==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-FEB-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 29-SEP-10 2L42 . COMPND 2 MOLECULE: DNA-BINDING PROTEIN RAP1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR W.ZHANG,J.ZHANG,X.TU . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7637.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 43.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 205 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 98.3 -2.0 -18.4 -16.2 2 2 A K + 0 0 212 1,-0.1 2,-0.2 2,-0.0 0, 0.0 0.748 360.0 79.2-113.1 -49.5 -5.6 -18.1 -17.2 3 3 A K S S- 0 0 158 1,-0.1 2,-0.9 0, 0.0 3,-0.2 -0.470 78.0-131.8 -67.7 128.2 -7.6 -18.0 -13.9 4 4 A E S S- 0 0 157 -2,-0.2 -1,-0.1 1,-0.2 79,-0.1 -0.736 75.2 -17.0 -87.5 105.3 -7.5 -14.6 -12.2 5 5 A Q S S+ 0 0 80 -2,-0.9 -1,-0.2 4,-0.0 3,-0.1 0.852 71.7 150.1 67.0 110.1 -6.6 -15.1 -8.5 6 6 A V + 0 0 101 1,-0.2 2,-0.5 -3,-0.2 -2,-0.1 0.570 46.1 81.7-133.3 -51.3 -7.1 -18.7 -7.2 7 7 A S S S- 0 0 116 2,-0.1 -1,-0.2 3,-0.0 -2,-0.0 -0.524 104.8 -14.8 -68.6 114.8 -4.7 -19.4 -4.3 8 8 A G S S- 0 0 30 -2,-0.5 0, 0.0 -3,-0.1 0, 0.0 0.183 112.1 -34.7 75.1 160.8 -6.1 -17.9 -1.1 9 9 A P - 0 0 78 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 -0.264 48.7-147.6 -53.8 128.2 -9.0 -15.4 -0.8 10 10 A P S S+ 0 0 68 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.745 82.6 36.5 -69.4 -24.3 -8.9 -12.9 -3.7 11 11 A L S S+ 0 0 91 1,-0.2 31,-0.1 31,-0.1 27,-0.0 -0.872 100.5 35.4-127.8 161.1 -10.3 -10.1 -1.4 12 12 A S + 0 0 58 -2,-0.3 -1,-0.2 26,-0.2 31,-0.1 0.917 64.5 127.3 61.6 102.2 -9.8 -9.1 2.2 13 13 A N - 0 0 47 -3,-0.1 2,-0.2 51,-0.0 -2,-0.1 0.268 65.1 -57.3-142.7 -83.4 -6.2 -9.7 3.4 14 14 A M + 0 0 99 46,-0.0 50,-0.5 51,-0.0 49,-0.4 -0.734 49.0 167.1-179.4 127.0 -4.2 -7.0 5.1 15 15 A K - 0 0 15 29,-1.1 2,-0.3 -2,-0.2 46,-0.2 -0.977 7.8-175.6-145.9 156.1 -3.1 -3.4 4.2 16 16 A F B -A 60 0A 39 44,-1.7 44,-1.6 -2,-0.3 2,-0.6 -0.920 7.6-163.1-157.4 126.5 -1.6 -0.4 5.9 17 17 A Y E +b 47 0B 3 29,-0.6 31,-1.4 -2,-0.3 2,-0.3 -0.910 30.0 139.8-118.5 106.5 -0.8 3.1 4.6 18 18 A L E -b 48 0B 28 -2,-0.6 31,-0.2 29,-0.1 29,-0.1 -0.755 37.9-145.6-148.7 95.8 1.6 5.3 6.6 19 19 A N - 0 0 32 29,-1.2 39,-0.1 -2,-0.3 -2,-0.0 -0.213 13.5-133.4 -58.8 148.9 4.2 7.4 4.9 20 20 A R - 0 0 151 31,-0.1 32,-0.4 29,-0.1 -1,-0.1 0.956 43.5 -90.3 -68.0 -90.5 7.6 7.8 6.6 21 21 A D S S+ 0 0 52 30,-0.2 30,-0.1 3,-0.1 32,-0.1 0.140 77.6 127.6 174.4 44.1 8.6 11.5 6.6 22 22 A A S S- 0 0 62 2,-0.1 29,-0.1 1,-0.0 -3,-0.0 0.377 72.9-121.9 -92.9 3.3 10.6 12.3 3.4 23 23 A D S S+ 0 0 120 0, 0.0 2,-0.2 0, 0.0 28,-0.0 0.612 88.5 23.5 66.0 11.8 8.3 15.2 2.5 24 24 A A + 0 0 68 3,-0.1 -3,-0.1 4,-0.0 -2,-0.1 -0.845 53.8 135.6 168.6 156.7 7.7 13.4 -0.9 25 25 A H S S- 0 0 147 -2,-0.2 3,-0.1 -6,-0.0 0, 0.0 -0.107 79.4 -44.3-174.1 -74.3 7.8 10.0 -2.6 26 26 A D S S- 0 0 98 1,-0.3 2,-0.3 47,-0.0 46,-0.0 0.398 104.2 -16.2-143.6 -62.2 5.0 9.0 -4.9 27 27 A S + 0 0 31 1,-0.1 -1,-0.3 -3,-0.0 -3,-0.1 -0.983 40.7 168.7-153.3 159.3 1.5 9.8 -3.5 28 28 A L S S+ 0 0 65 -2,-0.3 4,-0.3 -3,-0.1 -1,-0.1 0.502 87.8 16.3-135.7 -62.0 -0.3 10.7 -0.2 29 29 A N S > S+ 0 0 119 2,-0.1 3,-0.7 1,-0.1 4,-0.4 0.784 122.3 60.0 -89.2 -32.4 -3.9 11.8 -0.7 30 30 A D T >> S+ 0 0 110 1,-0.2 3,-1.8 2,-0.2 4,-1.4 0.852 94.7 63.6 -64.2 -36.4 -4.2 10.5 -4.2 31 31 A I H 3> S+ 0 0 1 1,-0.3 4,-3.0 2,-0.2 5,-0.3 0.802 87.5 72.1 -59.1 -28.4 -3.5 6.9 -3.1 32 32 A D H <4 S+ 0 0 57 -3,-0.7 4,-0.5 -4,-0.3 -1,-0.3 0.824 102.6 43.1 -55.6 -31.8 -6.7 7.2 -1.0 33 33 A Q H <> S+ 0 0 150 -3,-1.8 4,-0.6 -4,-0.4 3,-0.3 0.914 115.2 45.1 -81.2 -47.0 -8.5 7.0 -4.4 34 34 A L H X S+ 0 0 51 -4,-1.4 4,-0.5 1,-0.2 3,-0.2 0.784 118.6 46.1 -67.6 -25.6 -6.4 4.2 -5.9 35 35 A A H X S+ 0 0 0 -4,-3.0 4,-2.5 -5,-0.2 -1,-0.2 0.630 91.5 81.0 -89.7 -16.2 -6.7 2.3 -2.6 36 36 A R H > S+ 0 0 152 -4,-0.5 4,-1.2 -5,-0.3 -1,-0.2 0.836 91.9 53.4 -57.6 -32.3 -10.4 3.0 -2.3 37 37 A L H < S+ 0 0 121 -4,-0.6 3,-0.3 -3,-0.2 4,-0.3 0.956 116.2 35.3 -67.2 -52.1 -10.9 0.0 -4.7 38 38 A I H <>S+ 0 0 18 -4,-0.5 5,-0.6 1,-0.2 4,-0.4 0.672 112.8 63.0 -76.3 -16.8 -8.8 -2.4 -2.6 39 39 A R H <5S+ 0 0 113 -4,-2.5 3,-0.3 1,-0.2 -1,-0.2 0.801 106.7 43.0 -76.1 -29.6 -10.1 -0.8 0.6 40 40 A A T <5S+ 0 0 78 -4,-1.2 -1,-0.2 -3,-0.3 -2,-0.2 0.433 91.3 87.0 -94.4 -1.9 -13.7 -1.8 -0.3 41 41 A N T 5S- 0 0 49 -4,-0.3 -1,-0.2 -3,-0.2 -2,-0.1 0.790 116.9 -89.4 -67.3 -28.4 -12.6 -5.3 -1.4 42 42 A G T 5S+ 0 0 43 -4,-0.4 -3,-0.1 -3,-0.3 -2,-0.1 0.187 98.8 94.3 137.7 -14.1 -12.9 -6.6 2.2 43 43 A G S - 0 0 3 -2,-0.4 3,-2.1 -46,-0.2 2,-0.1 -0.537 38.4 -75.2 -93.9 161.5 0.9 -4.4 0.8 62 62 A P T 3 S+ 0 0 16 0, 0.0 -47,-0.1 0, 0.0 -1,-0.1 -0.324 118.3 2.9 -58.2 128.4 -1.9 -7.0 0.5 63 63 A Y T 3 S+ 0 0 127 -49,-0.4 2,-0.7 1,-0.2 -48,-0.1 0.490 95.6 142.0 72.9 3.8 -0.8 -10.5 1.7 64 64 A N < - 0 0 38 -3,-2.1 -1,-0.2 -50,-0.5 -51,-0.0 -0.693 39.0-152.5 -82.9 113.5 2.6 -9.0 2.6 65 65 A H + 0 0 147 -2,-0.7 -4,-0.1 -3,-0.1 -51,-0.0 -0.178 61.9 41.5 -75.7 173.7 3.9 -10.6 5.8 66 66 A T - 0 0 66 1,-0.1 -1,-0.0 2,-0.1 0, 0.0 0.912 62.5-149.2 49.6 105.0 6.2 -8.9 8.3 67 67 A N S S+ 0 0 80 1,-0.2 -1,-0.1 -7,-0.1 -2,-0.1 0.242 78.9 91.1 -84.2 13.2 5.2 -5.3 8.8 68 68 A L S S+ 0 0 119 2,-0.0 -1,-0.2 -10,-0.0 -2,-0.1 0.960 82.2 48.3 -73.7 -53.5 8.9 -4.4 9.5 69 69 A P S S- 0 0 9 0, 0.0 2,-0.3 0, 0.0 26,-0.1 0.057 82.4-126.1 -74.3-169.8 9.9 -3.5 5.9 70 70 A T B -C 93 0C 33 23,-0.6 23,-2.5 -12,-0.1 2,-0.2 -0.992 13.9-156.1-143.8 150.9 8.0 -1.2 3.5 71 71 A V - 0 0 9 -12,-2.1 -12,-0.2 -2,-0.3 20,-0.2 -0.720 31.8 -88.4-120.9 171.8 6.6 -1.3 -0.0 72 72 A T > - 0 0 23 18,-1.6 3,-1.1 -2,-0.2 4,-0.1 -0.526 24.4-134.4 -80.8 147.8 5.7 1.2 -2.8 73 73 A P T > S+ 0 0 15 0, 0.0 3,-1.7 0, 0.0 4,-0.2 0.858 103.8 67.5 -67.4 -35.9 2.1 2.8 -2.9 74 74 A T T >> S+ 0 0 69 1,-0.3 3,-1.2 2,-0.2 4,-1.1 0.648 72.6 95.6 -59.0 -14.7 1.9 2.2 -6.6 75 75 A Y H <> S+ 0 0 19 -3,-1.1 4,-2.6 1,-0.3 3,-0.4 0.817 75.2 63.3 -46.0 -35.0 1.8 -1.6 -5.7 76 76 A I H <> S+ 0 0 4 -3,-1.7 4,-3.4 1,-0.2 5,-0.4 0.923 97.7 53.2 -57.8 -46.9 -2.0 -1.2 -5.9 77 77 A K H <> S+ 0 0 123 -3,-1.2 4,-0.9 -4,-0.2 5,-0.3 0.808 117.1 39.4 -58.7 -30.4 -1.9 -0.4 -9.6 78 78 A A H X S+ 0 0 25 -4,-1.1 4,-0.8 -3,-0.4 7,-0.3 0.730 118.3 47.2 -90.3 -26.7 0.2 -3.6 -10.1 79 79 A C H < S+ 0 0 20 -4,-2.6 -2,-0.2 -5,-0.2 -3,-0.2 0.787 118.6 40.3 -83.9 -30.4 -1.9 -5.7 -7.6 80 80 A C H < S+ 0 0 71 -4,-3.4 -3,-0.2 -5,-0.2 -2,-0.2 0.800 130.6 27.7 -86.5 -33.3 -5.2 -4.6 -9.0 81 81 A Q H < S+ 0 0 153 -4,-0.9 -3,-0.2 -5,-0.4 -2,-0.2 0.862 135.0 30.3 -94.5 -46.5 -4.1 -4.7 -12.7 82 82 A S S >< S- 0 0 48 -4,-0.8 2,-2.6 -5,-0.3 3,-1.1 0.541 88.6-154.7 -89.7 -8.4 -1.4 -7.4 -12.6 83 83 A N T 3 S- 0 0 37 1,-0.2 -1,-0.2 -7,-0.2 -2,-0.1 -0.418 71.6 -34.9 70.4 -73.4 -3.1 -9.2 -9.7 84 84 A S T 3 S+ 0 0 84 -2,-2.6 -1,-0.2 -3,-0.1 3,-0.2 0.077 103.6 113.6-171.8 36.2 0.2 -10.8 -8.5 85 85 A L S < S+ 0 0 114 -3,-1.1 -2,-0.1 -7,-0.3 3,-0.1 0.006 74.6 57.6-104.3 26.6 2.3 -11.6 -11.5 86 86 A L > + 0 0 77 -8,-0.1 3,-0.5 1,-0.1 -1,-0.2 -0.466 47.4 151.1-156.7 75.2 5.0 -9.0 -10.7 87 87 A N G > S+ 0 0 108 1,-0.2 3,-2.3 -3,-0.2 4,-0.2 0.785 72.0 70.1 -77.9 -27.9 6.7 -9.5 -7.2 88 88 A M G > S+ 0 0 179 1,-0.3 3,-0.7 2,-0.1 -1,-0.2 0.740 92.2 61.9 -60.4 -22.0 9.9 -7.9 -8.4 89 89 A E G < + 0 0 111 -3,-0.5 -1,-0.3 1,-0.2 -17,-0.2 0.432 68.0 102.3 -85.7 2.2 8.0 -4.6 -8.5 90 90 A N G < - 0 0 4 -3,-2.3 -18,-1.6 1,-0.1 -1,-0.2 0.848 62.2-169.5 -50.7 -32.8 7.3 -4.8 -4.7 91 91 A Y < + 0 0 191 -3,-0.7 2,-0.2 -4,-0.2 -1,-0.1 0.839 22.3 169.8 41.6 41.1 10.1 -2.2 -4.6 92 92 A L - 0 0 59 -21,-0.2 -21,-0.3 1,-0.1 -1,-0.2 -0.480 42.1 -97.4 -82.3 153.0 10.1 -2.7 -0.9 93 93 A V B -C 70 0C 58 -23,-2.5 -23,-0.6 -2,-0.2 -1,-0.1 -0.546 52.4-101.5 -72.1 127.9 12.8 -1.4 1.5 94 94 A P - 0 0 84 0, 0.0 -1,-0.1 0, 0.0 -24,-0.1 0.201 18.3-121.5 -44.1 165.3 15.4 -4.1 2.3 95 95 A Y S S+ 0 0 148 1,-0.1 -2,-0.1 -3,-0.1 0, 0.0 0.799 108.3 54.6 -82.3 -32.2 15.5 -6.1 5.5 96 96 A D 0 0 169 1,-0.3 -1,-0.1 0, 0.0 -3,-0.0 0.971 360.0 360.0 -66.0 -56.3 19.0 -5.0 6.5 97 97 A N 0 0 168 0, 0.0 -1,-0.3 0, 0.0 0, 0.0 -0.982 360.0 360.0-123.5 360.0 18.3 -1.2 6.3