==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-FEB-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-SEP-10 2L3U . COMPND 2 MOLECULE: YBBR FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; . AUTHOR A.W.BARB,H.LEE,R.L.BELOTE,C.CICCOSANTI,K.HAMILTON,T.B.ACTON, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9142.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 37.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 16.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 234 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 22.7 -5.7 20.3 11.9 2 2 A K - 0 0 131 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.928 360.0-164.6-167.3-172.3 -5.9 18.8 8.4 3 3 A T S S+ 0 0 113 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.306 75.5 80.0-162.9 -21.6 -8.0 17.0 5.8 4 4 A L - 0 0 152 2,-0.0 -2,-0.0 19,-0.0 0, 0.0 0.945 62.3-174.3 -63.9 -50.6 -5.6 15.6 3.2 5 5 A Y - 0 0 120 1,-0.1 -3,-0.0 18,-0.0 0, 0.0 0.969 6.8-176.6 48.8 80.2 -4.6 12.5 5.3 6 6 A D - 0 0 121 17,-0.1 18,-0.1 2,-0.0 -1,-0.1 0.702 25.9-152.7 -77.4 -20.7 -1.8 11.1 2.9 7 7 A L - 0 0 49 1,-0.2 17,-0.0 16,-0.1 -3,-0.0 0.456 34.4 -81.0 60.2 151.7 -1.4 8.2 5.3 8 8 A P S S+ 0 0 115 0, 0.0 2,-0.5 0, 0.0 40,-0.3 0.733 111.3 92.6 -55.6 -20.6 2.1 6.3 5.6 9 9 A I - 0 0 54 15,-0.1 2,-0.4 38,-0.1 40,-0.2 -0.651 63.3-166.9 -81.8 121.2 1.0 4.5 2.4 10 10 A V E -a 49 0A 69 38,-1.3 40,-1.0 -2,-0.5 2,-0.5 -0.851 13.6-136.9-109.4 144.2 2.2 6.2 -0.8 11 11 A L E -a 50 0A 41 -2,-0.4 3,-0.3 38,-0.2 2,-0.3 -0.870 19.5-164.4-104.2 124.4 1.0 5.4 -4.3 12 12 A R E +a 51 0A 154 38,-2.0 40,-1.5 -2,-0.5 41,-0.2 -0.760 68.4 17.3-106.3 151.7 3.6 5.2 -7.1 13 13 A N S S+ 0 0 91 -2,-0.3 -1,-0.2 1,-0.2 38,-0.0 0.917 77.5 175.3 55.9 46.4 3.0 5.3 -10.9 14 14 A L - 0 0 88 -3,-0.3 2,-0.3 37,-0.1 -1,-0.2 -0.710 26.4-139.2 -83.9 101.0 -0.5 6.8 -10.3 15 15 A P > - 0 0 46 0, 0.0 3,-2.3 0, 0.0 -1,-0.0 -0.411 7.2-143.1 -61.6 119.7 -2.0 7.6 -13.9 16 16 A E T 3 S+ 0 0 174 -2,-0.3 -2,-0.0 1,-0.3 71,-0.0 0.915 97.0 69.9 -47.9 -51.1 -3.7 11.0 -13.5 17 17 A D T 3 S+ 0 0 95 69,-0.1 70,-3.7 70,-0.1 2,-0.4 0.720 100.7 59.4 -42.2 -22.1 -6.5 9.8 -15.9 18 18 A L E < S-B 86 0B 21 -3,-2.3 2,-0.3 68,-0.3 68,-0.2 -0.869 70.7-174.6-112.9 145.4 -7.5 7.5 -13.0 19 19 A V E -B 85 0B 54 66,-2.9 66,-1.8 -2,-0.4 2,-0.5 -0.983 25.9-118.8-141.1 150.9 -8.4 8.7 -9.5 20 20 A L E -B 84 0B 50 -2,-0.3 64,-0.1 64,-0.2 4,-0.0 -0.782 13.4-147.7 -91.5 123.0 -9.2 7.0 -6.1 21 21 A E S S+ 0 0 108 62,-0.9 -1,-0.1 -2,-0.5 63,-0.1 0.827 84.5 7.0 -57.2 -33.2 -12.8 7.7 -4.8 22 22 A K S S- 0 0 152 61,-0.2 61,-0.1 -3,-0.0 -1,-0.1 -0.987 90.8 -87.6-148.8 155.5 -11.4 7.6 -1.2 23 23 A P - 0 0 82 0, 0.0 -17,-0.1 0, 0.0 -16,-0.1 -0.179 60.2 -79.7 -63.4 157.3 -7.9 7.3 0.5 24 24 A L - 0 0 24 -15,-0.2 -15,-0.1 -18,-0.1 58,-0.1 -0.402 54.4-114.4 -59.1 113.0 -6.4 3.9 1.3 25 25 A P - 0 0 105 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.224 31.6-115.1 -52.7 134.0 -8.1 2.5 4.5 26 26 A E + 0 0 165 -3,-0.1 2,-0.3 -17,-0.0 -19,-0.0 -0.420 39.7 177.3 -72.4 143.9 -5.7 2.2 7.4 27 27 A V - 0 0 76 -2,-0.1 2,-0.1 51,-0.0 53,-0.0 -0.994 26.1-115.8-148.0 151.4 -4.9 -1.4 8.7 28 28 A S - 0 0 104 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.471 25.2-153.8 -86.5 158.9 -2.7 -3.0 11.4 29 29 A V - 0 0 93 -2,-0.1 2,-0.5 49,-0.0 48,-0.1 -0.939 7.5-138.2-131.0 154.4 0.2 -5.4 10.7 30 30 A T E +D 76 0C 85 46,-0.6 45,-1.0 -2,-0.3 46,-0.6 -0.956 23.4 177.8-119.5 124.2 1.9 -8.2 12.7 31 31 A I E -D 74 0C 61 -2,-0.5 2,-0.4 43,-0.2 43,-0.1 -0.847 17.7-148.5-120.9 156.6 5.7 -8.6 12.7 32 32 A R E +D 73 0C 211 41,-1.0 41,-0.9 -2,-0.3 2,-0.3 -0.955 43.6 107.7-130.2 114.3 8.0 -11.1 14.6 33 33 A A - 0 0 34 -2,-0.4 39,-0.1 39,-0.1 -2,-0.0 -0.964 68.1 -57.0-167.5 179.4 11.5 -10.0 15.7 34 34 A Y > - 0 0 162 -2,-0.3 4,-1.7 1,-0.1 3,-0.3 -0.362 39.9-130.8 -68.8 149.5 13.7 -9.1 18.6 35 35 A P H > S+ 0 0 99 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.764 103.5 66.7 -71.9 -26.0 12.6 -6.1 20.8 36 36 A E H 4 S+ 0 0 136 2,-0.2 4,-0.3 1,-0.2 5,-0.0 0.892 110.8 33.2 -62.3 -40.9 16.1 -4.5 20.6 37 37 A I H > S+ 0 0 55 -3,-0.3 4,-3.6 2,-0.2 -1,-0.2 0.829 119.9 51.1 -84.9 -34.1 15.7 -3.8 16.8 38 38 A L H < S+ 0 0 78 -4,-1.7 -2,-0.2 1,-0.2 -1,-0.1 0.860 112.0 47.6 -70.6 -34.4 11.9 -3.2 17.1 39 39 A N T < S+ 0 0 151 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.642 122.3 37.0 -79.2 -15.3 12.5 -0.7 19.9 40 40 A N T 4 S+ 0 0 134 -4,-0.3 -2,-0.2 -5,-0.2 -3,-0.2 0.739 98.6 89.4-103.6 -35.3 15.3 0.9 17.7 41 41 A L < - 0 0 36 -4,-3.6 2,-0.2 1,-0.1 3,-0.0 -0.351 64.3-153.1 -67.4 143.0 13.7 0.6 14.3 42 42 A T > - 0 0 54 1,-0.1 3,-0.7 -2,-0.1 4,-0.3 -0.740 25.0-116.9-116.1 165.5 11.5 3.5 13.2 43 43 A K G > S+ 0 0 168 -2,-0.2 3,-1.9 1,-0.2 -1,-0.1 0.845 110.4 66.5 -69.0 -36.1 8.6 3.8 10.8 44 44 A E G 3 S+ 0 0 183 1,-0.3 -1,-0.2 3,-0.1 -3,-0.0 0.727 95.7 58.8 -59.5 -21.0 10.5 6.1 8.4 45 45 A Q G < S+ 0 0 101 -3,-0.7 2,-0.5 2,-0.1 -1,-0.3 0.637 87.3 92.3 -83.1 -15.1 12.8 3.2 7.7 46 46 A I < - 0 0 46 -3,-1.9 2,-0.7 -4,-0.3 22,-0.1 -0.692 67.5-149.5 -86.2 126.7 9.9 1.1 6.4 47 47 A S B +E 67 0D 51 20,-1.1 20,-0.8 -2,-0.5 2,-0.4 -0.841 26.3 165.2 -98.7 109.9 9.2 1.3 2.6 48 48 A L + 0 0 56 -2,-0.7 -38,-1.3 -40,-0.3 2,-0.3 -0.977 12.5 124.4-131.3 122.3 5.5 0.8 1.8 49 49 A W E -a 10 0A 35 -2,-0.4 16,-0.4 -40,-0.2 2,-0.3 -0.911 41.7-123.3-157.5-178.2 3.8 1.7 -1.5 50 50 A I E -a 11 0A 2 -40,-1.0 -38,-2.0 -2,-0.3 2,-0.7 -0.981 14.5-129.9-139.5 151.0 1.7 0.2 -4.3 51 51 A D E +a 12 0A 30 -2,-0.3 4,-0.2 -40,-0.1 -38,-0.2 -0.874 20.1 177.0-105.7 107.9 2.1 -0.1 -8.1 52 52 A A + 0 0 6 -40,-1.5 -1,-0.1 -2,-0.7 -39,-0.1 0.470 48.9 114.5 -85.7 -2.4 -1.0 1.1 -10.1 53 53 A T S S+ 0 0 69 -41,-0.2 2,-4.0 1,-0.2 3,-0.1 -0.232 82.2 9.3 -65.2 159.4 0.9 0.3 -13.3 54 54 A G S S+ 0 0 81 1,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.067 104.1 115.8 63.5 -45.1 -0.5 -2.4 -15.6 55 55 A K - 0 0 77 -2,-4.0 2,-0.2 -4,-0.2 -1,-0.1 -0.157 55.9-148.5 -54.4 146.1 -3.5 -2.5 -13.3 56 56 A A - 0 0 78 1,-0.2 28,-0.2 -3,-0.1 -1,-0.1 -0.599 32.0 -66.6-112.3 174.2 -6.8 -1.4 -14.9 57 57 A V S S+ 0 0 83 -2,-0.2 2,-0.2 26,-0.1 -1,-0.2 -0.278 92.5 56.5 -62.1 144.8 -9.9 0.3 -13.7 58 58 A G B S-C 84 0B 34 26,-1.0 26,-0.9 -3,-0.1 2,-0.5 -0.588 92.2 -54.9 120.8 176.6 -12.0 -1.6 -11.1 59 59 A E + 0 0 137 24,-0.2 2,-0.3 -2,-0.2 24,-0.2 -0.795 57.9 158.0 -96.8 129.0 -11.5 -3.2 -7.7 60 60 A H - 0 0 124 -2,-0.5 22,-0.5 22,-0.3 2,-0.3 -0.994 37.9-118.3-147.3 151.1 -8.7 -5.8 -7.2 61 61 A T E +F 81 0E 68 -2,-0.3 2,-0.3 20,-0.1 20,-0.2 -0.701 36.7 176.8 -90.3 139.7 -6.6 -7.2 -4.4 62 62 A V E -F 80 0E 18 18,-1.1 18,-1.0 -2,-0.3 2,-0.2 -0.980 26.9-116.0-144.4 155.6 -2.8 -6.7 -4.4 63 63 A K - 0 0 181 -2,-0.3 2,-0.6 16,-0.1 16,-0.1 -0.615 26.1-123.7 -92.4 149.4 0.2 -7.5 -2.3 64 64 A I - 0 0 31 14,-0.3 2,-3.1 -2,-0.2 -14,-0.1 -0.826 14.6-136.4 -94.9 119.2 2.5 -4.8 -0.8 65 65 A Y - 0 0 128 -2,-0.6 -1,-0.1 -16,-0.4 -18,-0.0 -0.308 36.8-174.4 -72.2 62.4 6.2 -5.1 -1.8 66 66 A W - 0 0 102 -2,-3.1 2,-0.4 -18,-0.1 -18,-0.1 -0.236 6.6-163.7 -59.8 146.0 7.2 -4.4 1.8 67 67 A Q B -E 47 0D 113 -20,-0.8 -20,-1.1 2,-0.0 -1,-0.0 -0.994 10.1-174.0-139.1 131.4 11.0 -4.1 2.4 68 68 A L - 0 0 39 -2,-0.4 2,-1.9 4,-0.1 4,-0.2 -0.981 21.6-142.7-125.6 121.9 12.9 -4.3 5.8 69 69 A P S S+ 0 0 92 0, 0.0 2,-0.2 0, 0.0 -23,-0.0 -0.338 79.9 39.7 -82.2 61.0 16.8 -3.5 6.0 70 70 A A S S- 0 0 68 -2,-1.9 -2,-0.1 2,-0.1 2,-0.1 -0.777 109.3 -57.0-166.8-148.3 17.5 -6.2 8.6 71 71 A G S S+ 0 0 72 -2,-0.2 2,-0.4 2,-0.0 0, 0.0 -0.374 79.0 133.8-113.9 50.1 16.6 -9.8 9.7 72 72 A I - 0 0 21 -4,-0.2 2,-0.3 -39,-0.1 -2,-0.1 -0.827 39.2-153.9-106.1 141.1 12.8 -9.3 10.1 73 73 A E E -D 32 0C 152 -41,-0.9 -41,-1.0 -2,-0.4 2,-0.7 -0.786 19.8-116.8-111.5 155.0 10.1 -11.7 8.7 74 74 A M E -D 31 0C 79 -2,-0.3 -43,-0.2 1,-0.2 3,-0.1 -0.809 19.5-163.0 -94.6 117.3 6.5 -11.0 7.6 75 75 A V E - 0 0 77 -45,-1.0 2,-0.3 -2,-0.7 -1,-0.2 0.995 54.0 -67.5 -59.8 -72.8 4.0 -12.9 9.8 76 76 A S E +D 30 0C 66 -46,-0.6 -46,-0.6 1,-0.3 -1,-0.2 -0.934 69.7 7.5-176.9 157.2 0.9 -12.6 7.5 77 77 A I + 0 0 103 -2,-0.3 -1,-0.3 -3,-0.1 -47,-0.3 0.213 21.4 141.0 59.0 173.8 -1.6 -10.1 6.1 78 78 A P - 0 0 34 0, 0.0 -14,-0.3 0, 0.0 2,-0.2 0.577 31.1-170.1-100.7 161.9 -2.9 -7.5 5.4 79 79 A D - 0 0 110 -16,-0.1 2,-0.4 -2,-0.1 -16,-0.1 -0.654 14.6-136.6-101.5 156.1 -4.4 -7.3 2.0 80 80 A V E +F 62 0E 33 -18,-1.0 -18,-1.1 -2,-0.2 2,-0.4 -0.938 20.2 177.2-119.1 138.6 -5.7 -4.1 0.3 81 81 A T E +F 61 0E 69 -2,-0.4 2,-0.2 -20,-0.2 -20,-0.1 -0.981 14.5 145.1-142.3 126.6 -8.9 -3.7 -1.7 82 82 A Y - 0 0 33 -22,-0.5 2,-0.5 -2,-0.4 -22,-0.3 -0.801 44.2-102.6-145.4-173.9 -10.3 -0.5 -3.2 83 83 A T - 0 0 35 -2,-0.2 -62,-0.9 -24,-0.2 2,-0.4 -0.935 26.0-158.9-126.2 112.7 -12.2 0.9 -6.2 84 84 A L E -BC 20 58B 13 -26,-0.9 -26,-1.0 -2,-0.5 2,-0.3 -0.718 16.1-179.8 -91.1 136.0 -10.3 2.7 -9.1 85 85 A K E -B 19 0B 104 -66,-1.8 -66,-2.9 -2,-0.4 2,-0.1 -0.903 29.9 -96.8-133.1 161.4 -12.4 5.0 -11.3 86 86 A A E -B 18 0B 61 -2,-0.3 -68,-0.3 -68,-0.2 -69,-0.1 -0.426 50.9 -88.8 -77.3 151.3 -11.7 7.3 -14.3 87 87 A K - 0 0 101 -70,-3.7 2,-1.9 1,-0.1 -1,-0.1 -0.363 32.4-130.1 -61.3 132.5 -11.1 11.0 -14.0 88 88 A E - 0 0 170 -2,-0.1 -1,-0.1 -3,-0.1 -70,-0.0 -0.433 27.7-157.5 -84.2 65.7 -14.3 13.0 -14.1 89 89 A D - 0 0 92 -2,-1.9 3,-0.2 1,-0.2 4,-0.1 -0.211 15.8-178.3 -46.4 110.0 -13.0 15.5 -16.7 90 90 A P S S+ 0 0 106 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 0.730 75.0 68.7 -86.1 -24.2 -15.2 18.6 -16.2 91 91 A L S S- 0 0 159 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.726 97.0-145.2 -66.2 -22.4 -13.6 20.6 -19.1 92 92 A E + 0 0 102 -3,-0.2 3,-0.1 1,-0.0 0, 0.0 0.585 40.1 151.8 62.5 138.6 -15.2 18.1 -21.5 93 93 A H + 0 0 182 1,-0.3 4,-0.2 -4,-0.1 -1,-0.0 0.272 42.6 83.2-159.0 -56.0 -13.3 17.1 -24.7 94 94 A H S S+ 0 0 97 2,-0.1 -1,-0.3 0, 0.0 3,-0.1 -0.097 81.6 35.6 -60.6 161.6 -14.2 13.6 -26.0 95 95 A H S S- 0 0 137 1,-0.1 2,-0.3 -3,-0.1 -2,-0.0 0.884 96.9 -98.6 56.7 107.3 -17.2 13.0 -28.2 96 96 A H S S- 0 0 182 2,-0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.358 85.7 -30.9 -57.3 112.6 -17.9 16.0 -30.6 97 97 A H 0 0 172 -2,-0.3 -4,-0.0 -4,-0.2 0, 0.0 0.295 360.0 360.0 57.2 165.7 -20.6 18.1 -28.8 98 98 A H 0 0 202 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 -0.954 360.0 360.0-169.7 360.0 -23.3 16.6 -26.6