==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-MAY-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 01-NOV-10 2L5F . COMPND 2 MOLECULE: PRE-MRNA-PROCESSING FACTOR 40 HOMOLOG A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.JIANG,H.HU . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6044.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 60.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 23.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 2,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 127.4 21.6 6.9 -2.6 2 2 A S + 0 0 134 2,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.800 360.0 163.0-104.2 93.8 18.8 6.8 -5.3 3 3 A D + 0 0 78 -2,-0.9 3,-0.1 1,-0.1 16,-0.0 -0.958 15.6 144.7-114.2 122.2 17.1 3.5 -5.2 4 4 A V S S+ 0 0 95 -2,-0.5 -1,-0.1 25,-0.0 30,-0.0 0.136 78.2 41.0-133.4 15.9 13.7 3.0 -6.8 5 5 A A + 0 0 58 13,-0.1 2,-1.1 11,-0.0 4,-0.1 -0.161 61.8 165.6-162.8 49.8 14.2 -0.6 -8.1 6 6 A A S S- 0 0 23 1,-0.2 2,-1.1 2,-0.1 12,-0.7 -0.652 88.5 -30.0 -75.4 101.2 16.0 -2.8 -5.5 7 7 A G S S- 0 0 63 -2,-1.1 2,-2.8 10,-0.2 -1,-0.2 -0.177 77.9-152.3 84.5 -45.2 15.3 -6.2 -6.8 8 8 A T S > S+ 0 0 92 -2,-1.1 3,-0.6 1,-0.2 8,-0.2 -0.382 92.9 54.8 73.3 -62.9 12.0 -5.1 -8.4 9 9 A A T 3 S+ 0 0 92 -2,-2.8 -1,-0.2 1,-0.2 3,-0.2 -0.005 73.8 116.6 -86.5 30.0 10.6 -8.6 -8.1 10 10 A S T 3 S- 0 0 49 1,-0.3 2,-0.3 -4,-0.3 -1,-0.2 0.925 90.5 -1.2 -63.6 -45.0 11.5 -8.4 -4.4 11 11 A G B < >S-A 16 0A 9 5,-1.5 5,-2.1 -3,-0.6 -1,-0.3 -0.977 71.0-173.5-147.6 138.4 7.8 -8.7 -3.7 12 12 A A T 5 + 0 0 54 -2,-0.3 -3,-0.0 -3,-0.2 -4,-0.0 -0.313 61.2 69.6-111.9-164.0 4.7 -9.0 -5.9 13 13 A K T 5S+ 0 0 125 -2,-0.1 -1,-0.1 2,-0.0 2,-0.1 0.420 125.6 27.5 68.3 -1.5 0.9 -8.9 -5.3 14 14 A S T 5S- 0 0 1 -3,-0.1 58,-0.0 30,-0.1 17,-0.0 -0.343 108.4-112.3 172.0 90.9 1.7 -5.3 -4.5 15 15 A M T 5 + 0 0 114 15,-0.1 16,-1.4 -2,-0.1 17,-0.6 -0.080 55.4 155.4 -52.6 107.6 4.8 -4.1 -6.3 16 16 A W E < -AB 11 30A 25 -5,-2.1 -5,-1.5 -8,-0.2 2,-0.4 -0.998 31.4-154.4-139.2 136.5 7.3 -3.5 -3.6 17 17 A T E - B 0 29A 3 12,-2.3 12,-1.8 -2,-0.4 2,-0.4 -0.908 31.5-111.2-108.1 139.0 11.1 -3.5 -3.6 18 18 A E E + B 0 28A 100 -12,-0.7 2,-0.4 -2,-0.4 10,-0.2 -0.539 40.2 178.9 -74.5 125.1 13.0 -4.3 -0.4 19 19 A H E - B 0 27A 29 8,-2.1 8,-3.2 -2,-0.4 2,-0.4 -0.990 6.7-178.5-127.9 134.4 14.8 -1.2 1.0 20 20 A K E - B 0 26A 123 -2,-0.4 6,-0.3 6,-0.3 -2,-0.0 -0.989 23.6-129.8-131.7 141.7 16.9 -1.0 4.2 21 21 A S > - 0 0 33 4,-2.7 3,-3.1 -2,-0.4 4,-0.4 -0.626 37.5-104.6 -81.8 149.0 18.6 2.0 5.8 22 22 A P T 3 S+ 0 0 137 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.608 118.4 69.7 -51.1 -15.0 22.3 1.4 6.7 23 23 A D T 3 S- 0 0 160 2,-0.1 3,-0.1 1,-0.0 -3,-0.0 0.478 122.4-101.6 -82.9 -4.0 21.2 1.2 10.4 24 24 A G S < S+ 0 0 58 -3,-3.1 2,-0.6 1,-0.3 -1,-0.0 0.496 77.0 138.2 99.4 4.0 19.6 -2.2 9.6 25 25 A R - 0 0 123 -4,-0.4 -4,-2.7 2,-0.0 2,-0.5 -0.759 35.1-162.6 -85.8 119.2 16.0 -1.0 9.3 26 26 A T E +B 20 0A 47 -2,-0.6 -6,-0.3 -6,-0.3 2,-0.2 -0.881 15.4 165.9-106.1 130.6 14.2 -2.6 6.4 27 27 A Y E -B 19 0A 53 -8,-3.2 -8,-2.1 -2,-0.5 2,-0.4 -0.764 33.6-105.1-130.5 179.1 10.9 -1.3 5.0 28 28 A Y E -BC 18 37A 47 9,-2.7 9,-3.5 -2,-0.2 2,-0.6 -0.902 20.0-157.2-114.4 135.5 8.9 -1.8 1.9 29 29 A Y E -BC 17 36A 12 -12,-1.8 -12,-2.3 -2,-0.4 2,-0.7 -0.950 6.4-157.0-114.3 120.5 8.6 0.6 -1.0 30 30 A N E >>> -BC 16 35A 0 5,-2.3 4,-1.6 -2,-0.6 5,-1.3 -0.858 6.0-159.9 -99.9 115.6 5.6 0.3 -3.2 31 31 A T T 345S+ 0 0 38 -16,-1.4 -1,-0.1 -2,-0.7 -15,-0.1 0.659 86.3 72.7 -69.2 -15.9 6.2 1.7 -6.7 32 32 A E T 345S+ 0 0 27 -17,-0.6 -1,-0.2 1,-0.2 -16,-0.1 0.938 118.5 15.1 -63.3 -49.4 2.4 2.0 -7.1 33 33 A T T <45S- 0 0 7 -3,-0.6 -2,-0.2 2,-0.2 -1,-0.2 0.476 102.2-127.7-101.9 -7.9 2.2 4.9 -4.7 34 34 A K T <5 + 0 0 140 -4,-1.6 2,-0.3 1,-0.2 -3,-0.2 0.743 67.2 130.5 64.8 27.1 5.9 5.5 -4.8 35 35 A Q E < -C 30 0A 11 -5,-1.3 -5,-2.3 27,-0.0 2,-0.5 -0.711 60.3-128.0-112.4 160.6 5.9 5.4 -1.0 36 36 A S E +C 29 0A 14 -2,-0.3 27,-1.1 -7,-0.2 2,-0.3 -0.933 40.0 168.5-107.8 128.7 7.9 3.7 1.6 37 37 A T E -C 28 0A 5 -9,-3.5 -9,-2.7 -2,-0.5 3,-0.1 -0.835 33.5 -93.4-140.1 164.6 5.8 1.8 4.2 38 38 A W S S- 0 0 115 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 -0.087 71.1 -53.7 -71.8 175.7 5.9 -0.7 7.0 39 39 A E S S- 0 0 100 -13,-0.1 -1,-0.2 1,-0.1 -12,-0.0 -0.392 72.5-123.9 -53.3 119.5 5.4 -4.4 6.7 40 40 A K - 0 0 16 -2,-0.2 4,-0.1 -3,-0.1 -1,-0.1 -0.330 13.9-118.6 -77.2 148.0 2.0 -4.7 4.9 41 41 A P S > S- 0 0 38 0, 0.0 3,-1.5 0, 0.0 2,-0.5 0.311 72.0 -39.8 -54.7-167.5 -1.1 -6.5 6.0 42 42 A D G >> S+ 0 0 47 1,-0.3 4,-1.5 2,-0.2 3,-0.6 0.296 109.7 102.3 -49.7 8.1 -2.8 -9.4 4.1 43 43 A D G 34 S+ 0 0 1 -2,-0.5 -1,-0.3 1,-0.3 7,-0.1 0.857 81.8 50.0 -60.5 -35.3 -2.0 -7.5 0.8 44 44 A L G <4 S+ 0 0 48 -3,-1.5 -1,-0.3 -4,-0.1 -2,-0.2 0.575 110.9 54.7 -80.9 -12.2 0.9 -9.9 0.3 45 45 A K T <4 S- 0 0 115 -3,-0.6 -2,-0.2 1,-0.2 -3,-0.1 0.914 123.0 -53.0 -78.2 -82.9 -1.5 -12.7 0.9 46 46 A T >X - 0 0 67 -4,-1.5 4,-1.7 1,-0.1 3,-1.0 -0.961 42.5-112.5-164.7 141.9 -4.4 -12.3 -1.5 47 47 A P H 3> S+ 0 0 69 0, 0.0 4,-1.1 0, 0.0 3,-0.2 0.874 118.2 48.0 -50.3 -44.0 -6.8 -9.4 -2.4 48 48 A A H 34 S+ 0 0 65 1,-0.2 4,-0.4 2,-0.2 -5,-0.1 0.765 107.6 56.0 -70.9 -26.1 -9.9 -11.2 -0.9 49 49 A E H X> S+ 0 0 82 -3,-1.0 4,-0.7 -7,-0.2 3,-0.6 0.848 103.6 57.3 -69.2 -33.6 -7.9 -12.0 2.2 50 50 A Q H >X S+ 0 0 2 -4,-1.7 4,-2.7 -8,-0.3 3,-0.9 0.865 86.1 77.5 -62.7 -38.4 -7.3 -8.3 2.6 51 51 A L H 3< S+ 0 0 37 -4,-1.1 41,-0.8 1,-0.3 -1,-0.2 0.749 97.9 43.1 -53.7 -34.1 -10.9 -7.2 2.6 52 52 A L H <4 S+ 0 0 136 -3,-0.6 -1,-0.3 -4,-0.4 -2,-0.2 0.847 124.3 36.9 -77.7 -35.8 -11.5 -8.3 6.3 53 53 A S H << S- 0 0 51 -3,-0.9 2,-0.3 -4,-0.7 -2,-0.2 0.977 136.5 -10.6 -76.8 -66.0 -8.2 -6.8 7.4 54 54 A K S < S- 0 0 108 -4,-2.7 -1,-0.3 -5,-0.1 37,-0.2 -0.999 79.4-101.0-144.2 135.5 -7.9 -3.7 5.3 55 55 A C - 0 0 11 35,-0.7 -4,-0.1 -2,-0.3 17,-0.1 -0.218 28.7-120.4 -61.2 142.5 -10.0 -2.5 2.3 56 56 A P S S+ 0 0 6 0, 0.0 16,-2.8 0, 0.0 2,-0.7 0.712 110.6 64.5 -58.0 -24.4 -8.5 -3.0 -1.2 57 57 A W E S+D 71 0B 47 14,-0.2 2,-0.3 15,-0.1 14,-0.2 -0.937 87.5 178.6 -94.5 116.2 -8.8 0.7 -1.5 58 58 A K E -D 70 0B 10 12,-1.7 12,-1.8 -2,-0.7 2,-0.4 -0.848 32.7-154.3-132.3 156.6 -6.4 1.8 1.1 59 59 A E E +D 69 0B 95 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.993 27.7 153.2-128.7 120.9 -4.9 4.8 2.8 60 60 A Y E -D 68 0B 8 8,-1.3 8,-1.9 -2,-0.4 2,-0.4 -0.949 36.4-119.9-140.2 164.3 -1.5 4.7 4.5 61 61 A K E -D 67 0B 116 -2,-0.3 6,-0.2 6,-0.2 -2,-0.0 -0.886 23.4-134.6-108.2 138.4 1.3 7.1 5.3 62 62 A S > - 0 0 15 4,-1.4 3,-0.5 -2,-0.4 -25,-0.2 0.010 41.8 -87.8 -69.2-176.6 4.9 6.7 4.1 63 63 A D T 3 S+ 0 0 120 -27,-1.1 -26,-0.1 1,-0.3 -1,-0.1 0.800 139.2 52.2 -64.4 -27.8 8.0 7.2 6.2 64 64 A S T 3 S- 0 0 91 -28,-0.2 -1,-0.3 2,-0.1 -29,-0.0 0.592 121.9-119.9 -78.8 -13.1 7.6 10.8 5.1 65 65 A G < + 0 0 25 -3,-0.5 2,-0.5 1,-0.3 -2,-0.1 0.700 58.2 154.2 83.5 20.7 4.0 10.4 6.4 66 66 A K - 0 0 130 1,-0.0 -4,-1.4 2,-0.0 2,-0.4 -0.704 38.3-136.1 -80.9 127.3 2.3 11.2 3.1 67 67 A T E -D 61 0B 36 -2,-0.5 2,-0.4 -6,-0.2 -6,-0.2 -0.710 25.4-179.3 -84.9 132.1 -1.1 9.6 2.9 68 68 A Y E -D 60 0B 89 -8,-1.9 -8,-1.3 -2,-0.4 2,-0.5 -0.975 16.6-150.9-129.8 147.7 -2.0 7.9 -0.4 69 69 A Y E +DE 59 78B 10 9,-2.4 9,-3.1 -2,-0.4 2,-0.3 -0.973 23.9 175.8-120.5 124.7 -5.2 6.2 -1.5 70 70 A Y E -DE 58 77B 3 -12,-1.8 -12,-1.7 -2,-0.5 2,-0.9 -0.945 37.6-127.9-137.2 148.4 -5.0 3.4 -4.0 71 71 A N E >> -DE 57 76B 14 5,-3.1 4,-1.4 -2,-0.3 5,-1.2 -0.851 28.6-172.4 -88.5 103.6 -7.1 0.8 -5.8 72 72 A S T 45S+ 0 0 7 -16,-2.8 -1,-0.2 -2,-0.9 -15,-0.1 0.881 76.0 54.6 -72.4 -38.7 -5.0 -2.4 -5.1 73 73 A Q T 45S+ 0 0 80 1,-0.2 -1,-0.2 -17,-0.1 -16,-0.1 0.882 126.1 22.9 -62.7 -39.3 -6.9 -4.9 -7.3 74 74 A T T 45S- 0 0 98 2,-0.1 -1,-0.2 -3,-0.0 -2,-0.2 0.512 105.7-126.6-107.0 -10.2 -6.6 -2.7 -10.4 75 75 A K T <5 + 0 0 66 -4,-1.4 2,-0.3 1,-0.2 -3,-0.2 0.843 53.3 151.4 64.7 40.7 -3.5 -0.9 -9.1 76 76 A E E < -E 71 0B 105 -5,-1.2 -5,-3.1 -43,-0.0 2,-0.4 -0.731 29.2-154.3 -91.0 148.2 -4.8 2.6 -9.7 77 77 A S E +E 70 0B 58 -2,-0.3 2,-0.3 -7,-0.3 -7,-0.2 -0.988 22.2 151.4-132.1 137.9 -3.4 5.3 -7.3 78 78 A R E -E 69 0B 96 -9,-3.1 -9,-2.4 -2,-0.4 2,-0.5 -0.902 43.6-118.4-146.2 170.4 -4.9 8.6 -6.2 79 79 A W S S+ 0 0 145 -2,-0.3 2,-0.2 -11,-0.2 -11,-0.1 -0.913 77.2 83.6-118.7 107.7 -5.0 11.1 -3.4 80 80 A A - 0 0 37 -2,-0.5 -2,-0.1 2,-0.0 -12,-0.0 -0.548 50.6-162.3 162.8 126.0 -8.6 11.2 -2.2 81 81 A K + 0 0 114 -2,-0.2 2,-0.3 4,-0.0 -22,-0.0 -0.402 17.9 167.4-128.8 58.3 -10.3 8.9 0.4 82 82 A P >> - 0 0 50 0, 0.0 3,-1.7 0, 0.0 4,-0.6 -0.560 34.7-143.8 -68.8 131.5 -14.2 9.2 0.1 83 83 A K H 3>>S+ 0 0 113 -2,-0.3 5,-1.6 1,-0.3 4,-1.6 0.681 97.2 80.3 -65.1 -16.1 -15.9 6.4 2.1 84 84 A E H 345S+ 0 0 149 2,-0.2 -1,-0.3 3,-0.2 5,-0.1 0.815 84.6 58.8 -57.1 -34.0 -18.3 6.8 -0.8 85 85 A L H <45S+ 0 0 61 -3,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.957 113.0 35.4 -62.4 -52.5 -15.8 4.7 -2.8 86 86 A E H <5S- 0 0 20 -4,-0.6 -1,-0.2 3,-0.2 -2,-0.2 0.679 106.0-134.8 -72.3 -18.4 -16.0 1.7 -0.4 87 87 A D T <5S+ 0 0 138 -4,-1.6 -3,-0.2 1,-0.2 -2,-0.1 0.729 91.2 41.0 67.7 25.0 -19.7 2.7 0.0 88 88 A L S