==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 30-JUN-10 2L08 . COMPND 2 MOLECULE: REGULATOR OF NONSENSE TRANSCRIPTS 3A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.MANI,L.MAO,C.CICCOSANTI,R.SHASTRY,T.B.ACTON,R.XIAO,G.V.T.S . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7132.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 51.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 17.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 252 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 135.4 20.3 27.2 13.9 2 2 A G - 0 0 65 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.863 360.0 -74.3-176.1-148.9 20.3 24.5 11.1 3 3 A H - 0 0 171 -2,-0.2 0, 0.0 1,-0.0 0, 0.0 -0.984 22.7-127.4-140.3 154.2 19.5 20.8 10.5 4 4 A H - 0 0 180 -2,-0.3 -1,-0.0 1,-0.0 0, 0.0 0.568 51.7-121.3 -75.0 -9.1 21.1 17.5 11.2 5 5 A H - 0 0 170 1,-0.1 2,-0.3 2,-0.0 -2,-0.0 0.968 31.2-156.6 63.6 90.2 20.9 16.5 7.5 6 6 A H - 0 0 120 1,-0.1 3,-0.1 3,-0.0 -1,-0.1 -0.707 26.7 -91.1 -97.2 148.5 18.9 13.3 7.2 7 7 A H - 0 0 124 -2,-0.3 2,-0.2 1,-0.1 -1,-0.1 -0.164 56.5 -86.9 -56.6 151.6 19.1 10.8 4.3 8 8 A H - 0 0 149 54,-0.1 2,-0.8 1,-0.1 -1,-0.1 -0.381 32.6-136.2 -72.8 131.1 16.7 11.4 1.4 9 9 A S - 0 0 61 -2,-0.2 2,-0.3 51,-0.1 -1,-0.1 -0.746 21.6-160.7 -87.7 108.0 13.2 9.9 1.5 10 10 A H - 0 0 84 -2,-0.8 50,-0.2 1,-0.1 2,-0.1 -0.701 19.5-113.7 -91.7 142.3 12.3 8.3 -1.9 11 11 A M - 0 0 63 -2,-0.3 82,-2.0 82,-0.2 2,-0.3 -0.408 30.6-166.2 -77.9 149.2 8.7 7.7 -2.8 12 12 A V E -AB 58 92A 2 46,-2.2 46,-2.8 80,-0.3 2,-0.3 -0.973 4.1-165.5-137.7 146.5 7.3 4.1 -3.3 13 13 A V E -AB 57 91A 7 78,-2.4 78,-2.5 -2,-0.3 2,-0.3 -0.879 16.0-126.2-130.4 163.9 4.1 2.6 -4.9 14 14 A I E - B 0 90A 3 42,-1.7 2,-0.3 -2,-0.3 76,-0.2 -0.854 22.0-161.7-112.5 144.8 2.3 -0.8 -4.9 15 15 A R E + B 0 89A 109 74,-2.3 74,-2.1 -2,-0.3 60,-0.1 -0.845 59.5 36.5-124.5 162.9 1.1 -2.8 -8.0 16 16 A R + 0 0 132 -2,-0.3 -1,-0.2 1,-0.2 39,-0.1 0.890 67.0 156.7 65.4 46.0 -1.3 -5.7 -8.8 17 17 A L - 0 0 8 -3,-0.2 37,-0.5 37,-0.1 -1,-0.2 -0.879 22.4-165.6-103.6 106.2 -4.1 -4.6 -6.4 18 18 A P - 0 0 54 0, 0.0 3,-0.4 0, 0.0 2,-0.4 -0.634 37.1 -90.1 -85.1 149.5 -7.6 -5.9 -7.4 19 19 A P S S+ 0 0 31 0, 0.0 30,-0.2 0, 0.0 32,-0.1 -0.421 88.4 94.0 -62.7 115.5 -10.8 -4.4 -5.8 20 20 A G + 0 0 0 1,-0.6 26,-0.6 -2,-0.4 27,-0.2 0.119 66.3 49.4-160.5 -70.5 -11.7 -6.4 -2.7 21 21 A L S S- 0 0 2 -3,-0.4 -1,-0.6 24,-0.2 2,-0.2 -0.478 73.6-118.7 -88.0 159.7 -10.4 -5.2 0.8 22 22 A T >> - 0 0 31 21,-0.2 3,-2.2 -2,-0.1 4,-1.6 -0.625 33.1 -99.9 -96.5 155.4 -10.7 -1.7 2.3 23 23 A K H 3> S+ 0 0 80 19,-0.6 4,-3.1 1,-0.3 5,-0.4 0.799 120.8 65.3 -41.9 -37.6 -7.8 0.6 3.3 24 24 A E H 34 S+ 0 0 156 1,-0.3 -1,-0.3 2,-0.2 4,-0.2 0.877 116.8 26.2 -55.3 -41.3 -8.4 -0.5 6.9 25 25 A Q H <4 S+ 0 0 92 -3,-2.2 -1,-0.3 2,-0.1 -2,-0.2 0.501 124.7 55.8 -96.2 -9.4 -7.4 -4.1 6.0 26 26 A L H >< S+ 0 0 3 -4,-1.6 3,-0.9 16,-0.2 4,-0.5 0.887 102.9 46.9 -92.3 -47.0 -5.2 -3.0 3.1 27 27 A E T 3X S+ 0 0 19 -4,-3.1 4,-2.5 1,-0.2 3,-0.4 0.693 90.3 85.4 -73.5 -16.6 -2.7 -0.5 4.6 28 28 A E T 34 S+ 0 0 105 -5,-0.4 -1,-0.2 1,-0.3 -2,-0.1 0.834 104.0 29.7 -54.6 -35.1 -1.9 -2.9 7.5 29 29 A Q T <4 S+ 0 0 20 -3,-0.9 -1,-0.3 -4,-0.2 -2,-0.2 0.519 118.4 59.1 -99.1 -8.6 0.7 -4.6 5.3 30 30 A L T 4 S+ 0 0 7 -4,-0.5 -2,-0.2 -3,-0.4 -3,-0.1 0.709 117.6 25.3 -93.0 -23.6 1.5 -1.4 3.3 31 31 A R S < S+ 0 0 98 -4,-2.5 -1,-0.1 1,-0.1 -2,-0.1 -0.032 75.6 116.7-134.9 39.5 2.7 0.8 6.2 32 32 A P + 0 0 63 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.162 51.8 130.6 -86.7 21.7 3.9 -1.5 9.1 33 33 A L - 0 0 15 4,-0.1 3,-0.3 1,-0.1 -3,-0.0 -0.226 61.9-130.1 -75.2 160.3 7.4 0.1 8.6 34 34 A P S S+ 0 0 94 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 0.988 96.0 19.7 -70.4 -72.6 9.7 1.5 11.3 35 35 A A S S+ 0 0 44 27,-0.1 26,-1.4 2,-0.0 27,-0.8 -0.781 101.6 102.1-107.0 92.8 10.7 5.0 10.0 36 36 A H E -C 60 0A 44 -2,-0.8 24,-0.3 -3,-0.3 2,-0.2 -0.781 52.5-133.5-151.0-173.2 8.1 6.0 7.3 37 37 A D E -C 59 0A 45 22,-3.0 22,-0.7 -2,-0.2 2,-0.3 -0.711 22.1-134.2-137.2-171.8 5.0 8.0 6.3 38 38 A Y E -C 58 0A 130 -2,-0.2 20,-0.2 20,-0.2 2,-0.1 -0.987 9.5-159.1-156.7 149.4 1.8 7.1 4.4 39 39 A F - 0 0 94 18,-1.4 2,-0.3 -2,-0.3 20,-0.1 -0.244 50.5 -42.1-108.4-166.3 -0.4 8.3 1.6 40 40 A E - 0 0 144 -2,-0.1 17,-1.0 18,-0.0 2,-0.4 -0.498 54.2-160.3 -64.5 120.4 -4.0 7.9 0.4 41 41 A F - 0 0 12 -2,-0.3 -18,-0.2 15,-0.2 15,-0.1 -0.899 16.5-123.1-105.9 135.4 -5.1 4.2 0.5 42 42 A F - 0 0 22 -2,-0.4 -19,-0.6 -20,-0.1 2,-0.3 -0.188 17.7-136.4 -75.3 165.9 -8.1 3.0 -1.6 43 43 A A + 0 0 61 -21,-0.2 2,-0.3 -20,-0.1 -21,-0.2 -0.915 23.7 168.5-123.8 150.2 -11.3 1.3 -0.3 44 44 A A - 0 0 3 -2,-0.3 2,-0.6 -24,-0.1 5,-0.1 -0.984 29.7-131.4-160.7 146.7 -13.3 -1.7 -1.7 45 45 A D - 0 0 106 -2,-0.3 -24,-0.2 3,-0.2 -2,-0.0 -0.908 6.7-160.1-103.4 114.3 -16.1 -4.1 -0.8 46 46 A L S S+ 0 0 62 -2,-0.6 2,-1.9 -26,-0.6 3,-0.4 0.800 81.7 85.2 -60.6 -28.7 -15.3 -7.8 -1.4 47 47 A S S S- 0 0 100 1,-0.3 -1,-0.2 -27,-0.2 -2,-0.1 -0.567 126.6 -26.5 -72.9 82.9 -19.0 -8.4 -1.3 48 48 A L S S- 0 0 162 -2,-1.9 -1,-0.3 2,-0.0 -3,-0.2 0.970 90.9-121.3 65.1 88.5 -19.4 -7.5 -5.0 49 49 A Y - 0 0 150 -3,-0.4 -3,-0.1 -30,-0.2 -5,-0.1 -0.091 17.4-109.9 -59.0 154.2 -16.4 -5.2 -5.8 50 50 A P - 0 0 60 0, 0.0 2,-2.7 0, 0.0 -1,-0.1 0.152 44.6-127.5 -75.4 22.1 -17.0 -1.6 -7.1 51 51 A H S S+ 0 0 164 -32,-0.1 -2,-0.1 1,-0.1 -3,-0.0 -0.315 74.7 99.7 73.1 -63.9 -15.5 -2.6 -10.6 52 52 A L - 0 0 106 -2,-2.7 2,-0.3 1,-0.1 -1,-0.1 -0.034 69.8-121.8 -62.3 157.1 -12.9 0.1 -10.9 53 53 A Y - 0 0 111 -35,-0.1 2,-0.3 -34,-0.0 -1,-0.1 -0.769 27.4-176.8 -98.3 144.8 -9.1 -0.2 -10.1 54 54 A S - 0 0 42 -37,-0.5 2,-0.4 -2,-0.3 -37,-0.1 -0.992 13.8-142.5-142.0 148.8 -7.2 1.9 -7.6 55 55 A R - 0 0 95 -2,-0.3 2,-0.3 -39,-0.1 -40,-0.1 -0.911 10.5-138.1-118.3 137.2 -3.6 2.1 -6.5 56 56 A A - 0 0 0 -2,-0.4 -42,-1.7 -42,-0.2 2,-0.4 -0.678 15.3-147.4 -92.8 146.4 -2.1 2.7 -3.0 57 57 A Y E -A 13 0A 95 -17,-1.0 -18,-1.4 -2,-0.3 2,-0.4 -0.929 7.2-159.2-119.2 137.4 0.9 5.0 -2.4 58 58 A I E -AC 12 38A 11 -46,-2.8 -46,-2.2 -2,-0.4 2,-0.3 -0.901 2.7-163.4-117.7 142.2 3.7 4.6 0.2 59 59 A N E - C 0 37A 29 -22,-0.7 -22,-3.0 -2,-0.4 2,-0.2 -0.945 7.9-161.1-126.3 147.9 6.0 7.3 1.7 60 60 A F E - C 0 36A 4 -2,-0.3 -24,-0.3 -24,-0.3 -51,-0.1 -0.597 24.9-156.1-119.6 174.9 9.3 6.9 3.6 61 61 A R S S+ 0 0 130 -26,-1.4 -25,-0.2 1,-0.3 -1,-0.1 0.511 85.4 37.0-119.2 -23.7 11.7 8.7 6.0 62 62 A N >> - 0 0 33 -27,-0.8 4,-1.1 -52,-0.1 3,-0.5 -0.994 64.0-142.5-138.5 130.3 14.9 6.7 5.3 63 63 A P H 3> S+ 0 0 39 0, 0.0 4,-1.3 0, 0.0 5,-0.1 0.741 107.2 57.6 -60.8 -23.3 16.3 5.1 2.0 64 64 A D H 3> S+ 0 0 84 2,-0.2 4,-1.2 1,-0.2 0, 0.0 0.858 98.9 56.9 -74.3 -36.2 17.5 2.2 4.2 65 65 A D H <> S+ 0 0 12 -3,-0.5 4,-1.9 2,-0.2 5,-0.3 0.838 103.5 60.0 -60.3 -31.8 14.0 1.5 5.4 66 66 A I H X S+ 0 0 3 -4,-1.1 4,-3.5 1,-0.2 5,-0.3 0.991 103.9 42.6 -59.7 -67.5 13.1 1.2 1.6 67 67 A L H X S+ 0 0 115 -4,-1.3 4,-0.8 1,-0.2 -1,-0.2 0.727 111.1 63.0 -58.1 -20.8 15.4 -1.8 0.7 68 68 A L H X S+ 0 0 82 -4,-1.2 4,-1.0 2,-0.1 -1,-0.2 0.996 119.4 18.5 -62.9 -65.7 14.3 -3.4 4.0 69 69 A F H X S+ 0 0 18 -4,-1.9 4,-2.3 1,-0.2 -2,-0.2 0.781 117.4 68.3 -81.0 -26.9 10.6 -3.7 3.2 70 70 A R H < S+ 0 0 57 -4,-3.5 20,-0.2 -5,-0.3 -1,-0.2 0.841 104.6 43.4 -62.2 -34.2 10.9 -3.4 -0.7 71 71 A D H < S+ 0 0 129 -4,-0.8 3,-0.4 -5,-0.3 -1,-0.2 0.893 116.8 43.7 -79.0 -42.2 12.7 -6.7 -0.9 72 72 A R H < S+ 0 0 151 -4,-1.0 -2,-0.2 1,-0.2 -1,-0.1 0.786 118.3 43.3 -76.9 -29.5 10.5 -8.7 1.5 73 73 A F S >< S+ 0 0 28 -4,-2.3 2,-1.3 2,-0.1 3,-0.8 0.371 78.6 127.5 -96.8 3.2 7.2 -7.4 0.1 74 74 A D T 3 S- 0 0 84 -3,-0.4 15,-0.2 1,-0.3 14,-0.1 -0.458 93.5 -23.4 -64.1 91.5 8.3 -7.7 -3.5 75 75 A G T 3 S+ 0 0 33 -2,-1.3 2,-0.3 13,-1.1 -1,-0.3 0.978 88.8 164.9 72.2 60.4 5.4 -9.7 -5.0 76 76 A Y E < -D 88 0B 60 12,-1.7 12,-1.1 -3,-0.8 2,-0.7 -0.825 36.0-120.7-110.4 149.5 3.8 -11.5 -2.0 77 77 A I E -D 87 0B 79 -2,-0.3 2,-0.4 10,-0.2 8,-0.1 -0.782 24.1-171.6 -95.1 111.3 0.4 -13.2 -1.8 78 78 A F E -D 86 0B 53 8,-2.1 8,-2.7 -2,-0.7 2,-0.5 -0.870 16.1-144.4 -97.6 132.6 -2.1 -11.9 0.8 79 79 A L E -D 85 0B 103 -2,-0.4 6,-0.2 6,-0.2 2,-0.1 -0.849 8.2-156.6-108.9 128.9 -5.2 -14.0 1.2 80 80 A D > - 0 0 22 4,-0.8 3,-1.5 -2,-0.5 5,-0.0 -0.304 43.4 -88.9 -83.9 174.5 -8.8 -12.7 2.0 81 81 A S T 3 S+ 0 0 116 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.883 132.3 48.6 -49.9 -44.2 -11.7 -14.7 3.6 82 82 A K T 3 S- 0 0 172 2,-0.0 -1,-0.3 1,-0.0 -3,-0.0 0.618 126.3-103.7 -71.9 -12.3 -12.7 -15.8 0.1 83 83 A G < + 0 0 39 -3,-1.5 2,-0.7 1,-0.2 -2,-0.1 0.719 57.5 175.0 88.5 26.2 -9.1 -16.8 -0.7 84 84 A L - 0 0 68 1,-0.1 -4,-0.8 2,-0.0 2,-0.6 -0.561 26.6-137.7 -70.8 107.0 -8.5 -13.7 -2.8 85 85 A E E -D 79 0B 134 -2,-0.7 -6,-0.2 -6,-0.2 -1,-0.1 -0.566 16.4-167.2 -68.2 110.3 -4.8 -13.7 -3.8 86 86 A Y E -D 78 0B 5 -8,-2.7 -8,-2.1 -2,-0.6 2,-1.8 -0.864 2.6-165.0 -98.3 98.5 -3.5 -10.2 -3.5 87 87 A P E -D 77 0B 29 0, 0.0 -10,-0.2 0, 0.0 2,-0.1 -0.377 15.3-166.3 -83.5 63.0 -0.0 -10.3 -5.3 88 88 A A E -D 76 0B 6 -2,-1.8 -12,-1.7 -12,-1.1 -13,-1.1 -0.262 5.2-166.2 -60.9 118.0 1.2 -7.0 -3.9 89 89 A V E -B 15 0A 26 -74,-2.1 -74,-2.3 -14,-0.2 2,-0.5 -0.931 4.9-155.4-108.4 119.8 4.3 -5.7 -5.7 90 90 A V E +B 14 0A 7 -2,-0.6 2,-0.3 -17,-0.4 -76,-0.2 -0.794 25.9 156.1 -93.5 128.3 6.3 -2.9 -4.1 91 91 A E E -B 13 0A 45 -78,-2.5 -78,-2.4 -2,-0.5 2,-0.4 -0.918 46.9 -79.3-143.2 172.2 8.5 -0.7 -6.4 92 92 A F E -B 12 0A 95 -2,-0.3 -80,-0.3 -80,-0.2 -81,-0.1 -0.593 48.1-125.1 -77.8 129.1 10.0 2.8 -6.6 93 93 A A - 0 0 8 -82,-2.0 2,-0.8 -2,-0.4 -82,-0.2 -0.423 35.0 -90.0 -74.3 144.7 7.6 5.6 -7.6 94 94 A P - 0 0 114 0, 0.0 -1,-0.1 0, 0.0 -82,-0.1 -0.374 56.2-127.8 -53.9 98.7 8.3 7.9 -10.7 95 95 A F + 0 0 113 -2,-0.8 2,-0.4 -84,-0.1 -85,-0.0 -0.231 32.7 179.5 -62.9 135.1 10.2 10.5 -8.8 96 96 A Q 0 0 148 1,-0.2 -1,-0.0 -3,-0.0 -3,-0.0 -0.922 360.0 360.0-141.4 111.1 9.0 14.2 -9.2 97 97 A K 0 0 226 -2,-0.4 -1,-0.2 0, 0.0 -2,-0.0 0.997 360.0 360.0 -68.8 360.0 10.7 17.1 -7.4