -42,-0.3 -0.133 47.2 -94.4 -61.2 158.1 -7.1 -3.9 -6.7 92 92 A E E -b 49 0A 74 -44,-1.6 -42,-2.4 1,-0.1 2,-1.2 -0.685 38.5-144.0 -72.4 103.5 -4.0 -2.6 -8.3 93 93 A I E -b 50 0A 1 -2,-1.0 2,-0.7 -44,-0.2 -42,-0.2 -0.680 19.8-167.9 -69.1 92.8 -1.9 -1.8 -5.2 94 94 A R E -b 51 0A 57 -44,-2.5 -42,-2.8 -2,-1.2 2,-0.4 -0.859 6.5-152.5 -89.5 112.4 -0.1 1.3 -6.4 95 95 A F E +b 52 0A 6 -2,-0.7 2,-0.3 -44,-0.2 -42,-0.2 -0.733 17.5 177.9 -81.9 139.6 2.7 2.1 -4.0 96 96 A Y E -b 53 0A 63 -44,-2.5 -42,-3.0 -2,-0.4 2,-2.2 -0.974 41.9-109.9-137.3 151.2 3.7 5.8 -3.8 97 97 A E S S- 0 0 41 -2,-0.3 -44,-0.1 -44,-0.2 -42,-0.1 -0.389 79.8 -71.1 -81.9 63.0 6.3 7.5 -1.5 98 98 A D S S+ 0 0 61 -2,-2.2 2,-0.2 -46,-0.2 -1,-0.2 0.958 80.3 158.9 45.7 78.0 3.6 9.2 0.5 99 99 A K + 0 0 106 2,-0.0 2,-1.1 -3,-0.0 -1,-0.1 -0.669 14.9 167.7-134.2 76.3 2.3 11.8 -2.0 100 100 A G + 0 0 56 -2,-0.2 2,-0.3 2,-0.1 -47,-0.0 -0.828 28.1 146.0 -80.7 95.4 -1.2 13.1 -1.3 101 101 A I > - 0 0 122 -2,-1.1 3,-0.7 3,-0.1 2,-0.4 -0.840 45.8-134.8-144.1 98.8 -1.0 16.0 -3.8 102 102 A E T 3 S+ 0 0 198 -2,-0.3 3,-0.1 1,-0.2 -2,-0.1 -0.432 76.5 73.4 -60.6 109.9 -4.2 17.0 -5.7 103 103 A A T 3 S+ 0 0 105 1,-0.5 -1,-0.2 -2,-0.4 2,-0.2 0.001 88.7 33.1-169.3 -41.8 -3.5 17.5 -9.5 104 104 A S < + 0 0 96 -3,-0.7 -1,-0.5 1,-0.1 -3,-0.1 -0.626 31.7 172.4-124.7 172.0 -3.0 14.1 -11.2 105 105 A V 0 0 116 -2,-0.2 -1,-0.1 -3,-0.1 -3,-0.0 0.145 360.0 360.0-139.2 -74.3 -4.0 10.4 -11.3 106 106 A K 0 0 197 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.544 360.0 360.0 56.8 360.0 -2.5 8.7 -14.4