==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 22-MAR-02 1L8Y . COMPND 2 MOLECULE: UPSTREAM BINDING FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.YANG,Y.XU,J.WU,W.ZENG,Y.SHI . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6935.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 81.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 21.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 25 0, 0.0 65,-0.3 0, 0.0 66,-0.1 0.000 360.0 360.0 360.0 -98.0 5.1 5.6 17.5 2 2 A K + 0 0 150 61,-0.2 68,-0.1 0, 0.0 64,-0.1 -0.252 360.0 25.8 172.5 -74.5 2.1 3.8 18.9 3 3 A L - 0 0 126 66,-0.0 2,-0.9 0, 0.0 3,-0.1 -0.942 63.3-144.8-125.7 113.0 0.0 1.6 16.5 4 4 A P + 0 0 48 0, 0.0 59,-0.1 0, 0.0 60,-0.1 -0.627 17.6 178.0 -78.2 104.6 1.5 -0.0 13.4 5 5 A E - 0 0 133 -2,-0.9 55,-0.1 57,-0.0 59,-0.0 0.816 28.6-150.0 -72.8 -30.3 -1.1 -0.1 10.7 6 6 A S - 0 0 45 54,-0.2 54,-0.1 -3,-0.1 55,-0.1 0.978 9.2-145.2 57.3 86.8 1.5 -1.7 8.3 7 7 A P - 0 0 15 0, 0.0 50,-0.1 0, 0.0 3,-0.1 0.494 9.8-126.0 -56.1-149.4 0.6 -0.5 4.8 8 8 A K >> - 0 0 124 1,-0.1 2,-1.2 45,-0.1 3,-0.6 0.068 24.3-134.8-158.0 28.8 1.0 -2.7 1.7 9 9 A R H 3> S+ 0 0 107 47,-0.4 4,-1.2 1,-0.2 47,-0.9 -0.240 90.7 18.4 50.3 -88.7 3.1 -0.7 -0.6 10 10 A A H 3> S+ 0 0 6 -2,-1.2 4,-1.9 2,-0.2 5,-0.5 0.990 132.3 36.4 -74.0 -77.0 1.2 -1.3 -3.9 11 11 A E H <> S+ 0 0 102 -3,-0.6 4,-0.7 1,-0.2 5,-0.4 0.721 122.3 51.5 -50.8 -24.0 -2.3 -2.5 -3.1 12 12 A E H X S+ 0 0 24 -4,-0.5 4,-1.4 3,-0.2 5,-0.4 0.979 110.4 39.0 -80.3 -66.1 -2.3 -0.2 -0.0 13 13 A I H X S+ 0 0 20 -4,-1.2 4,-0.7 39,-0.3 -2,-0.2 0.924 128.1 36.2 -48.6 -52.1 -1.3 3.2 -1.3 14 14 A W H X S+ 0 0 49 -4,-1.9 4,-3.3 -5,-0.4 3,-0.5 0.976 114.4 50.4 -69.9 -60.7 -3.3 2.8 -4.4 15 15 A Q H >X>S+ 0 0 39 -4,-0.7 4,-2.4 -5,-0.5 3,-0.6 0.944 117.1 41.3 -43.0 -67.1 -6.4 0.8 -3.3 16 16 A Q H 3<5S+ 0 0 116 -4,-1.4 4,-0.3 -5,-0.4 -1,-0.3 0.782 116.8 53.8 -51.5 -28.2 -7.1 3.2 -0.4 17 17 A S H 3<5S+ 0 0 87 -4,-0.7 -1,-0.3 -3,-0.5 -2,-0.2 0.880 127.9 14.4 -76.0 -40.7 -6.3 5.9 -2.9 18 18 A V H XX5S+ 0 0 28 -4,-3.3 3,-2.7 -3,-0.6 4,-1.9 0.862 109.8 73.8-100.4 -52.0 -8.7 4.8 -5.6 19 19 A I H 3X5S+ 0 0 9 -4,-2.4 4,-3.7 -5,-0.4 5,-0.3 0.758 91.3 65.9 -34.5 -34.7 -11.1 2.3 -4.0 20 20 A G H 3> S+ 0 0 111 -3,-2.7 4,-1.9 -4,-0.2 -2,-0.2 0.773 120.2 52.5 -83.3 -28.4 -13.9 6.8 -5.6 22 22 A Y H X S+ 0 0 46 -4,-1.9 4,-0.6 2,-0.2 7,-0.2 0.878 111.6 45.1 -74.0 -38.5 -14.5 3.3 -7.1 23 23 A L H <>S+ 0 0 48 -4,-3.7 5,-2.9 -5,-0.3 6,-0.9 0.740 112.2 56.1 -74.3 -23.8 -16.6 2.2 -4.2 24 24 A A H ><5S+ 0 0 60 -4,-0.6 3,-1.3 -5,-0.3 -2,-0.2 0.906 91.2 67.7 -73.7 -47.6 -18.4 5.6 -4.4 25 25 A R H 3<5S+ 0 0 155 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.817 122.5 17.4 -44.0 -40.1 -19.5 5.4 -8.0 26 26 A F T 3<5S- 0 0 139 -4,-0.6 -1,-0.3 -3,-0.1 -2,-0.2 0.217 106.2-115.9-119.8 12.9 -21.9 2.5 -7.1 27 27 A K T < 5S+ 0 0 172 -3,-1.3 -3,-0.2 1,-0.1 -4,-0.1 0.962 109.5 17.5 48.4 62.9 -22.1 3.0 -3.3 28 28 A N S > > + 0 0 26 -6,-0.9 4,-3.7 1,-0.2 3,-2.4 0.563 29.9 124.1 -68.7 -8.6 -18.9 -1.1 -6.1 30 30 A R H 3>> + 0 0 125 1,-0.3 4,-2.9 2,-0.3 5,-0.5 0.703 66.8 58.0 -18.8 -55.3 -16.1 -2.9 -4.2 31 31 A V H <45S+ 0 0 122 -3,-0.6 4,-0.3 1,-0.2 -1,-0.3 0.930 127.1 17.9 -48.0 -53.0 -16.8 -6.0 -6.3 32 32 A K H <>5S+ 0 0 139 -3,-2.4 4,-2.6 2,-0.1 -2,-0.3 0.670 125.8 61.1 -92.3 -21.2 -16.2 -4.1 -9.5 33 33 A A H X5S+ 0 0 0 -4,-3.7 4,-1.5 2,-0.2 -3,-0.2 0.977 103.9 45.2 -69.0 -57.9 -14.3 -1.3 -7.7 34 34 A L H X5S+ 0 0 40 -4,-2.9 4,-1.5 1,-0.2 -1,-0.2 0.781 116.8 50.3 -56.9 -27.5 -11.5 -3.4 -6.3 35 35 A K H >X S+ 0 0 88 -4,-1.5 4,-1.5 -5,-0.2 3,-0.6 0.980 116.8 39.5 -64.7 -59.0 -6.6 -4.6 -9.9 39 39 A M H >X S+ 0 0 123 -4,-2.7 4,-3.0 1,-0.3 3,-0.9 0.966 116.2 50.1 -55.2 -58.0 -6.9 -5.0 -13.7 40 40 A T H 3< S+ 0 0 58 -4,-1.1 -1,-0.3 -5,-0.5 -2,-0.2 0.709 107.4 59.5 -54.5 -20.7 -5.8 -1.4 -14.4 41 41 A W H << S+ 0 0 30 -4,-0.7 8,-1.0 -3,-0.6 3,-0.4 0.886 113.1 33.5 -76.2 -41.5 -2.9 -2.1 -12.0 42 42 A N H X< S+ 0 0 85 -4,-1.5 3,-1.3 -3,-0.9 -2,-0.2 0.742 108.0 69.2 -84.5 -25.8 -1.5 -5.0 -14.1 43 43 A N T 3< S+ 0 0 121 -4,-3.0 -1,-0.2 1,-0.3 -2,-0.2 0.596 101.5 49.0 -67.2 -10.2 -2.6 -3.3 -17.3 44 44 A M T > S- 0 0 67 -3,-0.4 3,-1.1 -5,-0.2 -1,-0.3 0.451 97.8-156.3-107.2 -4.7 0.1 -0.8 -16.5 45 45 A E G X> - 0 0 126 -3,-1.3 3,-0.8 1,-0.2 4,-0.8 -0.154 62.4 -16.1 60.5-158.4 2.8 -3.3 -15.8 46 46 A K G 34>S+ 0 0 149 1,-0.2 5,-1.1 3,-0.2 4,-0.4 0.723 127.0 75.9 -47.3 -27.3 5.8 -2.4 -13.6 47 47 A K G <>5S+ 0 0 118 -3,-1.1 4,-0.7 3,-0.2 -1,-0.2 0.963 112.4 15.5 -51.8 -61.6 4.9 1.3 -14.0 48 48 A E H <>5S+ 0 0 26 -3,-0.8 4,-3.1 -7,-0.3 5,-0.3 0.981 127.6 48.9 -75.7 -76.0 1.9 1.2 -11.6 49 49 A K H X5S+ 0 0 50 -8,-1.0 4,-1.3 -4,-0.8 -3,-0.2 0.825 118.8 37.6 -28.5 -70.8 2.3 -2.0 -9.6 50 50 A L H >>5S+ 0 0 91 -4,-0.4 3,-1.2 -5,-0.2 4,-1.0 0.952 118.7 46.5 -53.7 -60.4 6.0 -1.5 -8.7 51 51 A M H 3XX S+ 0 0 85 -4,-0.8 3,-2.2 -5,-0.3 4,-0.7 0.798 98.8 70.9 -79.6 -31.8 4.4 5.4 3.7 60 60 A Q H 3X S+ 0 0 9 -4,-2.2 4,-2.3 1,-0.3 3,-0.4 0.765 85.7 69.9 -56.5 -24.1 5.1 2.1 5.4 61 61 A K H 3X S+ 0 0 123 -4,-0.6 4,-1.2 -3,-0.3 -1,-0.3 0.832 92.5 57.5 -62.0 -32.6 8.0 3.9 7.1 62 62 A R H <4 S+ 0 0 171 -3,-2.2 -1,-0.2 -4,-0.2 -2,-0.2 0.834 107.9 46.0 -67.4 -34.0 5.4 5.8 9.0 63 63 A Y H >X S+ 0 0 45 -4,-0.7 3,-2.9 -3,-0.4 4,-0.8 0.887 101.6 64.7 -75.9 -41.3 3.9 2.6 10.4 64 64 A E H 3X S+ 0 0 72 -4,-2.3 4,-2.4 1,-0.3 -2,-0.2 0.872 95.5 59.4 -48.7 -41.5 7.3 1.2 11.3 65 65 A R H 3X S+ 0 0 166 -4,-1.2 4,-0.7 2,-0.2 -1,-0.3 0.691 98.8 64.8 -62.9 -17.0 7.7 4.0 13.8 66 66 A E H X4 S+ 0 0 12 -3,-2.9 3,-2.2 -65,-0.3 4,-0.3 0.991 110.9 27.5 -69.0 -76.4 4.6 2.6 15.4 67 67 A L H >X S+ 0 0 68 -4,-0.8 3,-3.6 1,-0.3 4,-1.0 0.915 108.4 79.4 -49.6 -44.1 5.7 -0.8 16.6 68 68 A S H 3< S+ 0 0 48 -4,-2.4 3,-0.5 1,-0.3 -1,-0.3 0.758 75.5 74.3 -30.4 -42.1 9.2 0.7 16.8 69 69 A E T << S+ 0 0 121 -3,-2.2 3,-0.5 -4,-0.7 -1,-0.3 0.857 104.3 36.5 -45.1 -42.3 8.0 2.2 20.1 70 70 A M T <4 S+ 0 0 181 -3,-3.6 -1,-0.3 -4,-0.3 -2,-0.2 0.695 110.9 62.9 -85.1 -21.7 8.4 -1.2 21.7 71 71 A R S < S+ 0 0 215 -4,-1.0 -1,-0.2 -3,-0.5 -2,-0.2 -0.152 82.5 89.1 -95.7 38.5 11.4 -2.0 19.6 72 72 A A > + 0 0 17 -3,-0.5 3,-2.1 1,-0.1 -1,-0.2 -0.440 36.7 153.3-133.0 61.2 13.4 0.8 21.2 73 73 A P G > S+ 0 0 99 0, 0.0 3,-0.7 0, 0.0 5,-0.3 0.921 86.5 40.2 -54.2 -45.8 15.1 -0.6 24.3 74 74 A P G 3 S+ 0 0 88 0, 0.0 5,-0.1 0, 0.0 -3,-0.0 0.007 110.5 63.8 -92.4 27.7 17.9 2.0 23.9 75 75 A A G < S+ 0 0 49 -3,-2.1 -4,-0.0 3,-0.1 -3,-0.0 0.040 98.3 48.5-137.0 24.3 15.3 4.6 23.0 76 76 A A S < S+ 0 0 54 -3,-0.7 6,-0.0 6,-0.0 -4,-0.0 0.032 126.9 10.5-154.2 30.4 13.3 4.9 26.2 77 77 A T S S+ 0 0 71 4,-0.0 5,-0.5 -3,-0.0 4,-0.2 0.156 131.1 39.2-174.8 -41.1 15.8 5.2 29.0 78 78 A N S S+ 0 0 131 -5,-0.3 -3,-0.1 3,-0.1 0, 0.0 0.844 126.0 33.8 -92.9 -42.7 19.2 5.8 27.5 79 79 A S S S+ 0 0 81 1,-0.1 -4,-0.1 -5,-0.1 -1,-0.0 0.783 125.6 43.5 -82.9 -29.8 18.3 8.1 24.7 80 80 A S S S- 0 0 67 2,-0.0 3,-0.4 0, 0.0 -1,-0.1 0.738 90.3-162.5 -85.5 -25.7 15.4 9.7 26.7 81 81 A K - 0 0 132 1,-0.2 2,-3.0 -4,-0.2 -3,-0.1 0.900 19.9-130.4 38.2 92.6 17.5 10.0 29.9 82 82 A K 0 0 176 -5,-0.5 -1,-0.2 -6,-0.0 -2,-0.0 -0.370 360.0 360.0 -69.1 70.9 14.9 10.5 32.6 83 83 A L 0 0 212 -2,-3.0 0, 0.0 -3,-0.4 0, 0.0 -0.955 360.0 360.0-160.5 360.0 16.7 13.5 34.1