==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 28-SEP-10 2L40 . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR B.CHRISTEN,F.F.DAMBERGER,D.R.PEREZ,S.HORNEMANN,K.WUTHRICH . 114 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7510.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 61.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 42.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 119 A G 0 0 128 0, 0.0 2,-0.3 0, 0.0 7,-0.1 0.000 360.0 360.0 360.0 154.5 8.6 -16.0 6.9 2 120 A S - 0 0 86 5,-0.4 7,-0.3 8,-0.1 8,-0.2 -0.935 360.0-166.5-141.5 169.6 6.0 -16.6 4.3 3 121 A V > + 0 0 102 -2,-0.3 3,-2.1 5,-0.2 5,-0.2 0.000 38.5 147.8-134.3 24.6 6.0 -16.6 0.5 4 122 A V T 3 S- 0 0 94 1,-0.3 -1,-0.0 2,-0.2 0, 0.0 0.684 85.9 -5.5 -42.2 -49.9 2.1 -16.5 0.4 5 123 A G T 3 S- 0 0 23 -3,-0.0 -1,-0.3 59,-0.0 62,-0.1 -0.155 139.3 -45.5-134.3 33.2 1.8 -14.5 -2.9 6 124 A G S < S+ 0 0 36 -3,-2.1 2,-0.3 4,-0.0 4,-0.2 0.278 97.3 131.7 123.9 -1.7 5.6 -13.7 -3.5 7 125 A L + 0 0 16 1,-0.2 2,-2.6 2,-0.1 -5,-0.4 0.200 19.1 127.1 -83.3 16.4 6.5 -12.7 0.1 8 126 A G S S+ 0 0 59 1,-0.3 -1,-0.2 -2,-0.3 -5,-0.2 -0.272 96.1 4.5 -75.2 53.0 9.7 -14.8 0.5 9 127 A G S S+ 0 0 39 -2,-2.6 -1,-0.3 -7,-0.3 -2,-0.1 0.013 103.1 124.8 149.9 -15.5 11.8 -11.8 1.5 10 128 A Y - 0 0 26 -4,-0.2 36,-0.3 -8,-0.2 -1,-0.3 -0.044 45.7-148.1 -59.6 168.0 9.1 -9.1 1.6 11 129 A M E -A 45 0A 81 34,-3.2 34,-2.1 -3,-0.1 2,-0.4 -0.804 5.5-127.7-141.3 165.3 8.6 -7.1 4.8 12 130 A L E -A 44 0A 61 -2,-0.3 32,-0.2 32,-0.2 2,-0.2 -0.992 17.2-133.1-134.2 121.3 5.8 -5.4 6.6 13 131 A G - 0 0 1 30,-2.9 3,-0.1 -2,-0.4 83,-0.0 -0.471 31.3-109.9 -67.1 142.4 5.6 -1.8 7.8 14 132 A S - 0 0 100 1,-0.2 29,-0.3 -2,-0.2 -1,-0.1 -0.069 63.0 -53.2 -58.5 170.4 4.4 -1.2 11.4 15 133 A A - 0 0 76 27,-0.1 27,-0.2 1,-0.1 -1,-0.2 -0.282 69.5-172.3 -54.8 128.1 1.0 0.5 11.9 16 134 A M - 0 0 40 25,-2.8 2,-0.4 -3,-0.1 -1,-0.1 -0.119 24.9 -93.0-103.7-160.2 1.0 3.7 9.8 17 135 A S - 0 0 96 -2,-0.1 0, 0.0 78,-0.0 0, 0.0 -0.987 38.3-107.5-121.2 142.2 -1.4 6.6 9.6 18 136 A R - 0 0 140 -2,-0.4 23,-0.1 1,-0.1 73,-0.0 -0.530 38.6-142.3 -61.3 115.1 -4.2 6.9 7.0 19 137 A P - 0 0 25 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.056 18.0-106.5 -63.4 178.1 -3.2 9.6 4.4 20 138 A M - 0 0 101 2,-0.0 2,-0.3 74,-0.0 0, 0.0 -0.924 34.8-176.1-113.0 136.4 -5.7 12.0 2.8 21 139 A I - 0 0 21 -2,-0.4 2,-0.4 8,-0.1 3,-0.1 -0.997 11.7-163.1-141.0 137.7 -6.8 11.5 -0.8 22 140 A H + 0 0 128 -2,-0.3 7,-0.0 1,-0.1 -2,-0.0 -0.751 19.8 163.5-130.8 77.3 -9.0 13.8 -2.9 23 141 A F - 0 0 52 -2,-0.4 -1,-0.1 2,-0.1 3,-0.1 0.717 47.3-134.0 -65.9 -25.3 -10.4 12.2 -6.0 24 142 A G + 0 0 66 1,-0.4 2,-0.3 -3,-0.1 -1,-0.1 0.277 65.6 124.0 83.9 -4.4 -13.0 15.0 -6.1 25 143 A N > - 0 0 75 1,-0.1 4,-1.9 2,-0.0 -1,-0.4 -0.673 66.7-132.4 -69.2 142.9 -16.1 12.9 -6.8 26 144 A D T 4 S+ 0 0 157 -2,-0.3 4,-0.2 1,-0.2 -1,-0.1 0.397 108.7 45.0 -84.0 1.2 -18.4 13.8 -3.9 27 145 A W T > S+ 0 0 81 3,-0.1 4,-2.4 2,-0.1 -1,-0.2 0.652 108.3 56.8 -98.5 -32.0 -19.0 10.1 -3.4 28 146 A E H > S+ 0 0 35 2,-0.2 4,-1.7 1,-0.2 -2,-0.2 0.900 105.8 49.3 -68.6 -39.9 -15.3 9.1 -3.7 29 147 A D H >X S+ 0 0 41 -4,-1.9 4,-2.1 1,-0.2 3,-0.6 0.982 116.4 40.7 -64.0 -53.9 -14.1 11.3 -0.9 30 148 A R H 3> S+ 0 0 142 1,-0.2 4,-3.2 2,-0.2 5,-0.3 0.889 108.2 64.2 -58.2 -40.2 -16.8 10.1 1.6 31 149 A Y H 3X S+ 0 0 78 -4,-2.4 4,-1.0 1,-0.2 -1,-0.2 0.860 107.6 41.3 -59.4 -39.4 -16.3 6.6 0.3 32 150 A Y H XX S+ 0 0 3 -4,-1.7 4,-1.0 -3,-0.6 3,-0.8 0.989 117.2 45.9 -62.7 -63.4 -12.7 6.6 1.6 33 151 A R H 3< S+ 0 0 136 -4,-2.1 3,-0.3 1,-0.3 -2,-0.2 0.815 116.3 45.2 -55.5 -38.0 -13.4 8.4 4.9 34 152 A E H 3< S+ 0 0 123 -4,-3.2 -1,-0.3 1,-0.2 3,-0.2 0.793 120.1 37.2 -74.1 -33.6 -16.5 6.2 5.8 35 153 A N H X< S+ 0 0 28 -4,-1.0 3,-2.5 -3,-0.8 -1,-0.2 0.410 77.2 119.8-103.3 -1.6 -15.0 2.8 4.9 36 154 A M G >< + 0 0 44 -4,-1.0 3,-1.9 1,-0.3 -1,-0.2 0.642 64.2 64.6 -51.2 -32.8 -11.4 3.3 6.1 37 155 A Y G 3 S+ 0 0 184 1,-0.3 -1,-0.3 -3,-0.2 4,-0.1 0.820 92.9 66.0 -59.7 -30.9 -11.3 0.4 8.8 38 156 A R G < S+ 0 0 94 -3,-2.5 -1,-0.3 2,-0.1 -2,-0.2 0.491 92.1 79.9 -66.6 -8.0 -11.8 -2.0 5.9 39 157 A Y S < S- 0 0 16 -3,-1.9 2,-0.1 -4,-0.2 30,-0.0 -0.901 91.3-107.0-113.7 137.7 -8.3 -1.0 4.6 40 158 A P - 0 0 34 0, 0.0 -2,-0.1 0, 0.0 29,-0.0 -0.339 17.0-155.4 -63.2 132.1 -5.0 -2.3 6.0 41 159 A N S S+ 0 0 52 -4,-0.1 -25,-2.8 -2,-0.1 2,-0.3 0.233 79.0 65.1 -91.6 11.7 -3.1 0.4 8.1 42 160 A Q S S- 0 0 85 -27,-0.2 2,-0.4 -26,-0.1 -27,-0.1 -0.964 73.2-145.7-131.0 146.1 0.2 -1.4 7.3 43 161 A V - 0 0 0 -2,-0.3 -30,-2.9 -29,-0.3 2,-0.3 -0.922 7.3-139.8-116.7 143.7 1.9 -1.9 3.8 44 162 A Y E +A 12 0A 81 -2,-0.4 21,-0.3 17,-0.3 2,-0.3 -0.798 34.1 154.6 -95.3 144.9 4.0 -4.9 2.6 45 163 A Y E -A 11 0A 20 -34,-2.1 -34,-3.2 -2,-0.3 13,-0.1 -0.900 40.2-103.4-153.0 172.9 7.2 -4.2 0.6 46 164 A R - 0 0 119 -36,-0.3 -36,-0.2 -2,-0.3 15,-0.1 -0.808 49.2 -87.6 -99.8 159.1 10.6 -5.8 -0.3 47 165 A P - 0 0 39 0, 0.0 2,-1.2 0, 0.0 -1,-0.1 -0.151 45.0-106.1 -60.5 154.0 13.9 -4.7 1.3 48 166 A V + 0 0 16 2,-0.1 2,-0.3 55,-0.1 4,-0.0 -0.735 59.9 150.2 -94.0 92.1 15.8 -1.8 -0.5 49 167 A D - 0 0 105 -2,-1.2 2,-2.8 58,-0.0 3,-0.3 -0.891 62.2 -19.1-121.5 156.5 18.7 -3.4 -2.2 50 168 A Q S S- 0 0 174 -2,-0.3 -2,-0.1 1,-0.2 0, 0.0 -0.229 135.0 -15.4 45.5 -52.4 20.5 -2.4 -5.5 51 169 A A + 0 0 43 -2,-2.8 -1,-0.2 2,-0.1 -3,-0.0 0.493 64.6 162.3-138.0 -79.5 17.8 -0.1 -6.8 52 170 A S + 0 0 22 -3,-0.3 -2,-0.1 1,-0.1 5,-0.1 0.623 28.7 177.0 45.8 24.8 14.3 -0.5 -5.2 53 171 A N > - 0 0 71 1,-0.1 4,-1.8 4,-0.1 3,-0.4 -0.094 47.2 -96.5 -53.5 157.1 13.4 2.9 -6.7 54 172 A Q H > S+ 0 0 90 1,-0.2 4,-3.2 2,-0.2 5,-0.4 0.752 118.2 64.8 -58.5 -30.4 9.8 4.0 -6.0 55 173 A N H > S+ 0 0 123 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.970 114.1 27.8 -52.4 -66.4 8.5 2.7 -9.4 56 174 A N H > S+ 0 0 77 -3,-0.4 4,-2.1 2,-0.2 -1,-0.2 0.718 122.4 56.2 -72.8 -18.8 9.2 -1.0 -8.9 57 175 A F H X S+ 0 0 8 -4,-1.8 4,-2.6 2,-0.2 -2,-0.2 0.925 110.3 40.9 -80.4 -48.3 8.8 -0.6 -5.1 58 176 A V H X S+ 0 0 19 -4,-3.2 4,-3.0 2,-0.2 5,-0.3 0.874 114.3 56.5 -67.1 -38.2 5.3 0.9 -5.2 59 177 A H H X S+ 0 0 120 -4,-2.0 4,-2.4 -5,-0.4 -2,-0.2 0.973 112.2 39.6 -51.8 -61.3 4.5 -1.7 -7.9 60 178 A D H X S+ 0 0 34 -4,-2.1 4,-2.6 1,-0.2 5,-0.3 0.872 116.4 54.1 -62.8 -34.5 5.5 -4.6 -5.7 61 179 A a H X S+ 0 0 0 -4,-2.6 4,-3.1 2,-0.2 5,-0.3 0.963 112.9 38.4 -59.8 -60.2 3.8 -2.8 -2.7 62 180 A V H X S+ 0 0 21 -4,-3.0 4,-2.0 2,-0.2 5,-0.3 0.902 117.8 53.4 -63.0 -37.1 0.4 -2.3 -4.2 63 181 A N H X S+ 0 0 60 -4,-2.4 4,-2.3 -5,-0.3 -2,-0.2 0.966 118.9 31.6 -58.1 -60.6 0.7 -5.8 -5.9 64 182 A I H X S+ 0 0 2 -4,-2.6 4,-2.9 2,-0.2 -2,-0.2 0.886 118.0 52.8 -73.3 -42.0 1.5 -7.7 -2.7 65 183 A T H < S+ 0 0 2 -4,-3.1 4,-0.2 -21,-0.3 5,-0.2 0.943 114.1 43.3 -64.7 -45.4 -0.5 -5.6 -0.2 66 184 A I H >X>S+ 0 0 22 -4,-2.0 4,-2.8 -5,-0.3 3,-2.2 0.979 113.3 53.8 -59.8 -52.6 -3.7 -5.9 -2.2 67 185 A K H 3<>S+ 0 0 62 -4,-2.3 5,-1.0 -5,-0.3 4,-0.5 0.894 109.5 48.4 -48.1 -45.3 -2.9 -9.6 -2.8 68 186 A Q T 3<5S+ 0 0 33 -4,-2.9 -1,-0.3 1,-0.2 -2,-0.2 0.240 124.7 26.8 -94.6 19.0 -2.6 -10.2 1.0 69 187 A H T <45S+ 0 0 26 -3,-2.2 -1,-0.2 -4,-0.2 -2,-0.2 0.397 133.2 31.3-138.9 -5.2 -5.9 -8.4 2.1 70 188 A T T >X5S+ 0 0 14 -4,-2.8 4,-3.0 -5,-0.2 3,-1.4 0.730 121.9 41.9-114.5 -52.3 -8.0 -8.8 -1.1 71 189 A V T 34>S+ 0 0 34 -3,-1.4 5,-2.7 5,-0.0 4,-1.0 0.315 102.7 72.3-153.5 -42.6 -10.4 -12.4 1.8 74 192 A T T <5S+ 0 0 51 -4,-3.0 -3,-0.1 1,-0.3 -2,-0.1 0.589 112.8 36.7 -62.1 -13.3 -12.4 -12.1 -1.5 75 193 A T T 45S+ 0 0 114 -5,-0.3 -1,-0.3 -4,-0.2 -3,-0.1 0.663 112.9 58.6-101.0 -34.9 -12.4 -15.9 -1.4 76 194 A K T 45S- 0 0 156 1,-0.1 -2,-0.2 -5,-0.1 3,-0.1 0.397 135.1 -67.7 -86.4 6.0 -12.7 -16.2 2.5 77 195 A G T <5S+ 0 0 70 -4,-1.0 -3,-0.2 1,-0.8 2,-0.2 0.284 111.3 95.5 121.7 -9.1 -16.0 -14.3 2.7 78 196 A E < - 0 0 92 -5,-2.7 -1,-0.8 -8,-0.1 -8,-0.0 -0.417 50.9-167.8 -79.4-177.2 -15.0 -10.9 1.8 79 197 A N - 0 0 121 -2,-0.2 -5,-0.1 -3,-0.1 -9,-0.1 -0.223 15.6-149.9-169.1 56.6 -15.5 -9.8 -1.8 80 198 A F - 0 0 21 -10,-0.2 -6,-0.0 1,-0.1 -2,-0.0 -0.153 16.7-136.1 -44.5 110.8 -13.6 -6.6 -2.3 81 199 A T > - 0 0 69 1,-0.1 4,-2.8 4,-0.0 3,-0.2 -0.281 17.2-114.5 -66.4 154.7 -15.4 -4.6 -4.9 82 200 A E H > S+ 0 0 133 1,-0.2 4,-2.7 2,-0.2 5,-0.1 0.882 118.1 53.4 -61.2 -41.3 -13.5 -2.7 -7.7 83 201 A T H > S+ 0 0 47 2,-0.2 4,-0.9 1,-0.2 -1,-0.2 0.880 110.2 46.7 -61.9 -37.5 -14.7 0.6 -6.3 84 202 A D H >> S+ 0 0 14 -3,-0.2 4,-1.9 1,-0.2 3,-0.9 0.955 113.1 49.5 -71.0 -44.6 -13.3 -0.3 -2.8 85 203 A V H 3X S+ 0 0 29 -4,-2.8 4,-2.9 1,-0.2 -2,-0.2 0.856 99.9 65.3 -55.6 -43.6 -10.0 -1.5 -4.4 86 204 A K H 3X S+ 0 0 82 -4,-2.7 4,-0.9 1,-0.2 -1,-0.2 0.838 107.2 43.1 -51.8 -34.7 -9.8 1.8 -6.4 87 205 A M H XX S+ 0 0 0 -3,-0.9 4,-2.6 -4,-0.9 3,-0.5 0.936 110.8 54.1 -75.7 -50.2 -9.4 3.5 -3.0 88 206 A M H 3X S+ 0 0 0 -4,-1.9 4,-3.1 1,-0.2 5,-0.4 0.857 100.3 62.1 -52.7 -41.8 -7.0 0.8 -1.7 89 207 A E H 3X S+ 0 0 83 -4,-2.9 4,-2.1 1,-0.2 -1,-0.2 0.922 113.2 34.9 -50.9 -49.4 -4.7 1.3 -4.7 90 208 A R H X S+ 0 0 17 -4,-2.4 4,-3.1 -5,-0.3 3,-0.5 0.983 104.3 44.3 -54.7 -55.3 15.4 4.9 0.9 105 223 A Q H 3X S+ 0 0 113 -4,-1.9 4,-2.3 1,-0.2 -2,-0.2 0.872 111.8 52.8 -54.5 -43.5 17.3 7.0 3.4 106 224 A A H 3< S+ 0 0 61 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.835 116.3 39.8 -66.2 -33.6 18.6 3.9 5.3 107 225 A Y H XX S+ 0 0 60 -4,-2.4 3,-1.9 -3,-0.5 4,-0.6 0.953 114.2 55.2 -70.5 -51.4 19.9 2.6 2.0 108 226 A Y H >< S+ 0 0 133 -4,-3.1 3,-0.9 1,-0.3 4,-0.2 0.744 91.3 68.4 -58.4 -42.5 21.1 6.0 0.8 109 227 A D T 3< S+ 0 0 83 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.1 0.530 107.7 42.4 -61.1 -9.7 23.3 6.8 3.7 110 228 A G T <4 S+ 0 0 64 -3,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.597 115.5 48.1-103.3 -20.2 25.5 4.0 2.4 111 229 A R S << S+ 0 0 131 -3,-0.9 -2,-0.2 -4,-0.6 -3,-0.1 0.090 84.1 170.8-101.6 16.2 25.3 5.0 -1.3 112 230 A R + 0 0 172 -4,-0.2 -3,-0.1 1,-0.2 -4,-0.0 -0.063 29.2 169.9 -57.0 123.7 26.0 8.7 -0.7 113 231 A S 0 0 115 -5,-0.1 -1,-0.2 0, 0.0 -5,-0.0 -0.052 360.0 360.0-103.3 26.5 26.6 11.0 -3.7 114 232 A S 0 0 160 -5,-0.0 -2,-0.1 0, 0.0 -5,-0.1 0.843 360.0 360.0 59.4 360.0 26.3 13.8 -1.1