==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 03-AUG-10 2L1Q . COMPND 2 MOLECULE: LIVER-EXPRESSED ANTIMICROBIAL PEPTIDE 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.J.CLARK . 40 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3172.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 22 55.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 5.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 12.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 15.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 196 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 101.5 -11.8 -3.6 -8.0 2 2 A T + 0 0 104 1,-0.0 2,-2.2 0, 0.0 3,-0.2 0.321 360.0 76.2-154.8 -55.0 -12.8 -0.3 -6.2 3 3 A P > + 0 0 65 0, 0.0 3,-0.9 0, 0.0 5,-0.1 -0.445 46.1 157.3 -74.6 75.8 -12.9 -0.5 -2.4 4 4 A F T 3 S+ 0 0 37 -2,-2.2 9,-1.7 1,-0.3 20,-0.2 0.687 74.0 52.2 -71.8 -18.4 -9.1 -0.4 -1.8 5 5 A W T 3 S+ 0 0 132 7,-0.3 -1,-0.3 -3,-0.2 2,-0.2 -0.274 98.5 84.9-112.5 44.4 -9.8 0.9 1.7 6 6 A R S < S- 0 0 157 -3,-0.9 2,-2.5 5,-0.0 7,-0.0 -0.761 97.3 -69.6-133.8-179.0 -12.3 -1.8 2.8 7 7 A G S S+ 0 0 84 -2,-0.2 4,-0.1 4,-0.1 -3,-0.1 -0.416 72.0 156.5 -76.3 68.2 -12.3 -5.3 4.3 8 8 A V - 0 0 52 -2,-2.5 -4,-0.0 2,-0.2 16,-0.0 -0.174 62.0 -93.1 -82.7-177.5 -11.0 -7.0 1.3 9 9 A S S S+ 0 0 116 2,-0.1 2,-0.2 -2,-0.0 -1,-0.1 0.407 111.1 40.5 -79.9 5.3 -9.2 -10.4 1.2 10 10 A L S S- 0 0 69 0, 0.0 -2,-0.2 0, 0.0 13,-0.2 -0.544 109.5 -60.7-132.5-165.8 -5.9 -8.5 1.4 11 11 A R B -a 23 0A 67 11,-2.9 13,-3.0 -2,-0.2 14,-0.3 -0.784 52.2-135.8 -90.9 123.8 -4.6 -5.5 3.3 12 12 A P > - 0 0 31 0, 0.0 3,-0.8 0, 0.0 -7,-0.3 -0.119 29.8 -95.3 -68.8 172.7 -6.4 -2.2 2.6 13 13 A I T 3 S+ 0 0 32 -9,-1.7 2,-2.1 1,-0.3 20,-0.4 0.958 123.0 53.5 -54.0 -58.7 -4.7 1.1 2.0 14 14 A G T 3 S+ 0 0 82 18,-0.1 -1,-0.3 -10,-0.1 2,-0.3 -0.167 100.8 90.7 -74.1 45.8 -4.9 2.3 5.5 15 15 A A S < S- 0 0 29 -2,-2.1 18,-2.5 -3,-0.8 2,-0.2 -0.853 79.6 -94.6-135.3 172.1 -3.2 -0.9 6.8 16 16 A S B -B 32 0B 85 -2,-0.3 16,-0.3 16,-0.2 2,-0.3 -0.505 37.1-146.1 -86.2 157.4 0.2 -2.3 7.5 17 17 A a + 0 0 3 14,-3.0 3,-0.1 -2,-0.2 16,-0.1 -0.797 29.3 174.7-124.9 163.5 2.2 -4.3 5.0 18 18 A R S S- 0 0 199 1,-0.7 2,-0.3 -2,-0.3 -1,-0.1 0.458 83.4 -2.1-132.5 -31.8 4.6 -7.2 5.0 19 19 A D S >> S- 0 0 77 1,-0.1 3,-2.0 8,-0.0 4,-0.8 -0.946 77.8-103.3-158.8 153.8 5.1 -7.7 1.2 20 20 A D G >4 S+ 0 0 70 -2,-0.3 3,-1.2 1,-0.3 7,-0.5 0.891 122.3 60.0 -52.2 -38.8 3.5 -6.0 -1.8 21 21 A S G 34 S+ 0 0 44 1,-0.3 -1,-0.3 5,-0.2 -10,-0.2 0.736 95.2 63.6 -61.2 -24.1 1.2 -9.0 -2.2 22 22 A E G <4 S+ 0 0 44 -3,-2.0 -11,-2.9 -12,-0.1 -1,-0.3 0.849 93.6 74.3 -69.1 -33.2 -0.1 -8.4 1.3 23 23 A b B X< S-a 11 0A 1 -3,-1.2 3,-1.9 -4,-0.8 5,-0.1 -0.594 85.7-129.2 -85.7 142.9 -1.5 -5.1 0.1 24 24 A I T 3 S+ 0 0 38 -13,-3.0 -1,-0.1 1,-0.3 -19,-0.1 0.847 112.5 45.2 -55.7 -38.0 -4.6 -5.0 -2.1 25 25 A T T 3 S- 0 0 37 -14,-0.3 -1,-0.3 9,-0.2 -4,-0.1 0.367 112.0-120.5 -89.4 4.5 -2.9 -2.7 -4.6 26 26 A R S < S+ 0 0 170 -3,-1.9 2,-0.3 -6,-0.5 -5,-0.2 0.912 74.9 123.2 55.9 46.3 0.3 -4.9 -4.5 27 27 A L - 0 0 32 -7,-0.5 2,-1.3 7,-0.2 7,-0.5 -0.858 45.4-165.5-141.8 101.8 2.4 -1.9 -3.3 28 28 A a E -C 33 0B 32 -2,-0.3 2,-1.3 5,-0.1 3,-0.4 -0.674 10.3-168.1 -90.6 86.0 4.3 -2.2 -0.1 29 29 A R E > S-C 32 0B 63 3,-1.9 3,-0.8 -2,-1.3 -12,-0.1 -0.626 73.1 -38.6 -79.7 93.7 5.2 1.4 0.7 30 30 A K T 3 S- 0 0 115 -2,-1.3 -1,-0.3 1,-0.3 3,-0.1 0.911 121.6 -45.1 53.7 49.8 7.8 1.2 3.5 31 31 A R T 3 S+ 0 0 183 -3,-0.4 -14,-3.0 1,-0.3 2,-0.3 0.655 126.8 98.0 70.6 17.0 5.9 -1.7 5.2 32 32 A R E < S-BC 16 29B 106 -3,-0.8 -3,-1.9 -16,-0.3 -1,-0.3 -0.923 73.4-113.7-130.7 158.0 2.6 0.1 4.7 33 33 A b E + C 0 28B 10 -18,-2.5 2,-0.3 -20,-0.4 -5,-0.1 -0.551 44.2 140.3 -91.0 158.9 -0.1 -0.1 2.2 34 34 A S - 0 0 8 -7,-0.5 -9,-0.2 -2,-0.2 -7,-0.2 -0.961 46.6 -90.5-177.9 172.9 -1.1 2.6 -0.4 35 35 A L S S- 0 0 61 -2,-0.3 2,-2.9 1,-0.1 -6,-0.1 0.139 81.1 -47.2 -79.9-157.2 -2.2 3.2 -3.9 36 36 A S S S+ 0 0 114 1,-0.2 -1,-0.1 2,-0.1 2,-0.1 -0.228 107.1 109.7 -72.5 52.7 0.1 3.8 -6.8 37 37 A V + 0 0 72 -2,-2.9 2,-1.7 -10,-0.1 -1,-0.2 -0.481 29.9 156.4-128.2 59.9 2.0 6.3 -4.6 38 38 A A + 0 0 66 -4,-0.1 2,-0.4 -2,-0.1 -2,-0.1 -0.360 39.9 109.5 -84.7 58.2 5.3 4.7 -3.8 39 39 A Q 0 0 172 -2,-1.7 -10,-0.0 -10,-0.0 -1,-0.0 -0.917 360.0 360.0-140.7 110.4 7.0 8.0 -3.1 40 40 A E 0 0 117 -2,-0.4 -10,-0.1 0, 0.0 -3,-0.0 -0.919 360.0 360.0-178.7 360.0 8.1 9.1 0.4