==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-AUG-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 08-JUL-10 2L0K . COMPND 2 MOLECULE: STAGE III SPORULATION PROTEIN D; . SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; . AUTHOR B.CHEN,P.HIMES,Z.LU,A.LIU,H.YAN,L.KROOS . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8071.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 77.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 16.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 54.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 218 0, 0.0 4,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 135.3 2.1 -0.0 -1.2 2 2 A H > + 0 0 104 2,-0.1 4,-0.6 1,-0.1 0, 0.0 -0.148 360.0 110.7-130.2 37.6 4.9 2.4 -2.0 3 3 A D T 4 S+ 0 0 129 2,-0.2 4,-0.2 3,-0.1 -1,-0.1 0.819 85.9 39.1 -80.4 -33.3 5.4 1.7 -5.7 4 4 A Y T >> S+ 0 0 192 2,-0.2 3,-2.4 1,-0.2 4,-0.5 0.931 113.0 52.2 -81.3 -51.0 4.1 5.1 -6.8 5 5 A I H >> S+ 0 0 44 1,-0.3 3,-1.1 2,-0.2 4,-0.8 0.770 93.1 77.5 -56.7 -25.9 5.5 7.3 -4.1 6 6 A K H 3< S+ 0 0 59 -4,-0.6 4,-0.5 1,-0.3 -1,-0.3 0.770 93.3 51.0 -55.8 -25.7 8.9 5.7 -5.0 7 7 A E H <> S+ 0 0 106 -3,-2.4 4,-1.3 1,-0.2 -1,-0.3 0.727 90.5 77.0 -83.8 -24.2 8.9 8.1 -8.0 8 8 A R H S+ 0 0 31 -4,-0.5 4,-2.1 -3,-0.3 5,-0.2 0.916 95.7 51.0 -51.2 -48.7 13.0 10.5 -8.3 11 11 A K H X S+ 0 0 135 -4,-1.3 4,-1.5 2,-0.2 -1,-0.2 0.899 113.0 46.5 -57.1 -42.8 12.2 14.1 -9.2 12 12 A I H >X S+ 0 0 11 -4,-0.6 4,-3.2 2,-0.2 3,-0.5 0.975 111.4 48.3 -64.7 -57.3 14.2 15.3 -6.1 13 13 A G H 3X S+ 0 0 0 -4,-3.0 4,-0.5 1,-0.3 -1,-0.2 0.816 117.9 43.7 -53.6 -32.0 17.2 13.1 -6.7 14 14 A K H 3X S+ 0 0 112 -4,-2.1 4,-0.9 -5,-0.3 -1,-0.3 0.724 114.0 50.8 -85.3 -24.1 17.2 14.3 -10.3 15 15 A Y H S+ 0 0 54 -4,-1.5 4,-2.5 -3,-0.5 5,-0.5 0.887 100.2 61.1 -79.5 -42.1 16.5 17.9 -9.3 16 16 A I H X5S+ 0 0 0 -4,-3.2 4,-1.1 1,-0.3 5,-0.2 0.831 111.9 41.0 -53.7 -33.7 19.3 18.2 -6.8 17 17 A V H <5S+ 0 0 55 -4,-0.5 -1,-0.3 -5,-0.3 -2,-0.2 0.764 109.6 58.7 -85.4 -28.3 21.8 17.4 -9.6 18 18 A E H <5S+ 0 0 152 -4,-0.9 -2,-0.2 1,-0.2 -1,-0.1 0.863 125.9 19.3 -68.6 -36.8 19.9 19.7 -12.1 19 19 A T H <5S- 0 0 42 -4,-2.5 -2,-0.2 2,-0.1 -1,-0.2 0.603 92.8-140.0-106.3 -19.3 20.4 22.7 -9.9 20 20 A K << + 0 0 134 -4,-1.1 -3,-0.2 -5,-0.5 -4,-0.1 0.707 57.5 136.8 65.1 19.4 23.2 21.4 -7.8 21 21 A K - 0 0 103 -6,-0.3 -1,-0.2 -5,-0.2 2,-0.2 -0.187 57.1 -90.4 -86.7-177.2 21.5 23.0 -4.8 22 22 A T >> - 0 0 32 -3,-0.1 3,-2.3 1,-0.1 4,-1.3 -0.496 37.6-101.4 -93.5 164.9 21.0 21.6 -1.3 23 23 A V H 3> S+ 0 0 12 1,-0.3 4,-2.8 2,-0.2 5,-0.2 0.784 121.5 66.6 -53.8 -27.7 18.0 19.6 0.0 24 24 A R H 3> S+ 0 0 137 1,-0.2 4,-1.1 2,-0.2 -1,-0.3 0.787 102.3 46.2 -65.0 -27.5 16.8 22.9 1.6 25 25 A V H <> S+ 0 0 34 -3,-2.3 4,-0.6 2,-0.2 -1,-0.2 0.778 115.7 44.5 -84.7 -29.6 16.3 24.3 -1.9 26 26 A I H X S+ 0 0 0 -4,-1.3 4,-1.7 2,-0.2 -2,-0.2 0.802 111.3 53.4 -83.3 -32.1 14.5 21.2 -3.2 27 27 A A H X>S+ 0 0 0 -4,-2.8 5,-2.4 2,-0.2 4,-2.2 0.917 106.8 50.8 -68.6 -44.8 12.3 20.8 -0.1 28 28 A K H <5S+ 0 0 139 -4,-1.1 -1,-0.2 -5,-0.2 -2,-0.2 0.812 109.9 52.6 -63.0 -30.3 11.0 24.4 -0.3 29 29 A E H <5S+ 0 0 100 -4,-0.6 -1,-0.2 1,-0.2 -2,-0.2 0.886 114.1 40.2 -72.8 -40.5 10.1 23.8 -3.9 30 30 A F H <5S- 0 0 63 -4,-1.7 -2,-0.2 2,-0.1 -1,-0.2 0.734 114.0-117.5 -79.7 -23.9 8.1 20.6 -3.1 31 31 A G T <5S+ 0 0 65 -4,-2.2 2,-0.2 1,-0.3 -3,-0.2 0.746 75.4 109.1 92.0 27.2 6.6 22.2 -0.0 32 32 A V S > - 0 0 55 -2,-0.2 4,-2.1 1,-0.1 3,-1.4 -0.702 27.9-122.3 -96.8 147.4 10.8 19.8 5.2 34 34 A K H 3> S+ 0 0 93 -2,-0.3 4,-2.8 1,-0.3 5,-0.4 0.868 114.3 59.9 -52.2 -39.3 14.4 18.7 4.7 35 35 A S H 34 S+ 0 0 101 1,-0.2 4,-0.5 2,-0.2 -1,-0.3 0.820 108.6 44.6 -59.8 -31.2 13.9 16.1 7.4 36 36 A T H <> S+ 0 0 67 -3,-1.4 4,-1.0 2,-0.1 -2,-0.2 0.862 117.9 42.7 -80.9 -38.8 11.1 14.6 5.2 37 37 A V H >X S+ 0 0 5 -4,-2.1 4,-3.2 2,-0.2 3,-1.2 0.981 113.5 48.1 -71.0 -60.0 13.0 14.8 2.0 38 38 A H H 3X S+ 0 0 49 -4,-2.8 4,-1.0 1,-0.3 -1,-0.2 0.784 104.5 66.3 -51.8 -27.9 16.4 13.6 3.2 39 39 A K H 34 S+ 0 0 102 -4,-0.5 -1,-0.3 -5,-0.4 -2,-0.2 0.919 114.0 27.1 -61.2 -45.3 14.5 10.7 4.8 40 40 A D H X<>S+ 0 0 28 -3,-1.2 5,-2.9 -4,-1.0 3,-1.2 0.814 113.5 65.3 -86.0 -34.6 13.5 9.3 1.5 41 41 A L H 3<5S+ 0 0 2 -4,-3.2 -2,-0.2 1,-0.3 -3,-0.2 0.697 114.6 34.4 -61.1 -17.9 16.5 10.6 -0.4 42 42 A T T 3<5S+ 0 0 79 -4,-1.0 -1,-0.3 -5,-0.3 -2,-0.2 0.323 132.3 29.8-116.9 2.7 18.6 8.3 1.8 43 43 A E T <>5S+ 0 0 101 -3,-1.2 4,-1.6 -5,-0.1 -3,-0.2 0.613 131.3 18.3-122.3 -74.2 16.0 5.5 2.0 44 44 A R H >>S+ 0 0 83 2,-0.2 4,-3.3 3,-0.2 5,-0.5 0.944 121.5 58.8 -69.7 -49.8 13.7 5.1 -1.0 45 45 A L H > S+ 0 0 80 0, 0.0 4,-0.7 0, 0.0 -1,-0.1 0.877 86.1 51.6 -69.8 -39.5 21.5 3.4 -5.7 51 51 A D H >> S+ 0 0 130 1,-0.2 3,-1.3 2,-0.2 4,-0.7 0.941 110.2 47.3 -63.5 -49.3 23.3 5.3 -8.4 52 52 A L H 3> S+ 0 0 9 1,-0.3 4,-0.9 2,-0.2 3,-0.4 0.781 103.2 65.3 -63.6 -26.7 21.0 8.3 -8.3 53 53 A A H 3X S+ 0 0 14 -4,-1.0 4,-1.0 1,-0.2 -1,-0.3 0.760 93.1 61.7 -66.9 -24.8 21.3 8.3 -4.5 54 54 A N H X S+ 0 0 56 -4,-0.7 4,-1.4 -3,-0.4 3,-0.5 0.954 107.2 39.7 -51.9 -57.5 24.1 12.4 -6.7 56 56 A V H 3X S+ 0 0 4 -4,-0.9 4,-1.0 1,-0.2 -1,-0.2 0.780 114.2 56.8 -64.4 -26.6 22.5 13.9 -3.6 57 57 A K H 3X S+ 0 0 116 -4,-1.0 4,-1.5 2,-0.2 -1,-0.2 0.796 100.6 58.4 -74.7 -29.4 25.2 12.3 -1.5 58 58 A E H < S+ 0 0 80 -4,-0.5 3,-0.6 1,-0.2 -2,-0.2 0.956 116.0 29.3 -64.1 -52.4 33.2 21.4 3.8 66 66 A I T >X S+ 0 0 36 -4,-1.4 3,-2.1 1,-0.2 4,-1.6 0.477 95.3 98.9 -86.5 -3.2 31.8 25.0 3.9 67 67 A R H 3> S+ 0 0 131 1,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.866 71.1 67.1 -50.4 -39.8 29.7 24.0 6.9 68 68 A H H << S+ 0 0 158 -3,-0.6 -1,-0.3 -4,-0.5 4,-0.2 0.824 106.2 41.9 -51.6 -33.1 32.3 25.6 9.2 69 69 A L H X4 S+ 0 0 144 -3,-2.1 3,-1.3 1,-0.2 -1,-0.3 0.831 109.4 56.7 -83.4 -35.6 31.3 28.9 7.6 70 70 A R H >X S+ 0 0 104 -4,-1.6 3,-2.4 1,-0.3 4,-0.9 0.765 87.3 80.5 -66.9 -25.2 27.6 28.2 7.7 71 71 A G H 3X S+ 0 0 28 -4,-2.2 4,-1.9 1,-0.3 -1,-0.3 0.783 73.3 77.9 -52.3 -28.1 27.8 27.6 11.4 72 72 A G H <> S+ 0 0 48 -3,-1.3 4,-0.6 1,-0.2 -1,-0.3 0.813 97.3 44.2 -52.1 -32.1 27.8 31.4 11.8 73 73 A E H <> S+ 0 0 148 -3,-2.4 4,-1.6 -4,-0.2 3,-0.3 0.836 108.1 56.3 -81.7 -35.7 24.0 31.3 11.3 74 74 A A H X S+ 0 0 56 -4,-0.9 4,-1.0 1,-0.2 -2,-0.2 0.760 95.5 69.8 -66.9 -24.8 23.5 28.3 13.6 75 75 A T H >< S+ 0 0 78 -4,-1.9 3,-0.5 1,-0.2 4,-0.2 0.943 107.3 34.0 -58.1 -50.9 25.1 30.3 16.4 76 76 A K H >X S+ 0 0 140 -4,-0.6 3,-2.3 -3,-0.3 4,-0.8 0.811 105.5 72.6 -74.7 -31.0 22.2 32.7 16.6 77 77 A L H 3X S+ 0 0 76 -4,-1.6 4,-2.4 1,-0.3 3,-0.5 0.794 84.3 70.1 -53.8 -28.8 19.7 29.9 15.8 78 78 A K H << S+ 0 0 89 -4,-1.0 -1,-0.3 -3,-0.5 -2,-0.2 0.814 95.6 52.8 -59.4 -30.7 20.4 28.6 19.3 79 79 A Y H <4 S+ 0 0 174 -3,-2.3 -1,-0.3 -4,-0.2 -2,-0.2 0.804 113.1 42.5 -75.0 -30.4 18.6 31.6 20.7 80 80 A K H < S+ 0 0 163 -4,-0.8 -2,-0.2 -3,-0.5 -1,-0.2 0.741 110.1 69.3 -86.0 -26.2 15.5 30.9 18.5 81 81 A K S < S- 0 0 166 -4,-2.4 3,-0.1 -5,-0.2 -3,-0.0 -0.088 99.4 -71.7 -81.1-174.8 15.7 27.2 19.1 82 82 A D S S- 0 0 137 1,-0.1 -1,-0.2 -2,-0.0 0, 0.0 0.159 78.4 -45.5 -65.0-170.0 14.9 25.3 22.4 83 83 A E - 0 0 138 1,-0.1 2,-0.2 -4,-0.0 -1,-0.1 0.001 49.2-140.3 -54.6 166.4 17.1 25.4 25.5 84 84 A I - 0 0 99 -3,-0.1 2,-0.1 -5,-0.0 -1,-0.1 -0.637 23.8-179.4-135.8 77.2 20.9 24.9 25.1 85 85 A L - 0 0 127 -2,-0.2 2,-1.2 1,-0.1 3,-0.1 -0.385 39.3-102.2 -75.6 154.8 22.3 22.7 27.9 86 86 A E S S+ 0 0 178 1,-0.2 -1,-0.1 -2,-0.1 -2,-0.0 -0.648 83.5 106.7 -81.2 95.8 26.0 21.9 28.1 87 87 A G + 0 0 62 -2,-1.2 -1,-0.2 2,-0.0 -2,-0.1 0.135 38.0 160.4-158.0 25.4 26.2 18.3 26.8 88 88 A E - 0 0 150 -3,-0.1 3,-0.1 1,-0.1 -2,-0.0 -0.040 43.1-100.9 -51.7 156.8 27.7 18.5 23.3 89 89 A P - 0 0 96 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 0.057 46.5 -77.0 -69.7-175.2 29.2 15.2 21.9 90 90 A V + 0 0 149 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.804 62.2 157.3 -93.7 116.4 32.9 14.3 21.7 91 91 A Q - 0 0 149 -2,-0.7 2,-0.2 -3,-0.1 -3,-0.0 -0.788 25.2-142.3-130.5 173.7 34.8 16.1 18.9 92 92 A Q 0 0 171 -2,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.723 360.0 360.0-129.5 179.4 38.4 17.1 18.1 93 93 A S 0 0 159 -2,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.855 360.0 360.0-125.8 360.0 40.3 19.9 16.5