==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-FEB-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 24-OCT-10 2L52 . COMPND 2 MOLECULE: METHANOSARCINA ACETIVORANS SAMP1 HOMOLOG; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA ACETIVORANS; . AUTHOR F.F.DAMBERGER,N.RANJAN,M.SUTTER,F.H.-T.ALLAIN,E.WEBER-BAN . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6125.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 49.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 13.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 105 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 147.0 2.2 0.7 -1.6 2 2 A H - 0 0 119 1,-0.1 26,-0.4 25,-0.0 2,-0.3 0.288 360.0-120.9 57.3 170.9 4.4 -2.1 -3.1 3 3 A M - 0 0 96 24,-0.2 25,-0.2 25,-0.1 -1,-0.1 -0.841 25.3-131.1-146.5 104.4 3.1 -5.4 -4.7 4 4 A A - 0 0 2 -2,-0.3 23,-2.1 22,-0.2 2,-0.4 -0.338 24.1-119.7 -62.8 132.1 4.4 -8.5 -3.0 5 5 A E E +A 26 0A 127 21,-0.2 83,-0.5 79,-0.1 21,-0.3 -0.603 50.2 151.0 -78.2 129.4 5.8 -11.0 -5.5 6 6 A V E -Ab 25 88A 11 19,-3.0 19,-1.8 -2,-0.4 2,-0.3 -0.669 39.0-110.6-139.7-172.3 4.0 -14.3 -5.4 7 7 A K E -Ab 24 89A 67 81,-0.8 83,-1.5 17,-0.2 2,-0.4 -0.935 18.8-153.1-128.5 158.2 2.9 -17.3 -7.5 8 8 A V E -Ab 23 90A 1 15,-2.5 15,-2.4 -2,-0.3 2,-0.4 -1.000 5.4-163.0-134.4 131.4 -0.5 -18.4 -8.8 9 9 A K E -Ab 22 91A 58 81,-2.4 83,-2.4 -2,-0.4 2,-0.3 -0.934 4.2-160.7-115.0 137.6 -1.6 -21.9 -9.6 10 10 A L E - b 0 92A 4 11,-2.7 2,-0.3 -2,-0.4 83,-0.1 -0.768 6.6-165.2-111.2 160.9 -4.6 -22.9 -11.8 11 11 A F > - 0 0 76 81,-0.7 3,-1.9 -2,-0.3 4,-0.3 -0.962 49.3 -9.6-145.7 158.2 -6.5 -26.2 -11.9 12 12 A A T >> S- 0 0 64 -2,-0.3 3,-2.2 1,-0.3 4,-0.9 -0.134 130.8 -8.4 47.4-145.7 -9.0 -27.9 -14.1 13 13 A N H 3> S+ 0 0 81 1,-0.3 4,-1.1 2,-0.2 -1,-0.3 0.586 129.6 70.2 -56.1 -12.0 -10.5 -25.7 -16.9 14 14 A L H <> S+ 0 0 0 -3,-1.9 4,-1.3 2,-0.2 -1,-0.3 0.833 97.5 50.2 -74.7 -31.6 -8.8 -22.7 -15.2 15 15 A R H <> S+ 0 0 133 -3,-2.2 4,-1.1 -4,-0.3 5,-0.5 0.813 107.7 55.3 -70.2 -32.4 -5.4 -24.0 -16.4 16 16 A E H < S+ 0 0 148 -4,-0.9 -2,-0.2 1,-0.2 -1,-0.2 0.814 109.7 44.6 -69.8 -32.5 -6.9 -24.4 -19.9 17 17 A A H < S+ 0 0 36 -4,-1.1 26,-0.3 1,-0.2 -1,-0.2 0.736 115.8 45.7 -88.2 -23.5 -7.9 -20.8 -20.1 18 18 A A H < S- 0 0 8 -4,-1.3 -2,-0.2 2,-0.2 -1,-0.2 0.636 99.8-137.5 -85.5 -17.7 -4.6 -19.5 -18.7 19 19 A G S < S+ 0 0 65 -4,-1.1 -3,-0.2 1,-0.1 -4,-0.1 0.483 78.3 76.1 72.8 3.3 -2.8 -21.8 -21.0 20 20 A T S S- 0 0 41 -5,-0.5 -2,-0.2 -6,-0.2 -1,-0.1 -0.985 76.8-136.6-143.9 148.7 -0.5 -22.6 -18.0 21 21 A P S S- 0 0 64 0, 0.0 -11,-2.7 0, 0.0 2,-0.3 0.750 91.2 -9.1 -74.9 -25.6 -0.7 -24.6 -14.8 22 22 A E E -A 9 0A 79 -13,-0.3 -13,-0.2 -7,-0.1 69,-0.0 -0.978 61.8-174.7-165.0 163.0 0.9 -21.7 -12.9 23 23 A L E -A 8 0A 13 -15,-2.4 -15,-2.5 -2,-0.3 2,-0.1 -0.979 30.5-101.9-159.6 155.7 2.7 -18.4 -13.3 24 24 A P E +A 7 0A 99 0, 0.0 2,-0.3 0, 0.0 -17,-0.2 -0.484 47.2 151.4 -76.6 154.9 4.4 -15.6 -11.2 25 25 A L E -A 6 0A 18 -19,-1.8 -19,-3.0 -2,-0.1 2,-0.3 -0.908 29.1-126.9-163.4-175.3 2.6 -12.4 -10.3 26 26 A S E +A 5 0A 36 -21,-0.3 -21,-0.2 -2,-0.3 2,-0.2 -0.975 30.2 140.3-145.9 160.2 2.5 -9.7 -7.6 27 27 A G - 0 0 0 -23,-2.1 -24,-0.2 -2,-0.3 -23,-0.1 -0.725 46.3-128.2 168.8 146.7 0.1 -7.9 -5.3 28 28 A E S S+ 0 0 58 -26,-0.4 2,-0.3 -2,-0.2 56,-0.2 0.761 99.6 23.1 -78.6 -24.5 0.0 -6.6 -1.7 29 29 A K S > S- 0 0 69 54,-0.3 4,-0.8 53,-0.1 3,-0.4 -0.831 94.5 -96.7-132.1 171.0 -3.2 -8.5 -1.1 30 30 A V H >> S+ 0 0 0 -2,-0.3 4,-2.2 49,-0.2 3,-1.4 0.928 122.6 52.1 -55.2 -49.1 -4.9 -11.5 -2.6 31 31 A I H 3> S+ 0 0 34 49,-1.8 4,-2.5 1,-0.3 -1,-0.2 0.821 100.6 61.5 -60.5 -32.7 -7.2 -9.4 -4.8 32 32 A D H 34 S+ 0 0 58 -3,-0.4 -1,-0.3 48,-0.3 -6,-0.2 0.759 110.2 41.7 -68.6 -21.9 -4.2 -7.4 -6.2 33 33 A V H XX S+ 0 0 0 -3,-1.4 4,-1.7 -4,-0.8 3,-1.1 0.872 112.8 52.7 -85.6 -46.1 -2.8 -10.7 -7.6 34 34 A L H 3X S+ 0 0 1 -4,-2.2 4,-1.9 1,-0.3 -2,-0.2 0.851 104.9 56.7 -54.5 -39.9 -6.2 -11.9 -8.8 35 35 A L H 3< S+ 0 0 65 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.678 107.7 47.7 -72.4 -18.2 -6.8 -8.7 -10.7 36 36 A S H <> S+ 0 0 38 -3,-1.1 4,-1.1 -4,-0.2 5,-0.2 0.770 106.0 57.9 -88.4 -30.9 -3.5 -9.2 -12.7 37 37 A L H X S+ 0 0 1 -4,-1.7 4,-1.4 1,-0.2 3,-0.5 0.941 110.5 42.9 -60.8 -49.0 -4.4 -12.8 -13.5 38 38 A T H < S+ 0 0 5 -4,-1.9 7,-0.3 1,-0.2 -1,-0.2 0.626 102.9 72.9 -70.6 -14.8 -7.7 -11.6 -15.2 39 39 A D H 4 S+ 0 0 132 1,-0.2 -1,-0.2 -5,-0.2 -2,-0.2 0.893 113.4 20.4 -71.0 -41.0 -5.7 -8.8 -16.8 40 40 A K H < S+ 0 0 99 -4,-1.1 -2,-0.2 -3,-0.5 -1,-0.2 0.616 128.4 52.8-101.5 -18.3 -3.9 -10.9 -19.4 41 41 A Y >< + 0 0 45 -4,-1.4 3,-2.0 -5,-0.2 4,-0.4 -0.721 58.5 166.6-117.0 75.8 -6.3 -13.9 -19.2 42 42 A P G > S+ 0 0 91 0, 0.0 3,-0.6 0, 0.0 4,-0.5 0.684 71.5 77.0 -64.9 -16.8 -9.7 -12.2 -19.8 43 43 A A G 3 S+ 0 0 64 -26,-0.3 -25,-0.1 1,-0.2 -5,-0.1 0.430 102.3 38.5 -70.3 -0.6 -11.0 -15.8 -20.3 44 44 A L G X> S+ 0 0 1 -3,-2.0 3,-1.6 -6,-0.2 4,-1.4 0.361 89.2 91.7-124.9 -5.2 -10.9 -15.9 -16.4 45 45 A K T <4 S+ 0 0 79 -3,-0.6 4,-0.2 -4,-0.4 -2,-0.1 0.748 100.5 33.2 -64.6 -24.2 -12.1 -12.4 -15.7 46 46 A Y T 34 S+ 0 0 116 -4,-0.5 -1,-0.3 2,-0.1 5,-0.2 -0.026 115.2 59.2-120.4 25.1 -15.7 -13.7 -15.5 47 47 A V T <4 S+ 0 0 49 -3,-1.6 -2,-0.2 3,-0.1 17,-0.1 0.409 116.7 30.7-123.5 -15.2 -14.6 -17.1 -14.1 48 48 A I S < S+ 0 0 0 -4,-1.4 14,-2.6 1,-0.2 2,-0.3 0.533 127.4 38.0-116.2 -21.1 -13.0 -15.7 -10.9 49 49 A F B S-D 61 0B 4 -5,-0.4 2,-0.3 12,-0.3 12,-0.3 -0.912 87.3-101.8-129.9 159.6 -15.2 -12.6 -10.6 50 50 A E - 0 0 88 10,-3.0 2,-2.2 -2,-0.3 10,-0.4 -0.622 30.0-124.8 -78.8 135.5 -18.9 -11.8 -11.1 51 51 A K S S+ 0 0 126 -2,-0.3 3,-0.2 -5,-0.2 2,-0.2 -0.326 72.6 117.3 -75.9 54.2 -19.8 -9.9 -14.3 52 52 A G + 0 0 29 -2,-2.2 8,-0.1 1,-0.2 -3,-0.0 -0.568 47.2 41.8-116.7-179.8 -21.4 -7.1 -12.4 53 53 A D > + 0 0 86 -2,-0.2 3,-2.1 1,-0.2 5,-0.2 0.861 62.3 172.9 45.6 44.2 -20.9 -3.3 -11.9 54 54 A E T 3 S+ 0 0 136 1,-0.3 -1,-0.2 -3,-0.2 5,-0.0 0.226 71.6 56.3 -66.5 15.8 -20.2 -3.1 -15.6 55 55 A K T 3 S+ 0 0 209 3,-0.1 -1,-0.3 0, 0.0 2,-0.2 0.141 112.4 31.8-131.7 13.0 -20.1 0.7 -15.2 56 56 A S S < S- 0 0 76 -3,-2.1 0, 0.0 2,-0.2 0, 0.0 -0.756 85.1-102.0-150.0-167.1 -17.4 1.0 -12.5 57 57 A E S S+ 0 0 185 -2,-0.2 2,-0.3 2,-0.1 -3,-0.1 0.190 77.2 118.4-117.0 10.8 -14.3 -0.8 -11.2 58 58 A I + 0 0 101 -5,-0.2 2,-0.3 2,-0.0 -2,-0.2 -0.644 42.2 179.2 -74.0 134.5 -16.0 -2.5 -8.4 59 59 A L - 0 0 60 -2,-0.3 2,-0.4 -8,-0.1 -8,-0.1 -0.866 18.4-147.4-133.2 168.4 -15.7 -6.3 -8.7 60 60 A I - 0 0 74 -10,-0.4 -10,-3.0 -2,-0.3 -8,-0.1 -0.999 24.9-113.5-141.0 131.8 -16.8 -9.4 -6.7 61 61 A L B -D 49 0B 33 -2,-0.4 -12,-0.3 -12,-0.3 -13,-0.1 -0.375 48.9 -94.8 -61.8 143.3 -15.2 -12.8 -6.4 62 62 A C - 0 0 36 -14,-2.6 3,-0.2 1,-0.1 -1,-0.1 -0.124 23.2-130.5 -57.5 159.4 -17.3 -15.6 -8.0 63 63 A G S S+ 0 0 72 1,-0.2 -1,-0.1 -3,-0.1 -2,-0.0 0.107 103.4 47.3-100.0 18.7 -19.6 -17.5 -5.7 64 64 A S S S+ 0 0 55 -17,-0.1 -1,-0.2 31,-0.1 2,-0.2 0.350 90.7 94.7-137.8 -5.7 -18.4 -20.9 -7.0 65 65 A I - 0 0 15 -3,-0.2 2,-0.4 -17,-0.1 -17,-0.1 -0.504 57.2-146.8 -91.3 160.6 -14.6 -20.5 -6.9 66 66 A N E -C 93 0A 40 27,-2.4 27,-2.5 -2,-0.2 2,-0.4 -1.000 13.0-165.1-126.4 130.3 -12.1 -21.6 -4.2 67 67 A I E -C 92 0A 1 -2,-0.4 7,-0.8 25,-0.2 8,-0.6 -0.893 6.2-168.5-114.8 144.3 -9.0 -19.5 -3.5 68 68 A L E -C 91 0A 42 23,-1.9 23,-1.0 -2,-0.4 2,-0.4 -0.865 18.8-150.7-128.4 160.2 -5.9 -20.7 -1.5 69 69 A I E > S-C 90 0A 4 -2,-0.3 3,-2.7 21,-0.2 21,-0.2 -0.920 91.9 -29.9-132.2 108.4 -2.8 -19.2 -0.0 70 70 A N T 3 S- 0 0 74 19,-1.3 20,-0.1 -2,-0.4 18,-0.0 0.584 124.4 -57.0 54.9 10.7 0.0 -21.8 0.2 71 71 A G T 3 S+ 0 0 50 18,-0.2 -1,-0.3 20,-0.1 19,-0.1 0.323 114.7 119.5 104.3 -3.0 -3.0 -24.1 0.6 72 72 A N S < S- 0 0 97 -3,-2.7 4,-0.3 2,-0.0 -2,-0.1 0.428 72.4-129.1 -76.6 -1.0 -4.4 -22.2 3.6 73 73 A N > - 0 0 29 1,-0.1 3,-2.9 2,-0.1 -5,-0.3 0.939 0.3-134.2 51.1 99.9 -7.7 -21.4 1.9 74 74 A I G > >S+ 0 0 7 -7,-0.8 3,-1.8 1,-0.3 5,-0.8 0.723 101.9 79.3 -51.5 -21.1 -8.5 -17.6 2.1 75 75 A R G 3 5S+ 0 0 172 -8,-0.6 -1,-0.3 1,-0.3 -2,-0.1 0.608 100.8 38.0 -62.8 -12.2 -12.0 -18.8 3.0 76 76 A H G < 5S+ 0 0 151 -3,-2.9 -1,-0.3 -4,-0.3 -2,-0.2 0.203 121.5 51.5-118.2 9.4 -10.6 -19.5 6.5 77 77 A L T < 5S- 0 0 79 -3,-1.8 3,-0.1 -4,-0.2 -3,-0.1 -0.326 117.6 -55.2-124.8-155.7 -8.4 -16.3 6.5 78 78 A E T 5S- 0 0 123 1,-0.3 3,-0.4 -2,-0.1 2,-0.3 0.512 72.9-140.8 -70.3 -3.8 -8.8 -12.6 5.8 79 79 A G S > - 0 0 139 -81,-0.1 3,-1.9 -80,-0.1 -1,-0.1 -0.900 31.5 -90.0-140.9 166.2 4.2 -11.9 0.6 86 86 A D T 3 S+ 0 0 100 1,-0.3 -80,-0.1 -2,-0.3 -2,-0.0 0.344 127.7 23.7 -64.4 5.4 7.3 -11.8 -1.6 87 87 A S T 3 S+ 0 0 112 -80,-0.0 -1,-0.3 2,-0.0 -81,-0.2 0.175 93.7 125.6-153.0 16.3 7.3 -15.6 -1.8 88 88 A D E < -b 6 0A 25 -3,-1.9 -81,-0.8 -83,-0.5 2,-0.3 -0.091 44.1-146.6 -68.0 177.9 3.6 -16.5 -1.1 89 89 A E E -b 7 0A 52 -83,-0.2 -19,-1.3 -65,-0.0 2,-0.3 -0.977 7.2-158.1-149.2 152.0 1.5 -18.6 -3.5 90 90 A I E -bC 8 69A 1 -83,-1.5 -81,-2.4 -2,-0.3 2,-0.4 -0.936 0.9-160.1-133.1 154.3 -2.1 -18.8 -4.5 91 91 A G E -bC 9 68A 4 -23,-1.0 -23,-1.9 -2,-0.3 2,-0.4 -0.997 4.6-159.2-136.7 134.9 -4.3 -21.5 -6.1 92 92 A I E +bC 10 67A 0 -83,-2.4 -81,-0.7 -2,-0.4 -25,-0.2 -0.959 15.2 179.1-116.5 129.4 -7.6 -21.0 -7.9 93 93 A L E - C 0 66A 53 -27,-2.5 -27,-2.4 -2,-0.4 -81,-0.1 -0.961 22.0-126.6-133.3 147.0 -10.2 -23.8 -8.3 94 94 A P - 0 0 23 0, 0.0 -29,-0.1 0, 0.0 5,-0.0 -0.188 44.3 -78.2 -78.0 174.9 -13.6 -24.2 -9.8 95 95 A P - 0 0 50 0, 0.0 2,-0.3 0, 0.0 -30,-0.1 -0.170 45.8-144.9 -67.7 169.9 -16.8 -25.6 -8.1 96 96 A V + 0 0 118 1,-0.1 3,-0.0 -32,-0.0 0, 0.0 -0.917 69.5 20.4-137.7 161.6 -17.3 -29.3 -7.5 97 97 A S S S+ 0 0 142 -2,-0.3 2,-0.3 2,-0.1 -1,-0.1 0.647 127.9 22.2 52.7 18.0 -20.2 -31.7 -7.4 98 98 A G 0 0 55 1,-0.0 -1,-0.0 -3,-0.0 0, 0.0 -0.967 360.0 360.0 175.2 179.0 -22.1 -29.1 -9.5 99 99 A G 0 0 140 -2,-0.3 -2,-0.1 -5,-0.0 -35,-0.0 -0.113 360.0 360.0 178.4 360.0 -21.9 -26.1 -11.8