==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=17-JUN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 01-OCT-10 2L45 . COMPND 2 MOLECULE: C-TERMINAL ZINC KNUCLE OF THE HIV-NCP7; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.QUINTAL,A.VIEGAS,E.CABRITA,N.FARRELL,S.ERHARDT . 19 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2062.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 6 31.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 251 0, 0.0 2,-0.3 0, 0.0 8,-0.1 0.000 360.0 360.0 360.0 114.8 -5.5 -11.9 5.6 2 2 A G + 0 0 30 1,-0.3 7,-0.3 7,-0.1 0, 0.0 -0.929 360.0 20.2 152.6-120.4 -2.3 -10.4 4.2 3 3 A C - 0 0 23 5,-1.5 -1,-0.3 -2,-0.3 9,-0.1 0.064 64.1-129.0 -59.2 179.8 -1.8 -6.8 2.9 4 4 A W S S+ 0 0 143 -3,-0.1 -1,-0.1 4,-0.0 8,-0.1 0.801 100.0 10.3 -99.8 -48.8 -4.1 -3.9 3.6 5 5 A K S S+ 0 0 91 3,-0.1 -2,-0.0 8,-0.0 8,-0.0 0.621 128.0 51.1-108.9 -22.3 -4.9 -2.6 0.0 6 6 A C S S- 0 0 59 2,-0.2 -4,-0.0 0, 0.0 0, 0.0 0.966 90.4-130.2 -86.7 -61.9 -3.4 -5.3 -2.3 7 7 A G + 0 0 67 1,-0.4 2,-0.3 0, 0.0 -3,-0.0 0.685 66.6 99.8 114.6 33.7 -4.9 -8.6 -1.0 8 8 A K S > S- 0 0 120 3,-0.1 2,-1.6 0, 0.0 -5,-1.5 -0.989 81.6-107.7-144.5 149.9 -1.8 -10.9 -0.6 9 9 A E T 3 S+ 0 0 186 -2,-0.3 -7,-0.1 -7,-0.3 3,-0.1 -0.071 82.0 115.0 -72.0 38.5 0.6 -12.1 2.2 10 10 A G T 3 S- 0 0 53 -2,-1.6 2,-0.2 1,-0.2 -1,-0.2 0.956 84.1 -62.9 -73.3 -51.3 3.4 -9.8 0.8 11 11 A H < - 0 0 75 -3,-0.6 -1,-0.2 2,-0.0 2,-0.2 -0.881 54.9 -76.9-168.7-162.0 3.6 -7.5 3.8 12 12 A Q >> - 0 0 126 -2,-0.2 3,-2.2 -9,-0.1 4,-1.8 -0.593 55.1 -82.8-112.9 175.4 1.7 -4.9 6.0 13 13 A M H 3> S+ 0 0 83 1,-0.3 4,-1.0 2,-0.2 5,-0.1 0.806 124.5 58.4 -57.9 -37.5 0.9 -1.2 5.5 14 14 A K H 34 S+ 0 0 164 1,-0.2 -1,-0.3 2,-0.2 0, 0.0 0.590 117.2 35.8 -66.6 -14.9 4.3 0.1 6.7 15 15 A D H <4 S+ 0 0 127 -3,-2.2 -2,-0.2 0, 0.0 -1,-0.2 0.579 127.8 37.4-109.1 -19.8 5.8 -2.0 3.9 16 16 A C H < + 0 0 6 -4,-1.8 -3,-0.2 1,-0.0 -2,-0.2 0.884 61.0 159.3 -86.5 -77.1 3.0 -1.5 1.4 17 17 A T < + 0 0 101 -4,-1.0 2,-0.7 1,-0.1 -4,-0.1 0.460 26.2 142.5 64.6 8.0 1.7 2.2 1.8 18 18 A E 0 0 128 1,-0.2 -1,-0.1 -5,-0.1 -5,-0.0 0.152 360.0 360.0 -80.2 19.9 0.2 1.9 -1.7 19 19 A R 0 0 229 -2,-0.7 -1,-0.2 0, 0.0 0, 0.0 0.983 360.0 360.0 58.6 360.0 -3.1 3.8 -1.2