==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 27-FEB-02 1L3H . COMPND 2 MOLECULE: MHC CLASS II-ASSOCIATED P41 INVARIANT CHAIN . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.CHIVA,P.BARTHE,A.CODINA,E.GIRALT . 65 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4303.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 29 44.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 16.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 153 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0-179.0 14.0 9.0 0.5 2 2 A T > - 0 0 43 25,-0.0 4,-3.1 1,-0.0 5,-0.2 -0.910 360.0 -92.2-140.9 167.4 10.9 8.6 2.8 3 3 A K H > S+ 0 0 136 -2,-0.3 4,-2.7 1,-0.2 5,-0.2 0.883 129.5 50.7 -52.7 -38.8 9.5 5.9 5.1 4 4 A a H > S+ 0 0 1 23,-0.3 4,-3.0 2,-0.2 5,-0.3 0.985 112.3 42.7 -58.5 -62.4 7.5 4.7 2.0 5 5 A Q H > S+ 0 0 73 22,-0.6 4,-1.5 1,-0.2 -2,-0.2 0.824 115.7 51.9 -60.5 -32.8 10.5 4.6 -0.4 6 6 A E H X S+ 0 0 80 -4,-3.1 4,-3.0 2,-0.2 3,-0.3 0.976 112.6 43.1 -61.1 -59.0 12.6 3.0 2.4 7 7 A E H X S+ 0 0 62 -4,-2.7 4,-2.9 1,-0.2 -2,-0.2 0.886 114.2 51.3 -59.3 -39.9 10.0 0.2 3.0 8 8 A V H < S+ 0 0 32 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.812 115.6 43.4 -65.2 -32.3 9.5 -0.2 -0.8 9 9 A S H < S+ 0 0 76 -4,-1.5 -2,-0.2 -3,-0.3 -1,-0.2 0.882 118.0 43.4 -73.6 -45.3 13.3 -0.6 -1.1 10 10 A H H < S+ 0 0 141 -4,-3.0 -2,-0.2 1,-0.2 -3,-0.2 0.812 110.6 56.9 -77.2 -34.1 13.7 -2.9 2.0 11 11 A I S < S- 0 0 51 -4,-2.9 -1,-0.2 -5,-0.2 4,-0.1 -0.900 90.3-149.7 -92.6 102.8 10.7 -5.1 1.1 12 12 A P - 0 0 72 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 -0.254 30.5 -97.3 -70.5 167.6 11.6 -6.3 -2.4 13 13 A A S S+ 0 0 69 1,-0.3 2,-1.8 2,-0.1 -4,-0.0 0.738 114.6 83.9 -57.2 -21.6 9.1 -7.2 -5.1 14 14 A V + 0 0 134 1,-0.2 -1,-0.3 2,-0.0 0, 0.0 -0.255 56.6 123.2 -73.9 47.6 9.5 -10.9 -4.0 15 15 A H > + 0 0 30 -2,-1.8 3,-2.4 -4,-0.1 -1,-0.2 0.530 22.5 141.9 -88.8 -10.2 6.9 -10.1 -1.2 16 16 A P T 3 S+ 0 0 109 0, 0.0 3,-0.1 0, 0.0 20,-0.0 -0.120 74.8 33.3 -42.3 114.1 4.3 -12.9 -2.0 17 17 A G T 3 S+ 0 0 69 1,-0.4 2,-0.2 0, 0.0 -2,-0.1 0.104 122.2 53.6 114.1 -11.2 3.1 -14.1 1.5 18 18 A S S < S- 0 0 49 -3,-2.4 19,-0.7 2,-0.0 -1,-0.4 -0.824 88.4 -89.5-140.0 171.7 3.5 -10.5 2.9 19 19 A F - 0 0 55 -2,-0.2 16,-0.1 17,-0.1 0, 0.0 -0.606 31.1-172.0 -81.7 152.2 2.5 -6.8 2.4 20 20 A R - 0 0 57 14,-0.5 14,-0.4 -2,-0.2 16,-0.2 -0.968 17.0-135.6-142.4 127.6 4.5 -4.3 0.3 21 21 A P - 0 0 2 0, 0.0 2,-0.3 0, 0.0 12,-0.1 -0.127 10.2-145.1 -73.4 176.4 3.7 -0.5 0.1 22 22 A K - 0 0 64 8,-0.2 8,-2.4 10,-0.0 2,-0.3 -0.982 11.4-151.4-140.3 150.3 3.6 1.8 -2.9 23 23 A a B -A 29 0A 35 6,-0.3 6,-0.2 -2,-0.3 2,-0.1 -0.860 5.8-130.6-132.6 157.9 4.6 5.5 -3.3 24 24 A D > - 0 0 29 4,-2.8 3,-2.4 -2,-0.3 6,-0.1 -0.293 43.1 -80.6 -99.3 179.4 3.6 8.6 -5.3 25 25 A E T 3 S+ 0 0 135 1,-0.3 -1,-0.0 2,-0.1 -2,-0.0 0.416 130.9 49.8 -62.2 -2.1 5.3 11.4 -7.4 26 26 A N T 3 S- 0 0 119 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.023 118.7-109.5-122.7 19.3 6.1 13.2 -4.1 27 27 A G S < S+ 0 0 6 -3,-2.4 -22,-0.6 1,-0.2 -23,-0.3 0.507 80.6 125.1 66.3 5.4 7.6 10.1 -2.4 28 28 A N S S- 0 0 66 1,-0.1 -4,-2.8 -24,-0.1 -1,-0.2 -0.451 77.4 -74.6 -85.8 164.4 4.6 9.8 -0.0 29 29 A Y B -A 23 0A 18 17,-2.5 -6,-0.3 -6,-0.2 19,-0.2 -0.443 54.8-107.9 -62.1 127.5 2.5 6.6 0.3 30 30 A L - 0 0 43 -8,-2.4 -8,-0.2 -2,-0.2 -1,-0.1 -0.420 30.9-117.2 -54.3 125.6 0.3 6.2 -2.8 31 31 A P S S+ 0 0 13 0, 0.0 13,-2.2 0, 0.0 2,-0.4 0.513 104.3 55.5 -51.2 -8.5 -3.4 7.0 -1.5 32 32 A L E S-B 43 0B 17 11,-0.3 2,-0.3 30,-0.1 11,-0.2 -0.999 71.6-175.0-119.5 127.3 -4.3 3.3 -2.4 33 33 A Q E -B 42 0B 2 9,-3.0 9,-2.5 -2,-0.4 2,-0.4 -0.951 5.7-159.5-120.7 146.3 -2.3 0.5 -0.9 34 34 A b E -B 41 0B 15 -14,-0.4 2,-1.7 -2,-0.3 -14,-0.5 -0.979 21.9-150.0-135.4 124.1 -2.7 -3.3 -1.7 35 35 A Y E >>> -B 40 0B 77 5,-1.9 3,-2.7 -2,-0.4 5,-1.1 -0.576 27.0-177.2 -84.2 71.1 -1.7 -6.4 0.2 36 36 A G T 345S+ 0 0 48 -2,-1.7 3,-0.5 1,-0.3 -1,-0.2 0.759 70.5 72.7 -47.6 -35.9 -1.3 -8.3 -3.1 37 37 A S T 345S+ 0 0 43 -19,-0.7 -1,-0.3 1,-0.3 -18,-0.1 0.658 118.1 20.5 -54.6 -22.7 -0.4 -11.6 -1.3 38 38 A I T <45S- 0 0 91 -3,-2.7 -1,-0.3 2,-0.2 -2,-0.2 0.289 109.3-119.2-122.7 -0.9 -4.2 -11.8 -0.4 39 39 A G T <5 + 0 0 33 -4,-0.9 -3,-0.2 -3,-0.5 2,-0.2 0.587 67.4 137.3 70.6 12.1 -5.5 -9.4 -3.1 40 40 A Y E < -B 35 0B 58 -5,-1.1 -5,-1.9 18,-0.1 2,-0.3 -0.598 30.2-173.5 -84.1 154.1 -6.9 -6.9 -0.5 41 41 A b E -BC 34 56B 2 15,-2.6 15,-3.1 17,-0.4 2,-0.3 -0.925 10.0-177.5-137.9 165.3 -6.5 -3.1 -0.6 42 42 A W E -B 33 0B 41 -9,-2.5 -9,-3.0 -2,-0.3 2,-0.3 -0.960 30.8-108.8-147.4 162.5 -7.3 0.1 1.4 43 43 A c E -B 32 0B 16 8,-0.4 8,-2.8 -2,-0.3 2,-0.3 -0.676 36.3-164.2 -86.0 153.6 -6.9 3.8 1.0 44 44 A V B -D 50 0C 5 -13,-2.2 6,-0.2 6,-0.3 19,-0.1 -0.944 22.8-116.2-132.4 156.8 -4.2 5.7 3.0 45 45 A F > - 0 0 99 4,-2.6 3,-3.1 -2,-0.3 -16,-0.1 -0.516 52.0 -93.2 -76.1 160.6 -3.3 9.3 3.9 46 46 A P T 3 S+ 0 0 68 0, 0.0 -17,-2.5 0, 0.0 -22,-0.1 0.754 128.2 60.7 -52.2 -26.5 0.1 10.4 2.4 47 47 A N T 3 S- 0 0 99 -19,-0.2 -44,-0.0 2,-0.1 0, 0.0 0.482 122.7-104.6 -75.5 -8.3 1.8 9.3 5.6 48 48 A G S < S+ 0 0 26 -3,-3.1 2,-0.3 1,-0.3 -18,-0.0 0.321 73.3 140.8 98.6 -3.1 0.6 5.7 5.1 49 49 A T - 0 0 84 -4,-0.1 -4,-2.6 1,-0.1 -1,-0.3 -0.563 57.0-109.6 -73.7 130.7 -2.2 5.6 7.7 50 50 A E B -D 44 0C 60 -2,-0.3 -6,-0.3 -6,-0.2 -1,-0.1 -0.294 20.7-123.5 -59.8 139.7 -5.3 3.6 6.5 51 51 A V > - 0 0 44 -8,-2.8 3,-1.8 1,-0.1 -8,-0.4 -0.804 52.1 -91.5 -82.7 115.5 -8.6 5.6 5.7 52 52 A P T 3 S- 0 0 87 0, 0.0 -1,-0.1 0, 0.0 -8,-0.0 0.085 99.3 -1.7 -43.5 134.8 -11.1 3.9 8.1 53 53 A N T 3 S+ 0 0 164 1,-0.1 -2,-0.0 -3,-0.0 -3,-0.0 0.478 95.2 111.6 62.9 11.1 -13.2 0.9 6.7 54 54 A T < + 0 0 31 -3,-1.8 2,-0.3 -11,-0.2 -13,-0.2 0.766 40.7 116.0 -77.7 -22.3 -11.6 1.1 3.2 55 55 A R + 0 0 146 -4,-0.3 -13,-0.3 -12,-0.1 2,-0.2 -0.265 49.9 147.7 -51.7 103.8 -9.8 -2.3 3.9 56 56 A S B -C 41 0B 56 -15,-3.1 -15,-2.6 -2,-0.3 -2,-0.1 -0.847 63.7 -85.4-144.9 171.2 -11.6 -4.4 1.2 57 57 A R S S- 0 0 146 -2,-0.2 2,-0.3 -17,-0.2 -15,-0.1 0.361 102.4 -12.9 -63.6 -3.9 -11.4 -7.4 -1.3 58 58 A G S S- 0 0 23 -17,-0.2 -17,-0.4 1,-0.1 -2,-0.3 -0.955 94.1 -32.9-177.7-172.9 -9.8 -5.2 -4.1 59 59 A H - 0 0 151 -2,-0.3 2,-0.3 -19,-0.1 -18,-0.1 0.025 43.8-170.5 -57.6 164.2 -9.0 -1.7 -5.3 60 60 A H - 0 0 42 -18,-0.1 2,-2.0 -4,-0.0 -18,-0.1 -0.962 38.5 -91.8-154.5 167.1 -11.0 1.6 -4.8 61 61 A N + 0 0 173 -2,-0.3 -18,-0.0 2,-0.1 -29,-0.0 -0.408 57.6 171.6 -85.1 60.8 -10.9 5.2 -6.2 62 62 A c - 0 0 19 -2,-2.0 2,-2.0 1,-0.1 -30,-0.1 -0.169 52.7 -84.1 -68.9 170.8 -8.7 6.8 -3.6 63 63 A S + 0 0 95 -32,-0.3 -1,-0.1 1,-0.2 -2,-0.1 -0.010 67.5 151.8 -65.8 33.2 -7.2 10.4 -3.7 64 64 A E 0 0 74 -2,-2.0 -1,-0.2 1,-0.2 -32,-0.1 0.360 360.0 360.0 -61.6 4.1 -4.2 9.2 -6.0 65 65 A S 0 0 146 -3,-0.1 -1,-0.2 -41,-0.1 -2,-0.1 0.296 360.0 360.0 27.3 360.0 -4.0 12.7 -7.5