==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-JAN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 28-JUL-10 2L1H . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR B.CHRISTEN,F.F.DAMBERGER,D.R.PEREZ,S.HORNEMANN,K.WUTHRICH . 114 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7851.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 78 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 46.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 119 A G 0 0 132 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 130.4 2.9 -18.5 -9.3 2 120 A S - 0 0 79 2,-0.0 2,-0.8 3,-0.0 70,-0.0 -0.971 360.0-105.8-138.8 152.9 1.6 -18.9 -5.7 3 121 A V - 0 0 147 -2,-0.3 2,-1.1 1,-0.1 3,-0.4 -0.663 30.9-163.0 -70.5 104.4 -1.4 -20.0 -3.7 4 122 A V > + 0 0 68 -2,-0.8 4,-1.4 1,-0.2 3,-0.4 -0.420 45.7 131.2 -90.5 55.8 -2.7 -16.6 -2.6 5 123 A G T 4 + 0 0 52 -2,-1.1 -1,-0.2 1,-0.2 4,-0.1 0.864 54.5 69.9 -78.7 -35.0 -4.9 -18.3 0.1 6 124 A G T 4 S+ 0 0 65 -3,-0.4 -1,-0.2 1,-0.2 3,-0.1 0.630 109.4 37.3 -63.9 -17.3 -3.8 -16.1 3.0 7 125 A L T 4 S+ 0 0 21 -3,-0.4 2,-1.6 1,-0.1 -2,-0.2 0.835 79.0 158.1 -85.2 -72.3 -5.8 -13.2 1.4 8 126 A G S < S+ 0 0 65 -4,-1.4 -2,-0.1 1,-0.1 -1,-0.1 -0.494 71.9 30.0 85.9 -64.3 -8.6 -15.4 0.1 9 127 A G S S+ 0 0 53 -2,-1.6 2,-0.2 -4,-0.1 -1,-0.1 -0.298 91.5 116.8-126.5 40.8 -11.3 -12.6 -0.3 10 128 A Y - 0 0 53 36,-0.2 2,-0.3 2,-0.0 36,-0.3 -0.500 54.8-131.8 -97.4 173.5 -9.3 -9.5 -1.1 11 129 A M E -A 45 0A 67 34,-2.1 34,-2.6 -2,-0.2 2,-0.6 -0.967 9.9-144.8-127.8 145.3 -9.3 -7.3 -4.3 12 130 A L E -A 44 0A 85 -2,-0.3 32,-0.2 32,-0.2 34,-0.0 -0.961 21.3-148.5-120.2 110.3 -6.2 -6.1 -6.1 13 131 A G - 0 0 9 30,-1.7 86,-0.0 -2,-0.6 -1,-0.0 -0.032 27.9 -75.7 -75.3 179.7 -6.5 -2.6 -7.6 14 132 A S - 0 0 99 1,-0.1 29,-0.3 28,-0.1 -1,-0.2 -0.262 52.7-101.3 -62.8 159.8 -5.0 -1.1 -10.7 15 133 A A - 0 0 56 27,-0.1 2,-0.3 1,-0.0 27,-0.2 -0.442 44.6-166.6 -72.4 159.3 -1.3 -0.1 -10.7 16 134 A M - 0 0 53 25,-1.5 2,-0.1 -2,-0.1 79,-0.0 -0.952 28.0 -81.0-145.1 164.3 -0.6 3.7 -10.3 17 135 A S - 0 0 112 -2,-0.3 24,-0.0 1,-0.1 0, 0.0 -0.459 65.3 -86.0 -63.8 137.4 2.1 6.3 -10.5 18 136 A R - 0 0 82 -2,-0.1 -1,-0.1 1,-0.1 2,-0.1 -0.138 40.1-121.4 -44.4 126.4 4.5 6.4 -7.5 19 137 A P - 0 0 24 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.483 18.8-134.2 -53.6 142.3 3.4 8.5 -4.6 20 138 A M - 0 0 91 -2,-0.1 2,-0.6 74,-0.1 9,-0.0 -0.954 23.7-155.9 -93.8 124.0 6.0 11.2 -3.8 21 139 A I - 0 0 13 -2,-0.5 2,-1.7 8,-0.1 3,-0.1 -0.934 12.3-150.1-109.1 119.3 6.3 11.0 0.0 22 140 A H + 0 0 164 -2,-0.6 4,-0.1 1,-0.2 -2,-0.0 -0.599 22.6 176.2 -89.0 73.1 7.5 14.1 1.8 23 141 A F - 0 0 41 -2,-1.7 -1,-0.2 2,-0.2 3,-0.1 0.633 43.6-120.8 -53.6 -22.3 9.2 12.2 4.6 24 142 A G S S+ 0 0 75 1,-0.4 2,-0.4 -3,-0.1 -1,-0.1 -0.011 89.0 94.4 92.4 -23.3 10.5 15.4 6.1 25 143 A N > - 0 0 71 1,-0.1 4,-0.9 2,-0.0 -1,-0.4 -0.781 68.7-148.3 -89.0 144.4 14.1 14.2 5.8 26 144 A D H > S+ 0 0 130 -2,-0.4 4,-1.7 2,-0.2 5,-0.2 0.917 97.4 48.3 -67.6 -49.0 15.9 15.2 2.6 27 145 A W H > S+ 0 0 137 1,-0.2 4,-2.6 2,-0.2 -1,-0.1 0.869 108.4 52.9 -70.6 -37.9 18.0 12.0 2.4 28 146 A E H > S+ 0 0 23 2,-0.2 4,-2.9 1,-0.2 -1,-0.2 0.891 106.5 54.6 -60.1 -43.9 15.0 9.7 2.9 29 147 A D H X S+ 0 0 32 -4,-0.9 4,-2.6 1,-0.2 -2,-0.2 0.955 114.6 38.2 -58.6 -54.4 13.1 11.3 0.0 30 148 A R H X S+ 0 0 162 -4,-1.7 4,-3.2 2,-0.2 -1,-0.2 0.867 112.7 58.4 -62.8 -42.5 15.9 10.8 -2.4 31 149 A Y H X S+ 0 0 89 -4,-2.6 4,-1.4 2,-0.2 -2,-0.2 0.948 110.9 42.3 -58.9 -48.9 16.7 7.3 -1.0 32 150 A Y H >X S+ 0 0 0 -4,-2.9 3,-0.9 2,-0.2 4,-0.7 0.983 115.9 50.2 -52.0 -62.1 13.1 6.2 -1.8 33 151 A R H >< S+ 0 0 138 -4,-2.6 3,-1.0 1,-0.2 4,-0.3 0.840 105.3 56.7 -45.7 -49.4 13.3 8.0 -5.2 34 152 A E H 3< S+ 0 0 129 -4,-3.2 -1,-0.2 1,-0.2 -2,-0.2 0.873 127.2 17.4 -54.9 -43.8 16.6 6.3 -6.2 35 153 A N H X< S+ 0 0 30 -4,-1.4 3,-2.7 -3,-0.9 -1,-0.2 0.130 86.3 130.2-115.1 19.3 15.3 2.7 -5.7 36 154 A M G X< + 0 0 30 -3,-1.0 3,-1.7 -4,-0.7 -1,-0.1 0.701 62.2 66.6 -58.9 -28.5 11.5 3.5 -5.8 37 155 A Y G 3 S+ 0 0 168 1,-0.3 -1,-0.3 -4,-0.3 4,-0.1 0.669 84.6 74.0 -66.7 -16.3 10.6 0.9 -8.4 38 156 A R G < S+ 0 0 91 -3,-2.7 -1,-0.3 2,-0.1 -2,-0.2 0.547 89.1 72.0 -72.0 -9.0 11.6 -1.8 -5.8 39 157 A Y S < S- 0 0 4 -3,-1.7 -21,-0.1 -4,-0.2 45,-0.0 -0.794 98.1 -96.2-103.8 152.1 8.3 -1.0 -4.0 40 158 A P - 0 0 24 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.066 11.6-146.7 -69.2 166.9 4.9 -2.0 -5.6 41 159 A N S S+ 0 0 53 -23,-0.1 -25,-1.5 -4,-0.1 2,-0.2 0.398 82.9 47.5-103.6 -5.3 2.6 0.0 -7.8 42 160 A Q - 0 0 76 -27,-0.2 2,-0.3 23,-0.0 -27,-0.1 -0.806 64.1-154.1-132.3 173.6 -0.6 -1.7 -6.5 43 161 A V - 0 0 0 -29,-0.3 -30,-1.7 -2,-0.2 2,-0.5 -0.942 20.1-121.0-148.1 156.9 -2.2 -2.7 -3.1 44 162 A Y E +A 12 0A 61 17,-0.3 2,-0.4 -2,-0.3 21,-0.3 -0.937 33.8 176.6-108.6 121.1 -4.7 -5.4 -2.0 45 163 A Y E -A 11 0A 19 -34,-2.6 -34,-2.1 -2,-0.5 3,-0.1 -0.970 29.1-128.7-121.7 138.1 -7.9 -4.1 -0.3 46 164 A R - 0 0 85 -2,-0.4 -36,-0.2 -36,-0.3 15,-0.0 -0.538 55.7 -79.3 -64.2 157.0 -11.0 -6.0 0.9 47 165 A P > - 0 0 50 0, 0.0 3,-1.3 0, 0.0 -1,-0.1 -0.335 35.6-130.3 -58.5 137.1 -14.2 -4.5 -0.5 48 166 A V G > S+ 0 0 18 1,-0.3 3,-1.1 52,-0.1 -2,-0.0 0.691 93.9 90.5 -65.0 -18.8 -15.1 -1.3 1.4 49 167 A D G 3 S+ 0 0 100 1,-0.3 -1,-0.3 3,-0.0 2,-0.2 0.745 96.3 32.6 -52.6 -31.2 -18.7 -2.7 1.7 50 168 A Q G < S+ 0 0 167 -3,-1.3 -1,-0.3 2,-0.0 2,-0.3 -0.595 101.0 92.9-129.0 72.5 -17.7 -4.5 5.0 51 169 A Y < - 0 0 42 -3,-1.1 2,-0.3 -2,-0.2 3,-0.1 -0.869 51.6-154.6-133.5 175.3 -15.2 -2.1 6.7 52 170 A S - 0 0 101 -2,-0.3 5,-0.2 1,-0.1 4,-0.2 -0.929 55.6 -1.3-149.4 146.2 -15.4 0.7 9.2 53 171 A N - 0 0 111 -2,-0.3 -1,-0.1 3,-0.1 0, 0.0 -0.003 68.6-108.1 72.6-178.6 -13.1 3.7 9.7 54 172 A Q S > S+ 0 0 76 3,-0.1 4,-3.2 2,-0.1 5,-0.2 0.748 103.6 59.7-112.0 -43.3 -9.8 4.5 7.9 55 173 A N H > S+ 0 0 122 1,-0.2 4,-2.5 2,-0.2 -2,-0.1 0.902 108.9 43.6 -58.5 -49.8 -7.0 3.8 10.4 56 174 A N H > S+ 0 0 101 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.824 115.7 49.8 -64.2 -35.1 -7.8 0.1 10.9 57 175 A F H > S+ 0 0 1 2,-0.2 4,-2.6 -5,-0.2 -2,-0.2 0.963 109.5 51.1 -65.0 -52.2 -8.3 -0.3 7.1 58 176 A V H X S+ 0 0 14 -4,-3.2 4,-2.3 1,-0.2 -2,-0.2 0.899 110.3 52.3 -49.7 -47.4 -5.0 1.4 6.5 59 177 A H H X S+ 0 0 123 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.935 112.5 41.0 -53.0 -61.4 -3.4 -1.0 9.0 60 178 A D H < S+ 0 0 49 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.795 112.0 55.8 -70.2 -27.0 -4.7 -4.2 7.4 61 179 A a H >X S+ 0 0 0 -4,-2.6 4,-2.9 2,-0.2 3,-1.4 0.970 112.4 42.9 -64.8 -49.7 -4.0 -3.0 3.8 62 180 A V H 3X>S+ 0 0 16 -4,-2.3 4,-2.6 1,-0.3 5,-0.6 0.968 110.5 56.9 -54.1 -56.9 -0.4 -2.4 4.7 63 181 A N H 3<5S+ 0 0 82 -4,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.388 116.0 36.7 -60.3 -1.4 -0.3 -5.8 6.6 64 182 A I H <>5S+ 0 0 12 -3,-1.4 4,-2.8 -20,-0.1 -1,-0.2 0.656 118.0 45.7-118.7 -45.8 -1.4 -7.6 3.4 65 183 A T H X5S+ 0 0 5 -4,-2.9 4,-3.2 -21,-0.3 5,-0.2 0.981 120.7 40.7 -59.9 -56.4 0.5 -5.7 0.7 66 184 A I H X5S+ 0 0 23 -4,-2.6 4,-2.9 -5,-0.3 5,-0.2 0.928 114.0 55.4 -57.5 -45.1 3.7 -5.7 2.7 67 185 A K H >X S+ 0 0 28 -4,-2.8 4,-3.3 2,-0.2 3,-1.8 0.967 117.1 49.3 -61.6 -54.2 2.7 -10.4 0.0 69 187 A H H 3< S+ 0 0 46 -4,-3.2 -2,-0.2 1,-0.3 -1,-0.2 0.837 114.6 45.9 -60.2 -32.8 5.5 -8.2 -1.3 70 188 A T H 3< S+ 0 0 39 -4,-2.9 4,-0.3 -5,-0.2 -1,-0.3 0.480 122.3 36.9 -86.4 -5.1 7.9 -9.4 1.5 71 189 A V H << S+ 0 0 82 -3,-1.8 4,-0.3 -4,-0.5 -2,-0.2 0.738 104.3 63.6-114.0 -38.8 6.9 -13.2 0.9 72 190 A T S < S+ 0 0 61 -4,-3.3 -3,-0.1 1,-0.2 -2,-0.1 0.529 119.6 31.7 -66.0 -4.3 6.4 -13.4 -2.9 73 191 A T S >> S+ 0 0 17 -5,-0.3 3,-2.5 -4,-0.2 4,-2.5 0.666 110.9 60.4-123.8 -46.9 10.2 -12.5 -3.0 74 192 A T T 34 S+ 0 0 75 -4,-0.3 -2,-0.2 1,-0.3 -3,-0.1 0.252 100.7 61.4 -73.8 14.7 11.4 -14.2 0.2 75 193 A T T 34 S+ 0 0 98 -4,-0.3 -1,-0.3 2,-0.0 -3,-0.1 0.294 114.8 32.7-107.4 0.9 10.1 -17.4 -1.5 76 194 A K T <4 S- 0 0 158 -3,-2.5 -2,-0.2 -5,-0.1 -3,-0.1 0.702 135.6 -61.2-121.6 -51.9 12.6 -16.9 -4.3 77 195 A G S < S+ 0 0 68 -4,-2.5 2,-0.3 1,-0.0 -3,-0.2 0.189 90.4 116.6 154.0 55.4 15.8 -15.2 -2.9 78 196 A E - 0 0 68 -5,-0.5 2,-0.3 -7,-0.1 -2,-0.1 -0.930 32.4-175.5-136.3 162.3 14.9 -11.8 -1.3 79 197 A N - 0 0 115 -2,-0.3 2,-0.5 2,-0.0 -8,-0.1 -0.951 20.6-131.7-149.7 160.1 14.9 -10.1 2.1 80 198 A F - 0 0 23 -2,-0.3 2,-0.1 -10,-0.1 -2,-0.0 -0.945 12.1-149.7-127.0 106.7 13.8 -6.7 3.3 81 199 A T >> - 0 0 80 -2,-0.5 4,-1.5 1,-0.1 3,-1.1 -0.441 35.1-107.1 -55.7 142.7 16.0 -4.5 5.5 82 200 A E H 3> S+ 0 0 142 1,-0.3 4,-2.4 2,-0.2 5,-0.1 0.758 118.3 60.2 -52.5 -34.3 14.0 -2.3 7.9 83 201 A T H 3> S+ 0 0 50 2,-0.2 4,-2.3 1,-0.2 -1,-0.3 0.903 103.8 50.4 -65.3 -41.1 14.8 0.8 5.9 84 202 A D H <> S+ 0 0 10 -3,-1.1 4,-3.0 1,-0.2 -1,-0.2 0.928 110.6 51.4 -57.1 -47.3 13.1 -0.7 2.8 85 203 A V H X S+ 0 0 39 -4,-1.5 4,-2.8 1,-0.2 -2,-0.2 0.876 108.3 50.3 -62.9 -40.3 10.1 -1.5 5.1 86 204 A K H X S+ 0 0 103 -4,-2.4 4,-1.7 2,-0.2 -1,-0.2 0.948 115.2 42.9 -61.3 -49.8 10.0 2.2 6.4 87 205 A M H >X S+ 0 0 1 -4,-2.3 4,-2.2 1,-0.2 3,-0.5 0.976 117.1 46.8 -57.8 -58.4 9.9 3.5 2.8 88 206 A M H 3X S+ 0 0 0 -4,-3.0 4,-3.3 1,-0.2 5,-0.3 0.827 106.3 59.1 -53.2 -42.2 7.5 0.9 1.6 89 207 A E H 3X S+ 0 0 82 -4,-2.8 4,-2.2 -5,-0.2 -1,-0.2 0.916 109.5 43.8 -59.2 -43.2 5.2 1.4 4.7 90 208 A R H