==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 18-JUN-10 2KZK . COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YOL083W; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR Y.WATANABE,N.NODA,H.KUMETA,K.SUZUKI,Y.OHSUMI,F.INAGAKI . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6185.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 40.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 25.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 246 A N 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 95.0 2.1 0.0 -1.2 2 247 A D - 0 0 116 1,-0.1 98,-0.0 22,-0.1 21,-0.0 0.620 360.0-116.3 65.2 132.8 1.9 -3.4 -2.9 3 248 A P S S+ 0 0 64 0, 0.0 21,-0.3 0, 0.0 20,-0.2 0.548 70.9 135.9 -75.0 -7.8 0.8 -6.4 -0.8 4 249 A L - 0 0 36 94,-0.1 2,-0.6 19,-0.1 19,-0.4 -0.091 45.0-152.7 -42.5 134.4 4.3 -7.8 -1.4 5 250 A L - 0 0 12 18,-0.1 94,-0.6 17,-0.1 17,-0.1 -0.916 8.5-139.5-121.2 103.1 5.7 -9.3 1.8 6 251 A H E +AB 21 98A 89 15,-0.8 15,-2.7 -2,-0.6 2,-0.3 -0.360 31.8 171.1 -61.4 134.4 9.5 -9.2 2.0 7 252 A V E -A 20 0A 5 90,-0.5 90,-0.5 13,-0.2 2,-0.3 -0.924 22.0-152.1-142.4 164.9 10.8 -12.4 3.5 8 253 A E E -A 19 0A 82 11,-0.8 11,-1.4 -2,-0.3 2,-0.6 -0.981 6.9-149.4-146.1 129.5 14.1 -14.1 4.1 9 254 A V E +A 18 0A 6 -2,-0.3 9,-0.2 9,-0.2 86,-0.1 -0.887 19.6 169.6-102.8 118.3 15.0 -17.8 4.4 10 255 A S - 0 0 26 7,-1.4 -1,-0.2 -2,-0.6 8,-0.1 0.936 5.9-179.8 -87.8 -65.6 18.0 -18.5 6.6 11 256 A N + 0 0 55 1,-0.2 2,-0.3 57,-0.1 5,-0.3 0.986 48.0 93.8 58.4 63.5 17.9 -22.3 7.1 12 257 A E B > +D 15 0B 128 3,-0.9 3,-1.0 1,-0.1 -1,-0.2 -0.911 31.3 77.9-162.4-175.0 21.0 -22.5 9.3 13 258 A D T 3 S- 0 0 124 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.748 125.4 -63.1 69.7 24.2 22.2 -22.5 12.9 14 259 A N T 3 S+ 0 0 149 1,-0.3 -1,-0.3 -3,-0.1 2,-0.3 0.685 129.2 43.9 72.4 18.6 21.2 -26.2 13.0 15 260 A S B < S-D 12 0B 40 -3,-1.0 -3,-0.9 49,-0.1 -1,-0.3 -0.884 94.9 -70.6-165.3-167.1 17.6 -24.9 12.4 16 261 A L - 0 0 4 47,-1.7 47,-0.2 49,-0.7 2,-0.2 -0.575 30.0-172.4-101.3 166.2 15.5 -22.5 10.5 17 262 A H - 0 0 55 -2,-0.2 -7,-1.4 45,-0.2 2,-0.3 -0.625 6.4-176.3-163.2 95.3 15.2 -18.8 10.7 18 263 A F E -A 9 0A 0 43,-0.2 43,-1.3 -9,-0.2 2,-0.4 -0.695 4.5-168.9 -97.5 149.3 12.6 -16.8 8.8 19 264 A I E -AC 8 60A 32 -11,-1.4 -11,-0.8 -2,-0.3 2,-0.4 -0.924 5.1-177.2-142.2 112.2 12.3 -13.1 8.7 20 265 A L E -AC 7 59A 8 39,-2.8 39,-1.8 -2,-0.4 2,-0.5 -0.869 8.8-159.9-111.5 144.0 9.2 -11.3 7.3 21 266 A Y E -AC 6 58A 52 -15,-2.7 2,-0.8 -2,-0.4 -15,-0.8 -0.952 21.4-129.5-128.6 111.9 8.8 -7.6 7.0 22 267 A N + 0 0 0 35,-0.9 -17,-0.1 -2,-0.5 -18,-0.1 -0.425 43.0 156.2 -60.5 101.3 5.3 -6.0 6.6 23 268 A K + 0 0 69 -2,-0.8 -1,-0.2 -19,-0.4 -18,-0.1 0.602 37.2 109.3-101.6 -19.2 5.9 -3.8 3.6 24 269 A T S S- 0 0 5 -21,-0.3 -22,-0.1 -20,-0.2 4,-0.1 0.162 83.4-106.9 -48.0 175.2 2.2 -3.8 2.7 25 270 A N S S+ 0 0 100 2,-0.1 30,-0.1 0, 0.0 -1,-0.1 0.970 101.3 57.6 -72.8 -57.4 0.2 -0.6 3.1 26 271 A I S S- 0 0 108 1,-0.1 2,-0.5 28,-0.1 28,-0.1 -0.183 90.5-113.6 -69.3 166.8 -1.8 -1.7 6.1 27 272 A I - 0 0 80 1,-0.1 -1,-0.1 26,-0.1 -2,-0.1 -0.911 37.2 -95.7-109.5 131.0 -0.2 -2.8 9.3 28 273 A I - 0 0 24 -2,-0.5 25,-0.2 1,-0.1 -1,-0.1 -0.034 26.4-139.8 -40.6 140.2 -0.4 -6.4 10.5 29 274 A P - 0 0 75 0, 0.0 23,-0.2 0, 0.0 -1,-0.1 0.834 43.8-125.1 -75.0 -34.9 -3.2 -6.8 13.0 30 275 A G S S+ 0 0 2 21,-0.1 51,-0.2 3,-0.0 21,-0.2 -0.165 84.2 71.6 106.2 159.4 -1.2 -9.2 15.2 31 276 A N S S+ 0 0 77 18,-2.3 18,-0.1 20,-0.3 17,-0.1 0.743 71.5 155.8 69.2 23.6 -1.7 -12.7 16.6 32 277 A C - 0 0 3 17,-0.6 16,-1.7 15,-0.1 2,-0.3 -0.035 31.2-143.1 -70.6-179.2 -1.2 -13.9 13.0 33 278 A T E -EF 47 79C 13 46,-1.1 46,-2.8 14,-0.2 14,-0.2 -0.973 2.3-142.5-154.0 136.3 0.1 -17.4 12.2 34 279 A F E - F 0 78C 3 12,-1.4 44,-0.2 -2,-0.3 2,-0.1 -0.266 10.9-171.3 -89.5 179.0 2.3 -18.9 9.6 35 280 A E E + F 0 77C 75 42,-0.9 42,-2.0 10,-0.2 2,-0.3 -0.525 6.9 175.1-176.7 101.6 2.1 -22.2 7.7 36 281 A F B -H 44 0D 0 8,-1.1 8,-1.1 40,-0.3 2,-0.1 -0.878 14.9-147.9-116.3 147.8 4.7 -23.6 5.4 37 282 A S + 0 0 33 -2,-0.3 2,-0.3 6,-0.2 5,-0.1 -0.330 19.9 164.2-100.7-175.3 4.8 -27.0 3.7 38 283 A S - 0 0 27 3,-0.3 5,-0.1 -2,-0.1 33,-0.0 -0.960 39.4-117.3-178.5-174.0 7.6 -29.3 2.7 39 284 A Q S S+ 0 0 161 -2,-0.3 -1,-0.1 3,-0.1 28,-0.0 0.761 108.1 44.1-111.1 -52.8 8.5 -32.8 1.7 40 285 A I S S+ 0 0 120 2,-0.1 2,-0.2 28,-0.0 27,-0.0 0.867 128.9 22.8 -62.4 -37.6 10.7 -34.3 4.4 41 286 A S S S- 0 0 45 1,-0.1 -3,-0.3 3,-0.0 2,-0.2 -0.555 85.3-110.1-119.0-176.0 8.2 -32.8 6.9 42 287 A E - 0 0 165 -2,-0.2 2,-0.2 1,-0.1 -6,-0.1 -0.445 44.5 -71.7-108.3-177.0 4.6 -31.8 7.0 43 288 A V + 0 0 76 -2,-0.2 2,-0.3 -5,-0.1 -6,-0.2 -0.485 51.2 178.4 -77.5 147.4 2.8 -28.5 7.2 44 289 A F B -H 36 0D 130 -8,-1.1 -8,-1.1 -2,-0.2 2,-0.5 -0.990 22.9-138.6-152.9 143.0 2.8 -26.6 10.5 45 290 A S - 0 0 29 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.903 16.5-152.7-107.3 127.9 1.5 -23.3 11.9 46 291 A I - 0 0 26 -2,-0.5 -12,-1.4 -12,-0.1 2,-0.7 -0.820 21.2-119.0-101.0 137.2 3.6 -21.3 14.2 47 292 A K B -E 33 0C 165 -2,-0.4 -14,-0.2 -14,-0.2 2,-0.1 -0.650 34.2-154.2 -77.5 113.0 2.0 -18.9 16.7 48 293 A M - 0 0 22 -16,-1.7 13,-0.1 -2,-0.7 11,-0.0 -0.371 28.1 -80.2 -84.1 165.5 3.2 -15.4 15.9 49 294 A G - 0 0 24 11,-0.2 -18,-2.3 1,-0.1 -17,-0.6 -0.263 28.5-133.6 -64.5 151.4 3.4 -12.5 18.3 50 295 A P S S+ 0 0 98 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 0.803 83.2 89.7 -75.0 -31.3 0.3 -10.6 19.3 51 296 A H S S- 0 0 134 -21,-0.2 -20,-0.3 1,-0.1 -21,-0.1 -0.395 85.3-112.4 -68.1 143.1 2.0 -7.3 18.8 52 297 A E - 0 0 83 -23,-0.2 -1,-0.1 -22,-0.1 -3,-0.0 0.024 16.2-139.9 -65.4 179.4 1.9 -5.8 15.3 53 298 A I - 0 0 24 -25,-0.2 5,-0.2 4,-0.1 4,-0.2 0.781 31.0-131.8-105.8 -76.1 4.9 -5.5 13.0 54 299 A G - 0 0 16 3,-0.3 -32,-0.3 2,-0.2 -30,-0.1 -0.317 32.3 -79.1 128.0 149.7 4.8 -2.2 11.1 55 300 A I S S+ 0 0 62 1,-0.2 -1,-0.1 -2,-0.1 -29,-0.0 0.758 140.5 16.8 -46.7 -25.5 5.3 -1.0 7.5 56 301 A K S S+ 0 0 159 -3,-0.1 -1,-0.2 2,-0.1 -2,-0.2 0.669 104.0 108.9-115.6 -37.7 8.9 -1.4 8.4 57 302 A G - 0 0 26 -4,-0.2 -35,-0.9 -36,-0.1 -3,-0.3 0.047 57.8-144.0 -40.9 151.0 8.7 -3.7 11.5 58 303 A Q E -C 21 0A 104 -5,-0.2 2,-0.3 -37,-0.2 -37,-0.3 -0.509 6.7-146.7-113.3-177.5 9.9 -7.2 10.9 59 304 A K E -C 20 0A 33 -39,-1.8 -39,-2.8 -2,-0.2 2,-0.3 -0.984 3.7-147.3-154.5 143.6 8.8 -10.6 12.2 60 305 A E E -C 19 0A 68 -2,-0.3 -11,-0.2 -41,-0.2 -41,-0.2 -0.851 9.8-174.6-114.8 150.4 10.5 -13.9 13.0 61 306 A L - 0 0 2 -43,-1.3 -43,-0.2 -2,-0.3 -42,-0.1 -0.457 13.9-172.4-141.1 62.6 9.3 -17.4 12.7 62 307 A W - 0 0 134 -45,-0.1 2,-0.3 -44,-0.1 -45,-0.2 -0.340 12.2-176.8 -59.3 134.9 11.9 -19.7 14.2 63 308 A F - 0 0 15 -47,-0.2 -47,-1.7 2,-0.2 4,-0.1 -0.955 15.7 -95.6-137.2 155.1 11.1 -23.3 13.6 64 309 A F S S- 0 0 160 -2,-0.3 2,-0.2 -49,-0.2 -49,-0.1 -0.979 84.1 -10.0-135.6 147.4 12.6 -26.7 14.5 65 310 A P S S- 0 0 93 0, 0.0 -49,-0.7 0, 0.0 2,-0.3 -0.611 99.2-110.6 -75.0 -53.7 14.2 -28.6 13.5 66 311 A S - 0 0 43 -51,-0.2 -2,-0.1 -2,-0.2 -50,-0.1 -0.961 15.9-124.2 178.4 174.7 14.4 -27.2 10.0 67 312 A L - 0 0 5 -2,-0.3 2,-0.1 -4,-0.1 -29,-0.1 -0.943 32.0 -95.3-138.8 158.4 13.5 -27.6 6.4 68 313 A P - 0 0 50 0, 0.0 -29,-0.1 0, 0.0 -57,-0.1 -0.459 56.7 -92.1 -75.0 145.3 15.2 -27.8 3.0 69 314 A T S S+ 0 0 45 -2,-0.1 2,-0.2 -58,-0.1 26,-0.0 -0.822 86.1 35.0-123.0 162.5 15.5 -24.7 0.9 70 315 A P - 0 0 59 0, 0.0 2,-0.3 0, 0.0 25,-0.1 0.636 64.9-145.1 -75.0-175.5 14.7 -22.9 -1.0 71 316 A L > + 0 0 2 23,-0.3 3,-0.9 -2,-0.2 2,-0.4 -0.476 37.9 158.9-109.8 57.8 10.9 -23.3 -0.5 72 317 A S T 3 + 0 0 50 -2,-0.3 20,-0.2 1,-0.2 19,-0.1 -0.669 67.3 15.8 -85.4 134.7 9.9 -22.9 -4.1 73 318 A N T 3 S+ 0 0 156 18,-2.2 -1,-0.2 17,-0.4 18,-0.1 0.463 102.9 127.7 83.2 2.6 6.5 -24.3 -5.1 74 319 A Y < - 0 0 34 -3,-0.9 -1,-0.3 17,-0.2 -38,-0.1 -0.128 63.5-129.6 -81.1-178.5 5.7 -24.3 -1.4 75 320 A T + 0 0 54 -3,-0.1 14,-0.7 2,-0.1 -39,-0.2 0.873 37.5 159.0 -97.6 -58.3 2.7 -22.8 0.4 76 321 A M + 0 0 1 12,-0.1 13,-0.7 1,-0.1 -40,-0.3 0.831 29.4 166.7 28.6 64.6 4.2 -20.8 3.3 77 322 A K E -FG 35 88C 68 -42,-2.0 -42,-0.9 11,-0.2 2,-0.4 -0.196 31.3-124.1 -92.7-172.6 1.1 -18.7 3.5 78 323 A V E -FG 34 87C 11 9,-1.8 8,-2.7 -44,-0.2 9,-2.0 -0.993 20.5-168.4-141.8 130.5 -0.1 -16.3 6.2 79 324 A V E -FG 33 85C 11 -46,-2.8 -46,-1.1 -2,-0.4 6,-0.3 -0.550 18.2-119.3-109.5 176.1 -3.3 -16.4 8.3 80 325 A N > - 0 0 30 4,-1.2 3,-1.9 -48,-0.2 -1,-0.1 -0.197 48.6 -75.2-101.0-165.6 -4.9 -13.8 10.6 81 326 A Q T 3 S+ 0 0 109 1,-0.3 -49,-0.1 -51,-0.2 -50,-0.1 0.562 135.0 55.3 -70.1 -7.9 -5.8 -14.0 14.3 82 327 A D T 3 S- 0 0 117 2,-0.2 -1,-0.3 -49,-0.1 3,-0.1 0.170 120.6-110.1-107.8 13.3 -8.7 -16.2 13.1 83 328 A G S < S+ 0 0 52 -3,-1.9 2,-0.5 1,-0.2 -2,-0.1 0.777 72.9 145.2 62.3 27.6 -6.3 -18.6 11.4 84 329 A E - 0 0 102 1,-0.0 -4,-1.2 2,-0.0 2,-0.3 -0.871 60.7-107.9-102.8 127.2 -7.7 -17.3 8.1 85 330 A T E +G 79 0C 66 -2,-0.5 -6,-0.3 -6,-0.3 3,-0.1 -0.328 43.9 168.2 -54.1 111.0 -5.4 -17.1 5.1 86 331 A I E + 0 0 50 -8,-2.7 2,-0.3 -2,-0.3 -7,-0.2 0.799 65.6 3.9 -94.3 -37.9 -4.8 -13.3 4.7 87 332 A L E -G 78 0C 24 -9,-2.0 -9,-1.8 14,-0.2 2,-0.3 -0.828 62.8-144.2-139.4 176.2 -2.0 -13.6 2.3 88 333 A V E -G 77 0C 9 -2,-0.3 12,-2.9 -11,-0.2 2,-0.4 -0.969 16.5-128.9-151.0 131.1 -0.0 -16.2 0.3 89 334 A G - 0 0 4 -14,-0.7 10,-0.2 -13,-0.7 8,-0.0 -0.670 9.0-144.5 -83.8 130.2 3.6 -16.4 -0.6 90 335 A K - 0 0 65 8,-0.5 -17,-0.4 -2,-0.4 -1,-0.1 0.777 28.0-152.4 -61.1 -26.6 4.4 -17.0 -4.3 91 336 A C - 0 0 4 -15,-0.1 -18,-2.2 -19,-0.1 -17,-0.2 0.967 21.1-171.6 48.2 76.6 7.3 -19.0 -3.0 92 337 A A - 0 0 27 4,-0.6 2,-2.9 2,-0.2 -21,-0.2 -0.230 43.4 -73.8 -88.3-178.7 9.5 -18.6 -6.1 93 338 A D S S+ 0 0 131 -21,-0.1 2,-0.3 -23,-0.1 -1,-0.1 -0.371 109.7 70.1 -75.9 62.4 12.8 -20.3 -6.9 94 339 A S S S- 0 0 61 -2,-2.9 -23,-0.3 2,-0.3 -2,-0.2 -0.927 92.3-109.5-173.6 150.7 14.6 -18.1 -4.3 95 340 A N S S+ 0 0 58 -2,-0.3 2,-0.2 -25,-0.1 -86,-0.2 0.692 97.0 94.7 -58.9 -17.6 14.8 -17.7 -0.5 96 341 A E - 0 0 116 -88,-0.1 -4,-0.6 -90,-0.1 2,-0.3 -0.492 56.4-178.3 -77.9 146.4 13.0 -14.4 -1.3 97 342 A I - 0 0 5 -90,-0.5 -90,-0.5 -2,-0.2 2,-0.4 -0.995 15.5-171.5-148.0 141.2 9.2 -14.4 -1.0 98 343 A T B -B 6 0A 40 -2,-0.3 -8,-0.5 -92,-0.2 -92,-0.2 -0.837 26.5-131.0-138.8 97.8 6.5 -11.7 -1.6 99 344 A L - 0 0 3 -94,-0.6 -10,-0.3 -2,-0.4 -94,-0.1 -0.157 25.3-177.1 -46.8 133.5 3.0 -12.5 -0.5 100 345 A K - 0 0 99 -12,-2.9 -1,-0.1 -96,-0.1 -11,-0.1 0.849 38.2 -90.0 -98.1 -76.8 0.6 -11.7 -3.4 101 346 A S - 0 0 66 -13,-0.3 -14,-0.2 1,-0.1 -15,-0.1 -0.633 14.4-135.8 159.8 142.1 -3.0 -12.3 -2.3 102 347 A P 0 0 73 0, 0.0 -1,-0.1 0, 0.0 -15,-0.1 0.977 360.0 360.0 -75.0 -80.3 -5.6 -15.0 -2.2 103 348 A L 0 0 206 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.809 360.0 360.0-105.4 360.0 -8.9 -13.5 -3.3