==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 28-JUL-10 2L1D . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR B.CHRISTEN,F.F.DAMBERGER,D.R.PEREZ,S.HORNEMANN,K.WUTHRICH . 114 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7275.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 64.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 12.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 39.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 119 A G 0 0 84 0, 0.0 2,-0.3 0, 0.0 10,-0.1 0.000 360.0 360.0 360.0 73.0 -9.6 -8.9 -8.2 2 120 A S - 0 0 83 8,-0.1 3,-0.2 9,-0.0 8,-0.2 -0.887 360.0 -28.2-159.9 130.4 -10.5 -11.9 -6.1 3 121 A V - 0 0 81 6,-1.1 2,-2.3 -2,-0.3 8,-0.1 0.811 64.5-153.8 35.8 65.8 -8.7 -14.1 -3.5 4 122 A V - 0 0 45 6,-0.9 2,-0.4 2,-0.1 -1,-0.2 -0.434 65.1 -44.9 -75.1 74.1 -5.3 -13.4 -5.0 5 123 A G S S- 0 0 60 -2,-2.3 2,-1.1 -3,-0.2 4,-0.2 -0.834 130.1 -8.9 97.7-142.7 -3.8 -16.7 -3.6 6 124 A G S S+ 0 0 84 -2,-0.4 2,-0.3 2,-0.1 -1,-0.1 -0.358 99.8 139.3 -79.7 48.1 -4.6 -17.5 0.0 7 125 A L - 0 0 11 -2,-1.1 2,-0.6 3,-0.1 -2,-0.1 -0.717 68.6-114.7 -85.0 156.5 -6.2 -14.1 0.4 8 126 A G S S- 0 0 46 -2,-0.3 -2,-0.1 1,-0.1 -1,-0.0 -0.030 78.8 -66.1 -79.9 28.2 -9.4 -13.7 2.3 9 127 A G S S+ 0 0 28 -2,-0.6 -6,-1.1 1,-0.3 -1,-0.1 0.041 88.4 162.6 111.0 -17.2 -11.2 -12.6 -0.9 10 128 A Y - 0 0 28 -8,-0.2 -6,-0.9 -7,-0.1 -1,-0.3 0.165 32.3-132.7 -45.5 140.7 -9.1 -9.4 -1.2 11 129 A M E -A 45 0A 31 34,-2.4 34,-1.3 -9,-0.2 2,-0.4 -0.394 14.9-125.8 -86.7 167.2 -8.9 -7.5 -4.5 12 130 A L E -A 44 0A 45 32,-0.2 32,-0.2 -2,-0.1 3,-0.1 -0.988 25.8-120.4-128.1 119.5 -5.7 -6.2 -6.1 13 131 A G - 0 0 1 30,-3.5 2,-0.1 -2,-0.4 3,-0.1 -0.100 32.0 -92.8 -59.3 153.2 -5.3 -2.5 -7.1 14 132 A S - 0 0 80 1,-0.1 -1,-0.1 28,-0.1 29,-0.1 -0.446 60.1 -82.9 -63.4 141.8 -4.6 -1.2 -10.5 15 133 A A - 0 0 68 -2,-0.1 27,-0.2 27,-0.1 -1,-0.1 -0.277 54.4-169.6 -54.7 115.3 -0.9 -0.6 -11.1 16 134 A M - 0 0 40 25,-3.2 2,-0.3 -2,-0.1 -1,-0.1 -0.226 21.3-106.1 -88.9-174.3 0.1 2.8 -9.7 17 135 A S - 0 0 97 -2,-0.1 -1,-0.1 23,-0.0 20,-0.0 -0.841 44.6 -78.4-118.8 158.3 3.4 4.6 -10.2 18 136 A R - 0 0 141 -2,-0.3 19,-0.1 1,-0.1 23,-0.1 -0.407 52.8-140.0 -58.8 112.1 6.3 5.1 -7.8 19 137 A P - 0 0 14 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.056 10.7-115.7 -62.4 174.9 5.4 7.9 -5.3 20 138 A M + 0 0 90 71,-0.0 2,-0.3 2,-0.0 9,-0.0 -0.978 40.6 165.9-114.5 125.0 7.6 10.6 -3.9 21 139 A I - 0 0 27 -2,-0.5 12,-0.1 8,-0.2 11,-0.1 -0.984 19.9-178.2-144.5 133.7 8.1 10.3 -0.1 22 140 A H > - 0 0 104 -2,-0.3 2,-2.2 10,-0.1 3,-1.1 0.550 16.3-162.8-119.2 -17.7 10.8 12.2 1.9 23 141 A F T 3 - 0 0 49 1,-0.3 3,-0.1 5,-0.2 -1,-0.0 -0.039 53.1 -82.9 66.0 -33.0 10.1 10.8 5.5 24 142 A G T 3 S+ 0 0 71 -2,-2.2 2,-0.3 1,-0.4 -1,-0.3 0.593 107.2 89.7 101.2 16.8 12.0 13.5 7.4 25 143 A N S <> S- 0 0 64 -3,-1.1 4,-2.3 1,-0.1 -1,-0.4 -0.977 70.2-140.5-130.0 142.2 15.6 12.1 7.2 26 144 A D H > S+ 0 0 140 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.876 106.0 51.2 -66.3 -36.6 17.8 13.1 4.2 27 145 A W H > S+ 0 0 125 2,-0.2 4,-2.7 3,-0.2 -1,-0.2 0.860 108.8 51.4 -65.3 -38.7 19.2 9.5 4.0 28 146 A E H > S+ 0 0 13 2,-0.2 4,-3.1 3,-0.2 5,-0.3 0.967 111.5 46.9 -62.1 -54.8 15.6 8.1 4.0 29 147 A D H X S+ 0 0 33 -4,-2.3 4,-2.8 -7,-0.7 -2,-0.2 0.938 118.3 41.9 -45.7 -59.2 14.6 10.5 1.1 30 148 A R H X S+ 0 0 150 -4,-2.5 4,-3.0 2,-0.2 -1,-0.2 0.857 115.9 48.5 -60.4 -43.8 17.8 9.6 -0.9 31 149 A Y H X S+ 0 0 63 -4,-2.7 4,-1.3 2,-0.2 -2,-0.2 0.973 112.4 47.7 -66.3 -51.1 17.6 5.9 -0.1 32 150 A Y H >< S+ 0 0 0 -4,-3.1 3,-0.8 1,-0.2 4,-0.3 0.924 113.9 50.5 -49.0 -51.5 13.9 5.7 -1.1 33 151 A R H >< S+ 0 0 141 -4,-2.8 3,-1.9 -5,-0.3 4,-0.3 0.939 105.4 53.2 -51.4 -57.9 14.9 7.7 -4.2 34 152 A E H 3< S+ 0 0 134 -4,-3.0 -1,-0.2 1,-0.3 -2,-0.2 0.697 125.4 27.5 -61.6 -16.9 17.8 5.4 -5.2 35 153 A N T XX S+ 0 0 28 -4,-1.3 3,-2.6 -3,-0.8 4,-0.7 0.155 83.4 121.8-122.9 22.0 15.4 2.4 -5.0 36 154 A M G X4 S+ 0 0 35 -3,-1.9 3,-0.7 1,-0.3 -2,-0.1 0.829 77.8 48.7 -59.2 -37.1 12.1 4.2 -5.8 37 155 A Y G 34 S+ 0 0 127 -4,-0.3 -1,-0.3 1,-0.2 -4,-0.1 0.434 101.2 66.5 -79.6 -6.6 11.4 1.9 -8.9 38 156 A R G <4 S+ 0 0 192 -3,-2.6 -1,-0.2 2,-0.1 -2,-0.2 0.641 82.8 94.2 -86.4 -21.4 12.1 -1.2 -6.8 39 157 A Y S << S- 0 0 21 -4,-0.7 -21,-0.1 -3,-0.7 45,-0.0 -0.339 90.3 -88.1 -69.2 158.2 9.0 -0.7 -4.6 40 158 A P - 0 0 12 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.277 26.5-158.1 -64.2 153.6 5.7 -2.3 -5.4 41 159 A N S S+ 0 0 78 -3,-0.1 -25,-3.2 -23,-0.1 2,-0.3 0.474 72.1 52.4-112.3 -13.1 3.3 -0.5 -7.7 42 160 A Q - 0 0 71 -27,-0.2 2,-0.3 23,-0.0 -27,-0.1 -0.847 61.4-162.9-122.8 166.4 -0.0 -2.3 -6.6 43 161 A V - 0 0 0 -2,-0.3 -30,-3.5 -29,-0.1 2,-0.4 -0.923 17.3-123.7-141.8 160.6 -1.7 -2.9 -3.2 44 162 A Y E +A 12 0A 36 17,-0.5 21,-0.4 -2,-0.3 -32,-0.2 -0.940 32.3 164.1-118.1 137.8 -4.5 -5.3 -2.0 45 163 A Y E -A 11 0A 25 -34,-1.3 -34,-2.4 -2,-0.4 13,-0.1 -0.767 30.1-124.4-139.9 169.0 -7.8 -4.2 -0.3 46 164 A R - 0 0 130 -36,-0.2 2,-0.6 -2,-0.2 15,-0.1 -0.786 50.9 -76.9-108.4 168.0 -11.3 -5.6 0.6 47 165 A P - 0 0 72 0, 0.0 2,-0.1 0, 0.0 5,-0.1 -0.519 46.9-133.6 -70.4 112.2 -14.6 -4.0 -0.5 48 166 A V + 0 0 10 -2,-0.6 2,-0.2 4,-0.1 6,-0.0 -0.398 38.0 162.3 -54.4 139.1 -15.3 -1.0 1.7 49 167 A D > - 0 0 84 -2,-0.1 3,-1.0 58,-0.0 59,-0.1 -0.815 57.5 -71.1-146.1-173.6 -18.9 -1.0 3.0 50 168 A Q T 3 S+ 0 0 159 1,-0.3 -2,-0.1 -2,-0.2 58,-0.0 0.574 133.2 46.2 -64.6 -15.1 -20.9 0.7 5.8 51 169 A G T 3 S+ 0 0 61 2,-0.0 -1,-0.3 0, 0.0 2,-0.1 0.503 102.8 78.4-103.9 -13.1 -19.1 -1.4 8.4 52 170 A S < - 0 0 34 -3,-1.0 2,-0.3 -5,-0.1 3,-0.1 -0.359 61.1-172.7 -75.6 175.0 -15.7 -0.8 6.9 53 171 A N >> - 0 0 64 -2,-0.1 4,-2.1 1,-0.1 3,-1.9 -0.955 40.3-102.3-161.2 164.7 -13.7 2.4 7.4 54 172 A Q H 3>>S+ 0 0 69 1,-0.3 4,-2.7 -2,-0.3 5,-0.8 0.927 120.8 58.9 -60.5 -43.3 -10.5 3.9 6.1 55 173 A N H 345S+ 0 0 97 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.370 115.5 36.3 -69.4 2.3 -8.6 3.0 9.3 56 174 A N H <>5S+ 0 0 95 -3,-1.9 4,-1.2 3,-0.1 -1,-0.2 0.513 120.0 47.5-117.1 -21.4 -9.6 -0.7 8.6 57 175 A F H X5S+ 0 0 7 -4,-2.1 4,-2.3 -3,-0.2 -2,-0.2 0.956 121.6 32.6 -83.9 -56.0 -9.2 -0.6 4.8 58 176 A V H X5S+ 0 0 11 -4,-2.7 4,-2.6 2,-0.2 5,-0.2 0.925 120.4 53.7 -65.4 -47.7 -5.8 1.2 4.5 59 177 A H H >X S+ 0 0 3 -4,-2.9 3,-1.3 -21,-0.4 4,-0.7 0.950 114.7 44.4 -58.2 -49.0 0.2 -6.0 0.7 66 184 A I H >X>S+ 0 0 23 -4,-1.9 4,-2.9 -5,-0.3 5,-1.7 0.957 110.1 56.8 -59.8 -43.1 3.2 -6.6 2.9 67 185 A K H 3<5S+ 0 0 77 -4,-3.3 -1,-0.3 1,-0.3 -2,-0.2 0.666 114.9 38.4 -65.6 -13.6 1.9 -10.1 3.5 68 186 A Q H <<5S+ 0 0 30 -3,-1.3 -1,-0.3 -4,-0.9 -2,-0.2 0.354 127.3 32.5-114.0 4.3 2.0 -10.7 -0.3 69 187 A H H <<5S+ 0 0 46 -3,-1.5 -2,-0.2 -4,-0.7 -3,-0.2 0.434 135.4 21.9-132.6 -8.8 5.2 -8.8 -1.2 70 188 A T T >X>S+ 0 0 19 -4,-2.9 4,-2.8 -5,-0.3 3,-1.9 0.627 130.2 39.0-122.8 -57.5 7.2 -9.4 2.0 71 189 A V T 34>S+ 0 0 40 -3,-1.9 5,-1.9 3,-0.1 4,-1.1 0.637 109.2 55.6-141.8 -46.6 8.8 -12.9 -1.1 74 192 A T T 3<5S+ 0 0 48 -4,-2.8 -3,-0.2 1,-0.3 4,-0.1 0.946 109.9 54.2 -58.2 -41.9 11.4 -12.8 1.8 75 193 A T T 34> - 0 0 61 1,-0.1 4,-2.0 -2,-0.0 3,-0.7 -0.561 21.7-110.5 -86.5 159.7 15.3 -5.2 5.7 82 200 A E H 3> S+ 0 0 166 1,-0.3 4,-2.9 2,-0.2 5,-0.2 0.860 121.7 61.5 -61.8 -30.8 13.0 -3.6 8.2 83 201 A T H 3> S+ 0 0 57 2,-0.2 4,-1.1 1,-0.2 -1,-0.3 0.893 104.6 47.6 -53.2 -47.6 14.3 -0.3 6.7 84 202 A D H <> S+ 0 0 22 -3,-0.7 4,-2.2 2,-0.2 3,-0.4 0.921 113.4 46.4 -63.5 -45.6 12.8 -1.3 3.3 85 203 A V H X S+ 0 0 21 -4,-2.0 4,-2.3 1,-0.3 -2,-0.2 0.882 105.9 59.3 -73.0 -31.4 9.5 -2.3 4.8 86 204 A K H < S+ 0 0 100 -4,-2.9 -1,-0.3 2,-0.2 -2,-0.2 0.817 108.3 47.3 -58.2 -34.1 9.4 1.0 6.8 87 205 A M H >X S+ 0 0 0 -4,-1.1 3,-1.9 -3,-0.4 4,-1.6 0.912 109.3 52.3 -72.1 -43.3 9.6 2.6 3.4 88 206 A M H 3X S+ 0 0 1 -4,-2.2 4,-2.6 1,-0.3 5,-0.5 0.821 94.9 70.4 -64.2 -27.5 6.8 0.4 2.1 89 207 A E H 3< S+ 0 0 104 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.1 0.565 106.8 39.7 -62.9 -8.4 4.6 1.4 5.1 90 208 A R H <> S+ 0 0 89 -3,-1.9 4,-2.7 -5,-0.1 5,-0.3 0.791 115.3 47.6-105.5 -50.6 4.4 4.8 3.4 91 209 A V H X S+ 0 0 0 -4,-1.6 4,-2.3 2,-0.2 5,-0.2 0.932 116.8 43.4 -55.9 -50.9 4.0 3.9 -0.3 92 210 A V H X S+ 0 0 0 -4,-2.6 4,-3.0 2,-0.2 5,-0.3 0.890 112.3 55.0 -68.6 -37.5 1.3 1.3 0.4 93 211 A E H > S+ 0 0 94 -5,-0.5 4,-2.7 2,-0.2 -2,-0.2 0.982 114.2 38.1 -56.0 -58.2 -0.5 3.6 2.8 94 212 A Q H X S+ 0 0 68 -4,-2.7 4,-2.1 1,-0.2 -1,-0.2 0.801 116.7 52.9 -70.8 -29.2 -0.8 6.4 0.2 95 213 A M H X S+ 0 0 0 -4,-2.3 4,-2.3 -5,-0.3 -1,-0.2 0.948 112.9 42.7 -64.7 -49.1 -1.4 4.0 -2.6 96 214 A a H X S+ 0 0 0 -4,-3.0 4,-2.4 2,-0.2 -2,-0.2 0.832 110.7 57.0 -75.6 -26.7 -4.3 2.3 -0.7 97 215 A V H X S+ 0 0 34 -4,-2.7 4,-2.6 -5,-0.3 -1,-0.2 0.958 109.4 46.5 -52.5 -53.4 -5.5 5.8 0.4 98 216 A T H X S+ 0 0 57 -4,-2.1 4,-0.6 1,-0.2 -2,-0.2 0.891 113.4 47.5 -63.7 -39.1 -5.7 6.6 -3.4 99 217 A Q H X S+ 0 0 11 -4,-2.3 4,-2.9 1,-0.2 3,-0.4 0.860 112.6 50.6 -68.9 -33.8 -7.5 3.2 -4.1 100 218 A Y H X>S+ 0 0 15 -4,-2.4 4,-3.0 2,-0.2 5,-0.6 0.899 101.1 60.3 -68.2 -42.5 -9.9 4.0 -1.1 101 219 A Q H <5S+ 0 0 128 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.709 116.1 36.6 -64.9 -16.4 -10.7 7.5 -2.4 102 220 A K H X5S+ 0 0 116 -4,-0.6 4,-0.7 -3,-0.4 -2,-0.2 0.872 122.5 40.8 -87.8 -61.5 -12.0 5.6 -5.6 103 221 A E H >X5S+ 0 0 59 -4,-2.9 4,-2.3 2,-0.2 3,-0.8 0.878 113.9 51.7 -64.1 -42.4 -13.6 2.5 -3.9 104 222 A S H 3X5S+ 0 0 5 -4,-3.0 4,-2.5 1,-0.3 5,-0.3 0.960 109.1 50.4 -59.9 -48.7 -15.1 4.3 -1.0 105 223 A Q H 3>< S+ 0 0 59 -4,-2.5 3,-1.6 1,-0.1 -1,-0.2 0.851 70.4 174.3 -55.1 -52.5 -21.3 5.1 -0.7 109 227 A D T 3< S+ 0 0 142 -4,-0.6 -1,-0.1 1,-0.3 -4,-0.1 0.613 89.5 0.5 45.9 22.4 -22.8 6.2 -4.1 110 228 A G T > S+ 0 0 46 -5,-0.0 3,-0.9 0, 0.0 -1,-0.3 -0.117 122.9 70.6 163.1 -54.6 -24.6 8.8 -2.0 111 229 A R T < S+ 0 0 141 -3,-1.6 3,-0.2 1,-0.2 -2,-0.1 0.284 73.4 99.0 -74.3 15.9 -23.6 8.3 1.7 112 230 A R T 3 S- 0 0 150 1,-0.3 -1,-0.2 -7,-0.1 2,-0.1 0.581 108.0 -47.3 -77.1 -21.0 -20.2 9.8 0.7 113 231 A S < 0 0 81 -3,-0.9 -1,-0.3 -5,-0.1 -2,-0.0 -0.184 360.0 360.0 144.6 125.2 -21.0 13.3 1.9 114 232 A S 0 0 166 -3,-0.2 -3,-0.1 -2,-0.1 -2,-0.0 0.239 360.0 360.0-144.2 360.0 -24.2 15.2 1.2