==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXYGEN STORAGE/TRANSPORT 28-FEB-02 1L3O . COMPND 2 MOLECULE: CYTOCHROME C7; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFUROMONAS ACETOXIDANS; . AUTHOR M.ASSFALG,I.BERTINI,P.TURANO,M.BRUSCHI,M.C.DURAND, . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5766.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 60.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 19.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 96 0, 0.0 2,-0.2 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 142.4 -11.2 -8.7 0.2 2 2 A D - 0 0 123 15,-0.2 15,-0.5 16,-0.1 2,-0.4 -0.457 360.0 -49.9-117.1 177.2 -8.1 -10.8 -0.7 3 3 A V B -A 16 0A 72 13,-0.2 13,-0.2 1,-0.2 -1,-0.1 -0.373 52.3-179.2 -59.6 111.1 -4.6 -10.3 -2.1 4 4 A V - 0 0 77 11,-2.8 -1,-0.2 -2,-0.4 12,-0.1 0.931 14.3-157.5 -82.0 -49.6 -5.1 -8.2 -5.3 5 5 A T - 0 0 44 10,-0.3 2,-0.7 1,-0.1 7,-0.0 0.929 10.8-135.5 63.9 103.7 -1.5 -7.8 -6.7 6 6 A Y - 0 0 88 5,-0.0 7,-1.8 2,-0.0 2,-0.5 -0.814 17.2-152.3 -84.9 115.3 -0.9 -4.8 -9.0 7 7 A E + 0 0 152 -2,-0.7 2,-0.3 5,-0.2 5,-0.1 -0.821 26.2 165.6 -93.7 115.8 1.2 -6.0 -12.0 8 8 A N > - 0 0 60 -2,-0.5 3,-2.5 1,-0.0 -2,-0.0 -0.941 49.9-111.9-139.8 151.7 3.3 -3.2 -13.4 9 9 A A T 3 S+ 0 0 122 -2,-0.3 3,-0.1 1,-0.3 -1,-0.0 0.742 117.9 53.7 -62.9 -22.9 6.2 -2.9 -15.9 10 10 A A T 3 S- 0 0 77 1,-0.3 -1,-0.3 52,-0.0 2,-0.1 0.319 132.5 -63.8 -89.8 4.5 8.5 -1.7 -13.0 11 11 A G < - 0 0 12 -3,-2.5 -1,-0.3 55,-0.1 57,-0.1 -0.027 57.3 -85.2 121.2 138.2 7.6 -4.8 -10.8 12 12 A N - 0 0 57 -5,-0.1 55,-2.8 54,-0.1 -5,-0.2 -0.325 34.9-154.4 -73.0 160.6 4.4 -6.1 -9.2 13 13 A V - 0 0 29 -7,-1.8 -6,-0.1 53,-0.2 -1,-0.1 0.393 22.7-121.9-129.2 -2.5 3.6 -4.5 -5.8 14 14 A T - 0 0 61 -8,-0.2 2,-1.5 1,-0.2 -7,-0.0 0.972 14.8-154.6 55.0 78.9 1.4 -6.9 -3.7 15 15 A F - 0 0 53 1,-0.1 -11,-2.8 4,-0.0 2,-2.0 -0.631 12.4-163.1 -74.5 87.1 -1.9 -5.2 -2.7 16 16 A D B >> +A 3 0A 40 -2,-1.5 4,-1.2 -13,-0.2 5,-0.8 -0.467 20.4 168.1 -75.5 75.9 -2.5 -7.3 0.5 17 17 A H T 45S+ 0 0 87 -2,-2.0 4,-0.2 -15,-0.5 -1,-0.2 0.891 85.5 23.1 -60.6 -35.3 -6.2 -6.5 1.0 18 18 A K T >5S+ 0 0 96 -3,-0.2 4,-2.7 3,-0.1 5,-0.2 0.917 121.1 52.0 -84.9 -66.1 -6.2 -9.4 3.6 19 19 A A T 45S+ 0 0 45 1,-0.2 4,-0.5 2,-0.2 -2,-0.1 0.804 116.2 39.9 -58.8 -37.4 -2.6 -9.9 4.8 20 20 A H T >X5S+ 0 0 80 -4,-1.2 4,-3.0 2,-0.2 3,-2.1 0.975 115.9 52.7 -66.8 -54.7 -2.0 -6.2 5.8 21 21 A A H 3>> S+ 0 0 80 1,-0.2 3,-2.8 -8,-0.1 4,-0.6 -0.346 120.5 81.5 66.1 -56.2 -8.9 -1.9 7.7 27 27 A D G >4 S+ 0 0 109 -2,-2.5 3,-1.8 1,-0.3 -1,-0.2 0.835 77.0 70.0 -38.4 -49.2 -9.1 1.5 9.5 28 28 A A G 34 S+ 0 0 63 1,-0.3 -1,-0.3 -4,-0.2 3,-0.1 0.667 116.1 23.4 -43.6 -30.3 -5.4 1.9 8.9 29 29 A C G <4 S+ 0 0 78 -3,-2.8 2,-0.3 1,-0.2 -1,-0.3 0.316 127.6 49.9-114.9 -1.4 -6.1 2.4 5.1 30 30 A H S << S- 0 0 35 -3,-1.8 2,-2.1 -4,-0.6 -1,-0.2 -0.807 71.5-137.6-156.3 100.8 -9.8 3.5 5.4 31 31 A E S S- 0 0 197 -2,-0.3 2,-2.5 2,-0.2 -4,-0.1 -0.347 74.7 -64.9 -66.5 80.0 -11.4 6.2 7.5 32 32 A G S S+ 0 0 74 -2,-2.1 -1,-0.2 1,-0.0 -5,-0.1 -0.299 131.5 66.2 77.0 -58.1 -14.6 4.3 8.6 33 33 A T S S- 0 0 118 -2,-2.5 -2,-0.2 -6,-0.1 2,-0.2 -0.850 79.0-150.3 -95.5 101.8 -16.1 4.1 5.1 34 34 A P + 0 0 86 0, 0.0 2,-0.3 0, 0.0 -4,-0.1 -0.501 30.4 154.5 -71.7 143.4 -13.8 1.8 2.9 35 35 A A - 0 0 66 -2,-0.2 2,-1.8 0, 0.0 -2,-0.0 -0.961 53.1 -68.2-162.6 167.1 -13.9 2.7 -0.8 36 36 A K - 0 0 209 -2,-0.3 2,-0.3 1,-0.0 3,-0.0 -0.483 48.1-162.3 -76.7 86.0 -11.8 2.6 -4.0 37 37 A I - 0 0 92 -2,-1.8 2,-0.5 1,-0.1 -1,-0.0 -0.483 25.3-116.8 -59.5 124.1 -8.9 4.9 -3.3 38 38 A A - 0 0 87 -2,-0.3 2,-0.4 5,-0.0 -1,-0.1 -0.576 35.2-167.6 -70.7 117.4 -7.2 5.8 -6.7 39 39 A I + 0 0 37 -2,-0.5 2,-0.3 4,-0.1 -3,-0.0 -0.892 19.6 139.6-107.9 136.7 -3.6 4.5 -6.7 40 40 A D > - 0 0 54 -2,-0.4 4,-2.5 0, 0.0 5,-0.3 -0.938 64.4 -64.7-157.8-176.0 -0.9 5.5 -9.3 41 41 A K T 4 S+ 0 0 184 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 0.146 131.7 32.2 -76.5 24.2 2.7 6.5 -9.9 42 42 A K T >> S+ 0 0 126 -2,-0.1 4,-2.3 3,-0.0 3,-2.1 0.382 117.9 51.1-122.8 -54.4 2.4 9.7 -7.9 43 43 A S H 3>>S+ 0 0 41 1,-0.3 4,-1.3 2,-0.2 5,-0.9 0.893 112.7 45.5 -50.4 -52.3 -0.1 8.7 -5.2 44 44 A A H 3<5S+ 0 0 25 -4,-2.5 6,-0.3 1,-0.2 -1,-0.3 0.489 118.1 45.2 -70.2 -7.8 1.7 5.5 -4.2 45 45 A H H <45S+ 0 0 95 -3,-2.1 -2,-0.2 -5,-0.3 -1,-0.2 0.652 113.9 44.5-112.0 -25.5 5.1 7.3 -4.1 46 46 A K H <5S- 0 0 142 -4,-2.3 -2,-0.1 -3,-0.3 -3,-0.1 0.967 133.2 -40.1 -79.8 -66.3 4.2 10.5 -2.2 47 47 A D T X>S+ 0 0 93 -4,-1.3 4,-2.3 -5,-0.2 5,-0.6 0.607 101.9 98.3-143.5 -52.3 2.0 9.5 0.8 48 48 A A T 45S+ 0 0 76 1,-0.2 4,-2.3 -3,-0.1 3,-0.4 -0.356 133.9 72.8 70.2 -58.7 1.2 3.5 1.4 50 50 A K H >5S+ 0 0 39 -2,-2.6 4,-3.1 -6,-0.3 5,-0.2 0.913 90.9 52.4 -44.2 -62.4 4.6 5.3 1.5 51 51 A T H X5S+ 0 0 48 -4,-2.3 4,-1.2 2,-0.2 -1,-0.2 0.822 111.1 47.6 -60.8 -30.7 3.9 7.6 4.6 52 52 A C H >4<>S+ 0 0 43 -4,-2.3 3,-1.3 1,-0.3 5,-0.6 0.841 108.7 56.1 -47.2 -42.7 6.0 2.7 5.4 54 54 A K H 3<5S+ 0 0 119 -4,-3.1 -1,-0.3 1,-0.3 -2,-0.2 0.841 115.2 38.1 -54.7 -40.3 8.0 6.0 6.2 55 55 A S T <<5S+ 0 0 101 -3,-1.3 2,-0.3 -4,-1.2 -1,-0.3 -0.105 111.0 74.9-108.4 29.4 6.7 5.8 9.9 56 56 A N T < 5S- 0 0 89 -3,-1.3 2,-2.5 2,-0.1 -4,-0.0 -0.982 91.3-107.4-138.2 150.9 6.9 1.9 10.2 57 57 A N T 5S+ 0 0 189 -2,-0.3 -3,-0.1 0, 0.0 -4,-0.1 -0.431 87.9 101.5 -72.7 64.9 9.7 -0.6 10.6 58 58 A G S S- 0 0 162 1,-0.1 3,-2.4 2,-0.1 4,-0.3 -0.332 86.2-104.4 -66.0 151.6 13.2 1.7 -1.5 62 62 A C G >> S+ 0 0 95 1,-0.3 4,-3.0 2,-0.2 3,-2.5 0.897 120.4 48.0 -40.7 -63.7 11.7 0.8 -5.0 63 63 A G G 34 S+ 0 0 36 1,-0.3 -1,-0.3 2,-0.2 5,-0.1 0.220 104.3 62.9 -73.5 13.8 12.9 -2.8 -5.0 64 64 A G G <4 S+ 0 0 38 -3,-2.4 -1,-0.3 3,-0.1 -2,-0.2 0.270 118.8 24.9-108.8 0.7 11.5 -3.2 -1.4 65 65 A C T <4 S+ 0 0 60 -3,-2.5 2,-0.4 1,-0.3 -2,-0.2 0.553 119.0 60.8-124.8 -46.5 7.9 -2.6 -2.7 66 66 A H S < S- 0 0 39 -4,-3.0 -1,-0.3 -5,-0.2 -53,-0.2 -0.699 88.9-117.0 -79.0 133.4 8.3 -3.6 -6.4 67 67 A I 0 0 104 -55,-2.8 -3,-0.1 -2,-0.4 -1,-0.1 -0.293 360.0 360.0 -56.2 150.6 9.2 -7.2 -7.2 68 68 A K 0 0 234 -5,-0.1 -1,-0.1 -57,-0.1 -5,-0.1 0.273 360.0 360.0-157.9 360.0 12.6 -7.6 -9.1