==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-FEB-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-NOV-10 2L5N . COMPND 2 MOLECULE: YBBR FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; . AUTHOR J.R.CORT,A.W.BARB,H.LEE,T.A.RAMELOT,Y.YANG,R.L.BELOTE,C.R.CI . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7896.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 45.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 24.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 164 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 47.9 -25.7 8.8 -25.2 2 2 A S - 0 0 90 1,-0.2 3,-0.0 3,-0.0 0, 0.0 -0.993 360.0-143.0-149.4 149.4 -24.0 10.2 -22.0 3 3 A Q S S+ 0 0 181 -2,-0.3 -1,-0.2 3,-0.0 0, 0.0 0.943 80.6 1.1 -75.8 -87.1 -20.9 12.3 -21.3 4 4 A T S S+ 0 0 104 2,-0.0 -2,-0.0 36,-0.0 0, 0.0 0.229 80.2 105.5 -81.1-151.1 -19.3 11.0 -18.0 5 5 A L + 0 0 124 1,-0.2 2,-0.3 35,-0.0 3,-0.0 0.984 44.9 154.2 73.1 78.5 -20.5 8.1 -15.9 6 6 A D - 0 0 87 1,-0.1 -1,-0.2 33,-0.0 -2,-0.0 -0.978 51.0 -75.1-137.1 149.1 -18.2 5.2 -16.5 7 7 A R - 0 0 215 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 0.071 67.7 -81.8 -39.2 147.2 -17.1 2.1 -14.5 8 8 A D - 0 0 54 1,-0.1 2,-0.1 32,-0.1 32,-0.1 -0.236 52.1-109.7 -55.7 137.3 -14.8 2.9 -11.6 9 9 A P - 0 0 29 0, 0.0 28,-0.7 0, 0.0 2,-0.7 -0.448 20.8-148.4 -72.8 142.0 -11.1 3.2 -12.7 10 10 A T E +A 36 0A 87 -2,-0.1 2,-0.4 26,-0.1 26,-0.1 -0.835 26.7 168.6-113.9 94.8 -8.6 0.4 -11.7 11 11 A L E -A 35 0A 69 -2,-0.7 24,-1.3 24,-0.7 2,-0.4 -0.842 26.4-136.4-109.7 143.4 -5.1 1.9 -11.2 12 12 A T E -A 34 0A 83 -2,-0.4 2,-0.4 22,-0.2 22,-0.2 -0.833 14.4-154.8-102.1 133.3 -2.1 0.2 -9.6 13 13 A L E -A 33 0A 24 20,-1.6 20,-1.3 -2,-0.4 2,-0.8 -0.864 23.5-114.5-108.9 139.9 0.1 2.0 -7.1 14 14 A S - 0 0 74 -2,-0.4 2,-0.8 35,-0.4 37,-0.6 -0.600 30.6-133.6 -74.6 109.8 3.8 1.1 -6.4 15 15 A L E -c 51 0B 12 -2,-0.8 2,-0.4 15,-0.1 37,-0.2 -0.514 32.5-179.3 -69.4 106.6 3.9 -0.1 -2.8 16 16 A I E -c 52 0B 89 35,-1.6 37,-0.9 -2,-0.8 2,-0.4 -0.868 26.8-121.5-111.0 142.3 6.9 1.7 -1.3 17 17 A A E -c 53 0B 31 -2,-0.4 3,-0.3 35,-0.2 2,-0.3 -0.679 32.1-171.1 -84.7 127.1 8.1 1.3 2.3 18 18 A K + 0 0 122 35,-1.0 37,-0.1 -2,-0.4 34,-0.0 -0.767 62.4 27.2-115.7 162.1 8.2 4.5 4.4 19 19 A N S S- 0 0 88 -2,-0.3 -1,-0.2 1,-0.2 3,-0.1 0.850 78.9-171.0 57.5 34.8 9.6 5.4 7.8 20 20 A T - 0 0 76 -3,-0.3 -1,-0.2 1,-0.1 4,-0.1 -0.421 23.9-117.5 -60.2 114.7 12.1 2.6 7.3 21 21 A P > - 0 0 28 0, 0.0 3,-1.0 0, 0.0 2,-0.1 -0.108 34.3 -99.4 -51.8 149.8 14.0 2.0 10.6 22 22 A A T 3 S+ 0 0 83 1,-0.2 3,-0.1 -3,-0.1 0, 0.0 -0.439 103.7 13.4 -74.9 145.1 17.7 2.7 10.6 23 23 A N T 3 S+ 0 0 128 1,-0.2 69,-1.2 -2,-0.1 2,-0.3 0.701 102.9 125.6 64.1 18.5 20.2 -0.2 10.3 24 24 A S E < -E 91 0C 23 -3,-1.0 2,-0.4 67,-0.2 -1,-0.2 -0.831 42.0-168.4-110.7 147.2 17.2 -2.4 9.3 25 25 A M E -E 90 0C 91 65,-2.8 65,-1.2 -2,-0.3 2,-0.0 -0.947 17.1-136.2-139.1 116.2 16.7 -4.5 6.2 26 26 A I E -E 89 0C 42 -2,-0.4 2,-0.3 63,-0.2 63,-0.2 -0.337 4.3-149.1 -69.7 149.4 13.4 -6.1 5.1 27 27 A M + 0 0 118 61,-3.7 61,-0.3 2,-0.1 2,-0.2 -0.536 69.2 63.1-118.7 63.8 13.4 -9.7 3.9 28 28 A T S S- 0 0 58 -2,-0.3 2,-0.2 59,-0.1 -2,-0.1 -0.879 79.0-107.9-178.0 146.6 10.5 -9.6 1.4 29 29 A K - 0 0 172 -2,-0.2 -2,-0.1 1,-0.0 0, 0.0 -0.535 27.9-128.5 -85.0 151.4 9.6 -7.9 -1.9 30 30 A L - 0 0 51 -2,-0.2 2,-0.2 -15,-0.1 -15,-0.1 -0.859 25.1-164.2-103.8 105.4 7.0 -5.2 -2.1 31 31 A P - 0 0 76 0, 0.0 -15,-0.0 0, 0.0 0, 0.0 -0.541 24.8-102.5 -87.8 152.1 4.3 -5.8 -4.8 32 32 A S - 0 0 56 -2,-0.2 2,-0.3 -18,-0.1 -18,-0.2 0.107 34.6-128.0 -59.2-179.0 1.9 -3.1 -6.2 33 33 A V E -A 13 0A 3 -20,-1.3 -20,-1.6 50,-0.0 2,-0.5 -0.994 3.7-132.6-139.6 144.9 -1.8 -2.8 -5.1 34 34 A R E -AB 12 81A 158 47,-1.4 47,-0.7 -2,-0.3 2,-0.3 -0.851 29.3-177.7-100.0 125.2 -5.1 -2.7 -6.9 35 35 A V E -AB 11 80A 17 -24,-1.3 -24,-0.7 -2,-0.5 2,-0.4 -0.891 14.4-149.8-124.2 153.5 -7.5 0.1 -5.7 36 36 A K E -AB 10 79A 97 43,-1.3 42,-2.1 -2,-0.3 43,-0.9 -0.965 7.5-164.4-124.7 138.2 -11.1 1.1 -6.7 37 37 A T E - B 0 77A 18 -28,-0.7 2,-1.9 -2,-0.4 40,-0.2 -0.979 24.1-137.4-125.5 131.8 -12.6 4.6 -6.6 38 38 A E S S+ 0 0 111 38,-0.7 2,-0.2 -2,-0.4 39,-0.1 -0.187 85.4 64.8 -78.0 47.5 -16.4 5.4 -6.8 39 39 A G S S- 0 0 10 -2,-1.9 2,-0.4 -30,-0.1 -2,-0.2 -0.790 81.3-110.6-149.5-169.2 -15.4 8.3 -9.2 40 40 A Y + 0 0 101 -2,-0.2 3,-0.1 -32,-0.1 -32,-0.1 -0.891 27.8 169.4-142.4 108.7 -14.0 9.1 -12.6 41 41 A N + 0 0 22 -2,-0.4 5,-0.1 1,-0.1 -2,-0.0 -0.753 6.2 178.8-119.7 84.3 -10.6 10.7 -13.1 42 42 A P S S- 0 0 133 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.718 84.5 -16.1 -56.3 -19.3 -9.5 10.6 -16.8 43 43 A S + 0 0 76 -3,-0.1 3,-0.1 2,-0.1 -2,-0.1 0.052 62.5 154.0-145.3-101.7 -6.4 12.5 -15.7 44 44 A I S S- 0 0 93 1,-0.2 4,-0.2 2,-0.1 -3,-0.0 0.866 90.6 -74.4 58.8 38.0 -5.8 14.4 -12.4 45 45 A N > - 0 0 72 1,-0.2 3,-2.4 2,-0.1 -1,-0.2 0.918 55.0-163.3 39.4 70.9 -2.1 13.7 -12.8 46 46 A V T 3 S+ 0 0 76 1,-0.3 3,-0.3 -3,-0.1 -1,-0.2 0.673 79.8 82.7 -56.2 -14.5 -2.2 10.1 -11.9 47 47 A N T 3 S+ 0 0 112 1,-0.3 2,-1.4 3,-0.0 -1,-0.3 0.846 80.4 64.4 -58.9 -33.8 1.6 10.5 -11.5 48 48 A E S < S+ 0 0 137 -3,-2.4 2,-0.3 -4,-0.2 -1,-0.3 -0.474 80.5 104.3 -91.0 63.6 0.9 11.8 -8.0 49 49 A L + 0 0 43 -2,-1.4 -35,-0.4 -3,-0.3 2,-0.3 -0.882 38.3 147.9-148.4 110.7 -0.6 8.6 -6.6 50 50 A F - 0 0 108 -2,-0.3 2,-0.4 -37,-0.1 20,-0.3 -0.978 33.4-138.6-143.3 156.6 1.2 6.3 -4.2 51 51 A A E -c 15 0B 2 -37,-0.6 -35,-1.6 -2,-0.3 2,-0.3 -0.914 22.6-174.9-115.8 140.9 0.5 3.9 -1.3 52 52 A Y E -cD 16 68B 63 16,-1.8 16,-0.7 -2,-0.4 2,-0.3 -0.995 14.4-146.2-141.2 144.6 2.7 3.7 1.8 53 53 A V E -c 17 0B 0 -37,-0.9 -35,-1.0 -2,-0.3 2,-0.3 -0.727 23.8-117.8-105.5 156.1 2.9 1.5 4.9 54 54 A D - 0 0 62 12,-0.4 -35,-0.1 -2,-0.3 12,-0.1 -0.736 23.1-179.1 -97.2 142.8 3.9 2.6 8.4 55 55 A L + 0 0 8 -2,-0.3 -1,-0.1 -37,-0.1 -36,-0.0 -0.188 24.1 148.8-131.3 40.5 7.0 1.2 10.2 56 56 A S + 0 0 121 -36,-0.1 2,-0.3 -35,-0.0 -1,-0.1 0.308 69.0 53.3 -60.0 14.2 6.8 3.1 13.5 57 57 A G - 0 0 40 2,-0.0 2,-0.3 -36,-0.0 0, 0.0 -0.976 64.6-161.4-148.3 159.2 8.4 -0.0 15.0 58 58 A S + 0 0 67 -2,-0.3 -3,-0.0 -38,-0.1 33,-0.0 -0.974 28.4 126.9-148.2 130.5 11.3 -2.3 14.4 59 59 A E - 0 0 157 -2,-0.3 2,-2.5 2,-0.2 30,-0.2 -0.665 66.2 -96.2 179.9 123.1 12.1 -5.9 15.5 60 60 A P S S+ 0 0 90 0, 0.0 2,-0.3 0, 0.0 30,-0.1 -0.098 85.2 114.3 -45.6 71.4 13.1 -9.2 13.7 61 61 A G S S- 0 0 38 -2,-2.5 2,-1.4 26,-0.1 28,-1.0 -0.977 77.7-106.6-145.3 155.7 9.5 -10.4 13.5 62 62 A E E -F 88 0D 145 -2,-0.3 2,-0.4 26,-0.2 26,-0.2 -0.648 47.8-177.8 -86.1 87.1 6.9 -11.1 10.8 63 63 A H E -F 87 0D 94 -2,-1.4 24,-1.7 24,-0.9 2,-0.7 -0.701 24.5-133.3 -92.4 137.5 4.6 -8.1 11.3 64 64 A D E -F 86 0D 85 -2,-0.4 2,-0.4 22,-0.2 22,-0.2 -0.778 24.5-161.6 -90.4 115.9 1.4 -7.6 9.3 65 65 A Y E -F 85 0D 28 20,-2.4 20,-2.3 -2,-0.7 2,-0.2 -0.841 12.9-128.7-104.7 135.2 1.1 -4.0 8.0 66 66 A E E -F 84 0D 147 -2,-0.4 2,-0.6 18,-0.2 -12,-0.4 -0.548 26.7-110.1 -81.1 142.1 -2.1 -2.4 6.8 67 67 A V - 0 0 14 16,-2.1 2,-0.6 -2,-0.2 -14,-0.1 -0.593 32.5-162.2 -74.9 117.5 -2.2 -0.7 3.4 68 68 A K B -D 52 0B 98 -16,-0.7 -16,-1.8 -2,-0.6 2,-0.1 -0.888 6.3-158.9-106.7 114.8 -2.6 3.1 4.0 69 69 A V - 0 0 44 -2,-0.6 -18,-0.1 -18,-0.2 11,-0.0 -0.347 26.0-102.0 -85.5 169.3 -3.8 5.1 0.9 70 70 A E - 0 0 81 -20,-0.3 -1,-0.1 -2,-0.1 -19,-0.0 -0.827 40.8-116.6 -94.4 111.8 -3.4 8.8 0.3 71 71 A P - 0 0 96 0, 0.0 5,-0.1 0, 0.0 -1,-0.0 -0.146 23.9-140.2 -48.1 131.3 -6.7 10.7 1.0 72 72 A I - 0 0 59 3,-0.2 2,-2.6 1,-0.1 3,-0.1 -0.848 1.2-149.6 -99.5 109.5 -8.1 12.3 -2.1 73 73 A P S S+ 0 0 131 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.242 93.5 27.5 -74.0 55.6 -9.5 15.9 -1.5 74 74 A N S S+ 0 0 140 -2,-2.6 2,-0.2 1,-0.7 -2,-0.0 0.136 116.9 45.1-175.1 -44.3 -12.1 15.6 -4.3 75 75 A I S S- 0 0 37 -3,-0.1 -1,-0.7 -36,-0.1 2,-0.3 -0.606 72.2-120.7-112.6 174.2 -13.0 11.9 -4.8 76 76 A K - 0 0 124 -2,-0.2 -38,-0.7 -3,-0.1 2,-0.3 -0.826 17.2-125.8-117.8 156.4 -13.9 8.9 -2.5 77 77 A I E -B 37 0A 70 -2,-0.3 -40,-0.2 -40,-0.2 3,-0.1 -0.688 13.6-170.6 -99.4 153.2 -12.3 5.5 -2.0 78 78 A V E - 0 0 67 -42,-2.1 2,-0.3 1,-0.4 -41,-0.2 0.788 55.8 -61.0-108.1 -49.7 -14.1 2.2 -2.2 79 79 A E E -B 36 0A 109 -43,-0.9 -43,-1.3 2,-0.0 -1,-0.4 -0.982 41.9-107.5-179.7-176.0 -11.6 -0.4 -0.9 80 80 A I E -B 35 0A 32 -2,-0.3 -45,-0.2 -45,-0.2 3,-0.2 -0.835 21.3-128.4-129.9 167.4 -8.2 -2.1 -1.3 81 81 A S E S+B 34 0A 71 -47,-0.7 -47,-1.4 1,-0.4 2,-0.2 -0.637 99.2 18.4-167.0 106.1 -7.0 -5.6 -2.5 82 82 A P S S- 0 0 74 0, 0.0 -1,-0.4 0, 0.0 3,-0.1 0.552 79.6-168.2 -62.4-173.8 -5.1 -7.0 -0.7 83 83 A R + 0 0 162 1,-0.4 -16,-2.1 -2,-0.2 2,-0.3 0.568 69.7 23.3-118.5 -23.5 -5.9 -4.9 2.5 84 84 A V E -F 66 0D 68 -18,-0.2 -1,-0.4 -4,-0.0 2,-0.3 -0.989 67.1-162.8-144.4 149.8 -3.0 -6.1 4.6 85 85 A V E -F 65 0D 28 -20,-2.3 -20,-2.4 -2,-0.3 2,-0.6 -0.945 17.5-127.6-136.4 157.1 0.4 -7.7 3.9 86 86 A T E +F 64 0D 75 -2,-0.3 2,-0.5 -22,-0.2 -22,-0.2 -0.911 26.1 179.8-109.1 119.1 3.1 -9.6 5.7 87 87 A L E -F 63 0D 5 -24,-1.7 -24,-0.9 -2,-0.6 2,-0.4 -0.973 21.7-136.6-122.7 126.2 6.7 -8.3 5.6 88 88 A Q E -F 62 0D 95 -2,-0.5 -61,-3.7 -61,-0.3 2,-0.4 -0.648 17.8-150.4 -83.6 130.5 9.6 -10.0 7.3 89 89 A L E -E 26 0C 11 -28,-1.0 2,-0.4 -2,-0.4 -63,-0.2 -0.843 15.9-179.4-104.0 136.2 12.0 -7.7 9.2 90 90 A E E -E 25 0C 77 -65,-1.2 -65,-2.8 -2,-0.4 -29,-0.0 -0.997 25.1-118.2-138.1 140.5 15.7 -8.5 9.6 91 91 A H E -E 24 0C 97 -2,-0.4 2,-0.3 -67,-0.2 -67,-0.2 -0.137 29.6-154.3 -67.2 167.3 18.6 -6.6 11.3 92 92 A H + 0 0 102 -69,-1.2 3,-0.4 1,-0.3 -1,-0.0 -0.933 54.9 36.9-142.6 164.5 21.7 -5.4 9.4 93 93 A H S S- 0 0 112 -2,-0.3 2,-2.8 1,-0.2 -1,-0.3 0.945 77.7-119.9 55.1 93.9 25.3 -4.6 10.0 94 94 A H - 0 0 153 -3,-0.1 -1,-0.2 2,-0.1 -3,-0.0 -0.333 60.6 -79.4 -63.4 75.4 26.6 -7.2 12.5 95 95 A H 0 0 165 -2,-2.8 0, 0.0 -3,-0.4 0, 0.0 0.096 360.0 360.0 52.6-174.7 27.6 -4.6 15.1 96 96 A H 0 0 236 -3,-0.0 -1,-0.2 0, 0.0 -2,-0.1 0.900 360.0 360.0 -64.4 360.0 30.8 -2.6 14.7