==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-SEP-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 13-SEP-10 2L3D . COMPND 2 MOLECULE: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.LIU,K.LO,G.ZHU,K.SZE . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8418.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 57.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 37.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 120 0, 0.0 2,-1.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 135.1 13.6 -12.4 -14.7 2 2 A S + 0 0 143 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.446 360.0 92.6 -80.6 64.4 15.8 -12.0 -17.8 3 3 A V + 0 0 132 -2,-1.9 2,-0.3 3,-0.0 3,-0.0 -0.982 42.8 165.8-153.7 148.9 13.2 -13.5 -20.2 4 4 A E + 0 0 191 -2,-0.3 3,-0.1 1,-0.0 -2,-0.0 -0.920 42.0 80.6-152.0 175.7 10.4 -12.2 -22.5 5 5 A G S S+ 0 0 85 -2,-0.3 2,-0.3 1,-0.1 -1,-0.0 0.348 84.3 76.7 98.9 -1.4 8.0 -13.2 -25.4 6 6 A A + 0 0 85 2,-0.0 2,-0.3 -3,-0.0 -1,-0.1 -0.996 50.2 175.2-139.3 133.5 5.4 -15.2 -23.2 7 7 A A + 0 0 96 -2,-0.3 2,-0.3 -3,-0.1 -3,-0.0 -0.957 10.5 160.3-143.7 117.5 2.6 -13.7 -21.0 8 8 A F - 0 0 181 -2,-0.3 -2,-0.0 2,-0.2 0, 0.0 -0.888 43.0-122.5-136.1 163.6 -0.0 -15.8 -19.1 9 9 A Q S S+ 0 0 165 -2,-0.3 -1,-0.1 2,-0.0 2,-0.1 0.970 94.5 50.3 -72.1 -59.9 -2.5 -15.4 -16.1 10 10 A S S S- 0 0 44 2,-0.1 -2,-0.2 1,-0.1 38,-0.0 -0.279 70.3-145.5 -73.9 166.8 -1.3 -18.4 -14.0 11 11 A R + 0 0 198 2,-0.1 -1,-0.1 -2,-0.1 -2,-0.0 -0.156 63.4 97.1-129.0 31.9 2.4 -19.0 -13.0 12 12 A L S S- 0 0 37 1,-0.1 -2,-0.1 32,-0.0 2,-0.0 -0.815 71.5 -98.5-125.0 160.5 2.6 -22.9 -13.0 13 13 A P - 0 0 33 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 -0.235 33.2-109.0 -74.1 168.4 3.6 -25.7 -15.5 14 14 A H S S- 0 0 171 1,-0.2 0, 0.0 -2,-0.0 0, 0.0 -0.847 89.7 -35.9 -99.6 96.4 1.4 -27.8 -17.8 15 15 A D S S+ 0 0 117 -2,-0.8 2,-0.3 1,-0.2 -1,-0.2 0.829 104.6 128.5 58.7 41.8 1.4 -31.4 -16.2 16 16 A R - 0 0 190 24,-0.1 2,-1.1 2,-0.0 -1,-0.2 -0.979 65.0-114.8-128.5 143.4 5.0 -31.4 -15.0 17 17 A M + 0 0 128 -2,-0.3 2,-0.3 3,-0.0 20,-0.0 -0.605 46.8 171.1 -74.0 93.4 6.7 -32.2 -11.6 18 18 A T > - 0 0 44 -2,-1.1 4,-1.0 1,-0.1 3,-0.3 -0.779 43.0-132.0-104.3 153.9 8.3 -28.8 -10.5 19 19 A S H > S+ 0 0 100 -2,-0.3 4,-2.0 1,-0.2 -1,-0.1 0.678 95.1 82.6 -70.3 -18.7 9.9 -27.9 -7.1 20 20 A Q H 4 S+ 0 0 92 2,-0.2 4,-0.3 1,-0.2 -1,-0.2 0.924 101.8 28.5 -55.7 -56.8 7.7 -24.6 -7.1 21 21 A E H >4 S+ 0 0 12 -3,-0.3 3,-2.1 1,-0.2 4,-0.5 0.957 117.5 60.4 -68.5 -48.2 4.5 -26.3 -5.7 22 22 A A H >< S+ 0 0 6 -4,-1.0 3,-1.0 1,-0.3 7,-0.3 0.717 88.4 72.8 -54.3 -27.8 6.5 -29.0 -3.8 23 23 A A T 3< S+ 0 0 85 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.1 0.805 103.0 41.8 -57.8 -31.4 8.3 -26.3 -1.7 24 24 A C T < S+ 0 0 35 -3,-2.1 -1,-0.3 -4,-0.3 -2,-0.2 0.544 120.0 46.9 -87.3 -10.5 5.0 -25.7 0.2 25 25 A F X> + 0 0 10 -3,-1.0 4,-1.6 -4,-0.5 3,-1.2 -0.581 59.3 161.8-135.5 66.2 4.3 -29.5 0.4 26 26 A P H 3> S+ 0 0 76 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.885 77.9 56.5 -63.1 -37.4 7.4 -31.4 1.6 27 27 A D H 34 S+ 0 0 142 1,-0.2 -5,-0.0 2,-0.2 -2,-0.0 0.726 106.8 52.3 -63.5 -23.3 5.5 -34.6 2.6 28 28 A I H X4 S+ 0 0 22 -3,-1.2 3,-0.8 -6,-0.2 8,-0.4 0.940 112.5 40.5 -79.3 -52.1 4.1 -34.8 -1.1 29 29 A I H 3< S+ 0 0 80 -4,-1.6 -2,-0.2 -7,-0.3 -1,-0.1 0.859 118.2 48.1 -69.1 -34.4 7.4 -34.6 -3.0 30 30 A S T 3< S+ 0 0 109 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.488 106.4 83.6 -77.9 -5.4 9.1 -36.9 -0.3 31 31 A G S < S- 0 0 27 -3,-0.8 -3,-0.1 -5,-0.2 2,-0.0 -0.201 93.7 -70.1 -86.3-179.4 6.0 -39.2 -0.8 32 32 A P >> - 0 0 75 0, 0.0 4,-1.5 0, 0.0 3,-1.0 -0.249 48.4 -99.9 -72.5 165.1 5.2 -41.9 -3.5 33 33 A Q H 3> S+ 0 0 150 1,-0.3 4,-1.5 2,-0.2 5,-0.1 0.783 121.5 57.0 -58.0 -31.4 4.5 -41.2 -7.2 34 34 A Q H 3> S+ 0 0 144 2,-0.2 4,-2.5 3,-0.1 -1,-0.3 0.875 104.8 52.5 -65.1 -37.3 0.7 -41.6 -6.6 35 35 A T H <> S+ 0 0 38 -3,-1.0 4,-2.4 2,-0.2 5,-0.2 0.956 110.6 43.8 -70.7 -52.5 0.7 -38.8 -3.9 36 36 A Q H X S+ 0 0 30 -4,-1.5 4,-2.6 -8,-0.4 5,-0.2 0.885 114.3 54.3 -57.9 -37.7 2.4 -36.1 -6.0 37 37 A K H X S+ 0 0 93 -4,-1.5 4,-2.7 -5,-0.2 -2,-0.2 0.967 112.1 40.3 -60.5 -58.3 0.2 -37.1 -9.0 38 38 A V H X S+ 0 0 29 -4,-2.5 4,-2.5 2,-0.2 5,-0.2 0.918 117.9 49.0 -59.2 -44.1 -3.2 -36.6 -7.1 39 39 A F H X S+ 0 0 9 -4,-2.4 4,-2.7 -5,-0.2 -2,-0.2 0.947 115.8 42.0 -62.1 -51.4 -2.0 -33.5 -5.3 40 40 A L H X S+ 0 0 17 -4,-2.6 4,-2.8 -5,-0.2 5,-0.2 0.919 114.4 51.5 -58.7 -49.7 -0.7 -31.8 -8.6 41 41 A F H X S+ 0 0 86 -4,-2.7 4,-2.4 -5,-0.2 -2,-0.2 0.929 114.9 42.3 -60.2 -46.9 -3.7 -32.9 -10.7 42 42 A I H X S+ 0 0 2 -4,-2.5 4,-3.1 -5,-0.2 -2,-0.2 0.971 114.7 50.7 -57.5 -57.7 -6.2 -31.4 -8.0 43 43 A R H X S+ 0 0 6 -4,-2.7 4,-2.1 -5,-0.2 -2,-0.2 0.859 114.3 44.1 -55.8 -41.6 -4.1 -28.2 -7.5 44 44 A N H X S+ 0 0 22 -4,-2.8 4,-2.5 2,-0.2 -1,-0.2 0.965 114.3 48.5 -62.9 -55.9 -3.9 -27.6 -11.3 45 45 A R H X S+ 0 0 108 -4,-2.4 4,-2.7 -5,-0.2 -2,-0.2 0.891 112.4 51.9 -54.8 -43.6 -7.7 -28.4 -11.9 46 46 A T H X S+ 0 0 0 -4,-3.1 4,-2.4 2,-0.2 -2,-0.2 0.973 111.0 43.6 -50.7 -67.0 -8.5 -26.0 -8.9 47 47 A L H X S+ 0 0 26 -4,-2.1 4,-2.3 1,-0.2 -2,-0.2 0.849 115.3 50.8 -61.9 -31.9 -6.5 -23.0 -10.2 48 48 A Q H X S+ 0 0 66 -4,-2.5 4,-2.1 2,-0.2 -1,-0.2 0.963 110.2 48.3 -61.1 -55.2 -7.9 -23.6 -13.7 49 49 A L H < S+ 0 0 19 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.837 112.7 50.8 -58.3 -34.3 -11.6 -23.8 -12.4 50 50 A W H >< S+ 0 0 73 -4,-2.4 3,-1.1 -5,-0.2 -1,-0.2 0.963 114.5 40.8 -63.4 -55.2 -10.9 -20.5 -10.4 51 51 A L H 3< S+ 0 0 93 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.731 98.2 77.3 -71.4 -20.6 -9.5 -18.6 -13.4 52 52 A D T 3< S- 0 0 122 -4,-2.1 -1,-0.2 -5,-0.1 -2,-0.1 0.442 107.6-117.8 -66.3 -1.1 -12.2 -20.0 -15.9 53 53 A N < + 0 0 131 -3,-1.1 -2,-0.1 -4,-0.1 -3,-0.1 0.995 42.3 178.4 56.6 75.8 -14.7 -17.5 -14.3 54 54 A P - 0 0 61 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.921 60.5 -63.2 -72.4 -48.3 -17.3 -19.9 -12.8 55 55 A K S S- 0 0 109 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.104 93.3 -40.3-161.8 -87.3 -19.8 -17.3 -11.2 56 56 A I S S+ 0 0 163 1,-0.3 2,-0.3 -2,-0.0 -3,-0.1 0.611 122.6 8.4-125.2 -57.1 -18.4 -15.0 -8.3 57 57 A Q - 0 0 57 -4,-0.1 -1,-0.3 -3,-0.0 2,-0.3 -0.999 65.7-139.0-135.0 132.7 -16.2 -17.3 -6.1 58 58 A L - 0 0 9 -2,-0.3 2,-0.2 -3,-0.1 -8,-0.1 -0.716 28.2-176.3 -84.8 141.5 -15.0 -20.9 -6.7 59 59 A T > - 0 0 25 -2,-0.3 4,-1.9 1,-0.1 5,-0.2 -0.823 44.2 -97.1-130.2 169.9 -15.0 -23.3 -3.6 60 60 A F H > S+ 0 0 48 -2,-0.2 4,-3.0 1,-0.2 3,-0.3 0.943 126.0 52.6 -53.2 -46.1 -14.0 -26.8 -2.7 61 61 A E H > S+ 0 0 114 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.887 109.4 47.9 -57.2 -43.9 -17.7 -27.9 -3.2 62 62 A A H > S+ 0 0 12 2,-0.2 4,-0.7 1,-0.2 -1,-0.2 0.791 115.2 46.6 -69.2 -27.0 -17.6 -26.3 -6.7 63 63 A T H >X S+ 0 0 2 -4,-1.9 4,-2.2 -3,-0.3 3,-0.5 0.941 110.1 52.1 -73.5 -51.8 -14.3 -28.1 -7.5 64 64 A L H 3< S+ 0 0 21 -4,-3.0 -2,-0.2 1,-0.2 -3,-0.2 0.860 111.1 46.7 -55.6 -43.6 -15.5 -31.5 -6.1 65 65 A Q H 3< S+ 0 0 154 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.759 112.3 50.5 -73.9 -26.0 -18.7 -31.6 -8.3 66 66 A Q H << S+ 0 0 120 -4,-0.7 2,-0.4 -3,-0.5 -2,-0.2 0.900 96.9 74.7 -76.8 -45.3 -16.8 -30.5 -11.5 67 67 A L < - 0 0 22 -4,-2.2 2,-0.6 1,-0.1 5,-0.0 -0.589 65.4-161.0 -75.8 125.0 -14.0 -33.2 -11.3 68 68 A E + 0 0 194 -2,-0.4 -1,-0.1 3,-0.0 -3,-0.1 -0.548 53.4 91.2-109.3 63.8 -15.2 -36.8 -12.3 69 69 A A S > S- 0 0 32 -2,-0.6 3,-1.2 1,-0.0 4,-0.4 -0.991 82.9-112.3-150.0 155.6 -12.5 -39.1 -10.7 70 70 A P G > S+ 0 0 112 0, 0.0 3,-0.6 0, 0.0 4,-0.5 0.663 106.8 81.2 -65.1 -12.8 -11.9 -41.0 -7.4 71 71 A Y G > S+ 0 0 103 1,-0.2 3,-0.7 2,-0.2 6,-0.1 0.902 92.6 45.2 -54.8 -46.6 -8.9 -38.5 -6.9 72 72 A N G < S+ 0 0 26 -3,-1.2 -1,-0.2 1,-0.2 6,-0.2 0.627 87.6 89.8 -76.4 -14.5 -11.4 -35.8 -5.6 73 73 A S G < S+ 0 0 95 -3,-0.6 2,-1.4 -4,-0.4 -1,-0.2 0.810 70.9 79.3 -57.7 -31.1 -13.2 -38.4 -3.3 74 74 A D <> - 0 0 85 -3,-0.7 4,-1.4 -4,-0.5 3,-0.2 -0.655 64.4-178.5 -73.0 89.5 -10.6 -37.4 -0.6 75 75 A T H > S+ 0 0 70 -2,-1.4 4,-2.8 1,-0.2 5,-0.2 0.909 78.5 59.4 -57.4 -44.5 -12.3 -34.1 0.5 76 76 A V H > S+ 0 0 72 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.877 101.7 55.0 -55.4 -41.5 -9.5 -33.4 3.1 77 77 A L H > S+ 0 0 19 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.962 112.1 42.1 -54.3 -56.3 -6.9 -33.4 0.1 78 78 A V H X S+ 0 0 2 -4,-1.4 4,-2.7 2,-0.2 5,-0.2 0.923 114.2 51.7 -58.0 -47.4 -8.9 -30.7 -1.8 79 79 A H H X S+ 0 0 72 -4,-2.8 4,-2.6 2,-0.2 -2,-0.2 0.910 112.3 46.4 -59.5 -44.6 -9.5 -28.7 1.4 80 80 A R H X S+ 0 0 146 -4,-2.7 4,-2.7 2,-0.2 5,-0.3 0.964 112.3 49.9 -57.2 -56.9 -5.7 -28.7 2.3 81 81 A V H X S+ 0 0 0 -4,-2.6 4,-2.6 1,-0.2 -2,-0.2 0.904 115.4 43.9 -50.4 -50.4 -4.7 -27.8 -1.4 82 82 A H H X S+ 0 0 11 -4,-2.7 4,-2.5 2,-0.2 5,-0.2 0.923 112.4 51.5 -60.6 -51.1 -7.2 -24.8 -1.3 83 83 A S H X S+ 0 0 62 -4,-2.6 4,-1.9 -5,-0.2 -2,-0.2 0.936 115.0 42.5 -55.3 -51.0 -6.3 -23.6 2.2 84 84 A Y H X S+ 0 0 123 -4,-2.7 4,-1.8 2,-0.2 -2,-0.2 0.948 112.1 54.4 -60.1 -51.4 -2.5 -23.6 1.3 85 85 A L H X>S+ 0 0 9 -4,-2.6 5,-0.8 -5,-0.3 4,-0.8 0.891 110.5 45.6 -50.2 -49.5 -3.2 -22.0 -2.2 86 86 A E H ><5S+ 0 0 26 -4,-2.5 3,-0.6 1,-0.2 -1,-0.2 0.935 116.8 44.5 -61.1 -48.0 -5.2 -19.0 -0.6 87 87 A R H 3<5S+ 0 0 196 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.680 101.6 69.5 -69.4 -21.5 -2.5 -18.5 2.2 88 88 A H H 3<5S- 0 0 91 -4,-1.8 -1,-0.2 -3,-0.2 -2,-0.2 0.761 107.6-117.9 -75.4 -26.3 0.4 -18.8 -0.3 89 89 A G T <<5 + 0 0 54 -4,-0.8 2,-2.2 -3,-0.6 -3,-0.1 0.782 45.8 168.5 99.1 32.7 -0.4 -15.4 -2.1 90 90 A L S