==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 23-JUN-10 2KZR . COMPND 2 MOLECULE: UBIQUITIN THIOESTERASE OTU1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR S.CHITAYAT,A.GUTMANAS,A.LEMAK,A.YEE,I.BEZSONOVA,B.WU,R.S.DOH . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5650.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 65.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 12.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 19 22.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A W 0 0 99 0, 0.0 2,-1.6 0, 0.0 16,-0.6 0.000 360.0 360.0 360.0 102.5 2.5 0.3 -2.1 2 2 A R - 0 0 176 14,-0.1 13,-0.2 13,-0.1 2,-0.2 -0.604 360.0-165.3 -83.9 74.0 5.7 -1.8 -1.5 3 3 A V E -A 14 0A 4 -2,-1.6 11,-2.4 11,-1.6 2,-1.0 -0.431 18.9-129.8 -77.9 136.2 7.8 0.6 -3.7 4 4 A R E -Ab 13 71A 148 66,-1.4 68,-2.3 9,-0.2 2,-1.0 -0.729 20.1-160.2 -89.1 97.4 11.3 -0.6 -4.9 5 5 A C E -Ab 12 72A 2 7,-2.7 7,-1.3 -2,-1.0 2,-0.8 -0.719 4.8-154.6 -81.2 100.1 13.8 2.3 -4.1 6 6 A K E +Ab 11 73A 85 66,-1.7 68,-2.5 -2,-1.0 5,-0.2 -0.722 41.3 134.6 -74.5 109.0 16.8 1.8 -6.3 7 7 A A E > -A 10 0A 12 3,-1.8 3,-2.0 -2,-0.8 2,-0.2 -0.732 59.3 -42.3-144.8-172.8 19.6 3.6 -4.3 8 8 A K T 3 S+ 0 0 123 1,-0.3 67,-0.0 -2,-0.2 -1,-0.0 -0.459 127.2 24.3 -67.3 125.2 23.2 3.3 -3.0 9 9 A G T 3 S- 0 0 92 -2,-0.2 2,-0.3 -3,-0.0 -1,-0.3 0.201 127.3 -82.3 99.3 -12.4 23.8 -0.3 -1.7 10 10 A G E < S-A 7 0A 29 -3,-2.0 -3,-1.8 2,-0.0 2,-0.1 -0.810 81.8 -4.3 121.4-159.1 21.0 -1.6 -3.9 11 11 A T E -A 6 0A 93 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.396 52.4-162.1 -71.2 146.8 17.2 -1.9 -3.7 12 12 A H E -A 5 0A 53 -7,-1.3 -7,-2.7 -2,-0.1 2,-0.9 -0.992 15.1-136.8-135.0 123.2 15.3 -0.7 -0.6 13 13 A L E -A 4 0A 94 -2,-0.4 2,-0.8 -9,-0.2 -9,-0.2 -0.727 19.3-166.4 -91.0 102.6 11.7 -1.9 0.0 14 14 A L E +A 3 0A 5 -11,-2.4 -11,-1.6 -2,-0.9 3,-0.2 -0.832 11.2 175.3 -92.2 107.0 9.6 1.1 1.2 15 15 A Q + 0 0 127 -2,-0.8 3,-0.1 -13,-0.2 -13,-0.1 -0.341 55.2 63.2 -90.2-177.1 6.2 0.0 2.7 16 16 A G S S+ 0 0 67 1,-0.3 2,-0.5 -2,-0.1 -1,-0.1 0.138 70.5 131.9 85.1 -19.5 3.7 2.4 4.3 17 17 A L - 0 0 3 -16,-0.6 -1,-0.3 -3,-0.2 2,-0.2 -0.552 36.6-170.8 -71.9 114.9 3.3 4.3 1.0 18 18 A S > - 0 0 53 -2,-0.5 3,-1.5 -3,-0.1 43,-0.3 -0.556 39.7-103.2 -92.0 168.1 -0.4 4.8 0.1 19 19 A S T 3 S+ 0 0 63 1,-0.3 43,-1.0 -2,-0.2 42,-0.4 0.837 124.0 49.0 -59.3 -33.8 -1.7 6.2 -3.3 20 20 A R T 3 S+ 0 0 203 41,-0.2 2,-0.4 40,-0.2 -1,-0.3 0.038 78.4 135.0-101.1 24.7 -2.3 9.6 -1.6 21 21 A T < - 0 0 14 -3,-1.5 40,-1.3 1,-0.1 41,-0.1 -0.623 51.8-131.1 -72.3 127.4 1.2 9.8 0.1 22 22 A R B > -D 60 0B 85 -2,-0.4 4,-2.5 38,-0.2 3,-0.3 -0.231 18.8-103.0 -79.8 169.2 2.6 13.3 -0.4 23 23 A L H >>S+ 0 0 20 36,-1.3 4,-2.4 34,-0.3 5,-0.6 0.921 121.8 49.5 -53.5 -54.3 6.1 14.4 -1.6 24 24 A R H 45S+ 0 0 105 33,-1.7 -1,-0.2 1,-0.2 4,-0.2 0.752 113.7 47.0 -63.9 -26.0 7.3 15.3 1.9 25 25 A E H >5S+ 0 0 82 32,-0.3 4,-1.7 -3,-0.3 -1,-0.2 0.904 118.0 42.2 -77.1 -43.5 6.1 11.9 3.2 26 26 A L H >X5S+ 0 0 3 -4,-2.5 4,-2.0 2,-0.2 3,-0.6 0.992 122.0 35.3 -68.6 -66.8 7.7 10.0 0.2 27 27 A Q H 3X5S+ 0 0 17 -4,-2.4 4,-1.6 1,-0.2 -1,-0.2 0.704 115.6 61.8 -62.5 -21.3 11.1 11.7 -0.1 28 28 A G H 3>S+ 0 0 3 -4,-2.0 4,-1.4 1,-0.2 5,-1.2 0.876 103.2 55.8 -59.7 -39.8 13.7 8.0 1.5 31 31 A A H 3<5S+ 0 0 40 -4,-1.6 -1,-0.2 4,-0.2 -2,-0.2 0.722 115.5 39.0 -64.2 -24.6 15.8 10.4 3.6 32 32 A A H <<5S+ 0 0 87 -3,-0.8 -2,-0.2 -4,-0.6 -1,-0.2 0.791 120.3 44.0 -92.2 -36.1 15.4 8.0 6.6 33 33 A I H <5S+ 0 0 83 -4,-2.6 -3,-0.2 1,-0.1 -2,-0.2 0.993 135.2 9.3 -75.6 -68.5 15.8 4.6 4.6 34 34 A T T <5S- 0 0 23 -4,-1.4 -3,-0.2 2,-0.1 -1,-0.1 0.488 99.9-122.1 -96.7 -7.2 18.7 5.2 2.2 35 35 A G < + 0 0 33 -5,-1.2 2,-0.6 1,-0.2 -4,-0.2 0.516 60.2 146.6 83.0 6.9 19.7 8.5 3.9 36 36 A I - 0 0 0 -6,-0.9 -1,-0.2 2,-0.0 -2,-0.1 -0.701 47.6-130.3 -84.5 114.6 19.4 10.6 0.7 37 37 A A >> - 0 0 22 -2,-0.6 3,-2.0 1,-0.1 4,-1.0 -0.307 27.3-108.6 -56.7 144.7 18.2 14.2 1.4 38 38 A P T 34 S+ 0 0 71 0, 0.0 -1,-0.1 0, 0.0 -10,-0.1 0.681 120.0 52.0 -55.1 -21.4 15.2 15.2 -0.9 39 39 A G T 34 S+ 0 0 71 1,-0.2 40,-0.1 3,-0.1 -2,-0.0 0.656 106.8 51.0 -87.6 -20.2 17.6 17.6 -2.8 40 40 A S T <4 S+ 0 0 2 -3,-2.0 37,-0.8 38,-0.1 2,-0.3 0.589 108.0 63.5 -90.3 -16.5 20.2 15.0 -3.5 41 41 A Q < - 0 0 4 -4,-1.0 2,-0.3 35,-0.2 33,-0.1 -0.823 64.9-162.1-108.9 150.9 17.6 12.5 -5.0 42 42 A R - 0 0 104 31,-0.4 2,-1.2 -2,-0.3 33,-0.4 -0.966 30.4-109.6-130.2 145.9 15.4 12.9 -8.1 43 43 A I + 0 0 2 9,-0.4 2,-0.4 -2,-0.3 9,-0.3 -0.670 52.6 158.4 -81.5 95.4 12.1 11.0 -8.9 44 44 A L E -C 73 0A 21 -2,-1.2 29,-2.2 29,-0.5 2,-0.2 -0.955 24.2-152.1-117.7 139.4 13.3 8.8 -11.8 45 45 A V E -C 72 0A 4 -2,-0.4 27,-0.2 2,-0.3 21,-0.1 -0.714 26.9-110.9-113.3 163.2 11.4 5.6 -12.8 46 46 A G S S+ 0 0 52 25,-0.9 -1,-0.1 -2,-0.2 26,-0.1 0.908 104.8 65.1 -60.2 -49.1 12.4 2.4 -14.5 47 47 A Y S S- 0 0 101 1,-0.2 -2,-0.3 24,-0.1 0, 0.0 -0.556 124.4 -62.0 -69.7 145.5 10.5 3.1 -17.7 48 48 A P - 0 0 112 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.015 61.7-151.7 -41.2 101.5 12.0 6.3 -19.5 49 49 A P - 0 0 42 0, 0.0 -5,-0.1 0, 0.0 -3,-0.0 -0.549 14.4-142.9 -76.7 145.6 11.5 9.2 -17.0 50 50 A E - 0 0 169 -2,-0.2 3,-0.1 3,-0.0 -6,-0.1 0.184 49.3-105.7 -91.7 15.9 11.1 12.8 -18.4 51 51 A C - 0 0 73 1,-0.2 -7,-0.1 -8,-0.1 -8,-0.0 0.893 48.2-150.8 59.8 46.5 13.2 14.1 -15.4 52 52 A L - 0 0 49 -9,-0.3 2,-0.7 1,-0.1 -9,-0.4 -0.171 4.9-135.1 -55.9 130.0 10.0 15.5 -13.8 53 53 A D - 0 0 136 -3,-0.1 2,-1.5 -11,-0.1 -1,-0.1 -0.823 10.0-141.4 -91.4 111.1 10.4 18.6 -11.6 54 54 A L + 0 0 35 -2,-0.7 -1,-0.0 1,-0.2 -2,-0.0 -0.618 27.2 175.6 -72.7 87.9 8.4 18.1 -8.3 55 55 A S + 0 0 104 -2,-1.5 2,-0.2 2,-0.0 -1,-0.2 0.055 58.4 47.1 -89.5 26.2 7.3 21.8 -8.1 56 56 A D - 0 0 76 1,-0.1 -2,-0.0 3,-0.1 0, 0.0 -0.638 61.9-147.8-145.7-168.4 5.1 21.2 -5.0 57 57 A R S S+ 0 0 155 -2,-0.2 -33,-1.7 -34,-0.1 -34,-0.3 0.393 96.4 51.8-141.9 -29.2 5.3 19.5 -1.5 58 58 A D S S+ 0 0 73 -36,-0.2 2,-0.0 -35,-0.2 -2,-0.0 0.480 80.7 126.2 -90.6 -8.0 1.6 18.3 -0.8 59 59 A I - 0 0 31 -37,-0.1 -36,-1.3 1,-0.1 2,-0.1 -0.288 53.3-137.6 -59.2 131.9 1.6 16.5 -4.3 60 60 A T B >> -D 22 0B 46 -38,-0.2 4,-1.9 -37,-0.1 3,-1.0 -0.398 20.3-109.9 -96.3 168.6 0.6 12.8 -4.0 61 61 A L T 34 S+ 0 0 1 -40,-1.3 5,-0.3 -42,-0.4 -41,-0.2 0.650 115.8 67.4 -69.7 -20.2 1.9 9.5 -5.6 62 62 A G T 34 S+ 0 0 60 -43,-1.0 -1,-0.3 1,-0.2 -42,-0.1 0.772 108.8 36.3 -68.1 -28.9 -1.4 9.4 -7.6 63 63 A D T <4 S+ 0 0 118 -3,-1.0 -2,-0.2 2,-0.0 -1,-0.2 0.810 113.4 69.1 -88.1 -39.2 -0.1 12.5 -9.5 64 64 A L S < S- 0 0 13 -4,-1.9 -4,-0.0 1,-0.1 -10,-0.0 -0.394 97.4-106.8 -79.5 156.7 3.5 11.4 -9.5 65 65 A P S S+ 0 0 36 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.214 76.9 128.2 -72.9 18.5 4.9 8.3 -11.6 66 66 A I - 0 0 4 -5,-0.3 2,-0.2 -47,-0.1 -21,-0.0 -0.640 38.4-177.3 -73.1 124.4 5.2 6.2 -8.4 67 67 A Q > - 0 0 101 -2,-0.4 3,-1.8 -65,-0.0 2,-1.0 -0.765 41.6 -73.3-119.1 169.8 3.4 2.8 -8.9 68 68 A S T 3 S- 0 0 89 1,-0.3 -65,-0.1 -2,-0.2 -50,-0.0 -0.505 121.2 -8.6 -68.5 96.5 2.8 -0.2 -6.6 69 69 A G T 3 S+ 0 0 26 -2,-1.0 -1,-0.3 1,-0.2 -66,-0.1 0.713 98.6 158.8 86.8 25.0 6.3 -1.8 -6.4 70 70 A D < - 0 0 26 -3,-1.8 -66,-1.4 1,-0.1 2,-1.0 -0.382 50.0-104.2 -80.4 158.0 7.8 0.4 -9.1 71 71 A M E -b 4 0A 45 -68,-0.1 -25,-0.9 -66,-0.1 2,-0.7 -0.734 37.2-173.2 -86.9 97.9 11.6 1.0 -9.6 72 72 A L E -bC 5 45A 6 -68,-2.3 -66,-1.7 -2,-1.0 2,-1.2 -0.874 17.7-143.7 -94.9 107.0 12.2 4.6 -8.2 73 73 A I E -bC 6 44A 53 -29,-2.2 2,-0.9 -2,-0.7 -29,-0.5 -0.631 16.6-169.2 -76.3 93.3 15.9 5.5 -9.0 74 74 A V - 0 0 4 -68,-2.5 -66,-0.2 -2,-1.2 -31,-0.1 -0.839 10.3-164.4 -82.7 103.5 17.0 7.5 -6.0 75 75 A E - 0 0 51 -2,-0.9 2,-0.4 -33,-0.4 -35,-0.1 -0.335 14.6-132.2 -78.7 170.1 20.3 9.0 -6.9 76 76 A E - 0 0 50 -35,-0.1 -35,-0.2 -2,-0.1 -36,-0.0 -0.944 17.4-176.5-129.6 107.0 22.8 10.5 -4.5 77 77 A D - 0 0 95 -37,-0.8 2,-2.0 -2,-0.4 -36,-0.1 0.473 34.0-141.4 -80.2 -4.0 24.2 14.0 -5.5 78 78 A Q S S+ 0 0 136 1,-0.1 2,-1.0 -38,-0.1 -1,-0.1 -0.297 74.0 100.2 78.7 -51.2 26.5 13.7 -2.3 79 79 A T + 0 0 110 -2,-2.0 -2,-0.1 -40,-0.1 -1,-0.1 -0.557 51.7 127.0 -71.9 99.6 26.1 17.4 -1.4 80 80 A R S S- 0 0 76 -2,-1.0 2,-1.2 -40,-0.1 -44,-0.0 -0.966 75.1 -72.0-149.4 156.6 23.5 17.4 1.4 81 81 A P + 0 0 132 0, 0.0 2,-0.7 0, 0.0 3,-0.2 -0.373 58.1 178.9 -56.3 89.0 23.1 18.8 5.1 82 82 A K + 0 0 156 -2,-1.2 -2,-0.0 1,-0.2 -3,-0.0 -0.885 33.6 120.1-101.2 104.7 25.6 16.3 6.7 83 83 A A + 0 0 97 -2,-0.7 -1,-0.2 1,-0.2 3,-0.0 0.325 68.8 53.5-137.3 -9.1 25.9 17.0 10.5 84 84 A S - 0 0 76 -3,-0.2 -1,-0.2 1,-0.1 0, 0.0 -0.944 63.5-144.5-131.5 146.9 24.7 13.7 11.9 85 85 A P 0 0 129 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.596 360.0 360.0 -79.0 -15.0 25.6 9.9 11.3 86 86 A S 0 0 174 -3,-0.0 -54,-0.1 -51,-0.0 -51,-0.0 -0.910 360.0 360.0-140.3 360.0 21.9 9.1 11.8