==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 22-MAR-02 1L8Z . COMPND 2 MOLECULE: UPSTREAM BINDING FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.YANG,Y.XU,J.WU,W.ZENG,Y.SHI . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6408.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 73 88.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 54.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 6 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 42 0, 0.0 67,-0.2 0, 0.0 66,-0.2 0.000 360.0 360.0 360.0-135.2 6.9 -2.9 18.1 2 2 A K - 0 0 67 61,-0.2 65,-0.1 62,-0.2 66,-0.1 0.264 360.0 -91.0-100.0-151.2 3.5 -2.5 17.5 3 3 A L + 0 0 127 60,-0.1 61,-0.1 64,-0.0 60,-0.0 -0.128 59.4 137.4-137.5 8.0 0.4 -2.5 15.5 4 4 A P S S- 0 0 34 0, 0.0 60,-0.1 0, 0.0 59,-0.1 0.960 76.0 -58.1 -44.8 -75.1 0.3 1.1 14.4 5 5 A E - 0 0 118 58,-0.3 55,-0.1 55,-0.1 59,-0.0 0.305 42.1-142.2-131.9-110.9 -0.5 0.5 11.3 6 6 A S - 0 0 54 53,-0.1 54,-0.1 54,-0.0 55,-0.1 0.548 12.7-161.7 128.1 72.4 0.7 -1.3 8.4 7 7 A P - 0 0 11 0, 0.0 3,-0.1 0, 0.0 50,-0.1 0.194 17.8-137.4 -53.6-160.1 0.3 0.3 5.0 8 8 A K >> - 0 0 133 1,-0.2 2,-1.1 45,-0.1 3,-0.5 0.063 18.7-134.5-155.3 27.7 0.7 -2.3 2.3 9 9 A R H 3> S+ 0 0 100 47,-0.4 4,-1.2 1,-0.2 47,-0.8 -0.228 90.2 19.5 49.9 -90.6 2.7 -0.5 -0.3 10 10 A A H 3>>S+ 0 0 10 -2,-1.1 4,-2.1 2,-0.2 5,-0.5 0.991 132.4 34.1 -70.7 -80.2 0.8 -1.4 -3.4 11 11 A E H <4>S+ 0 0 113 -3,-0.5 5,-0.5 1,-0.2 4,-0.5 0.697 122.4 52.8 -50.8 -22.6 -2.7 -2.5 -2.5 12 12 A E H X5S+ 0 0 45 -4,-0.5 4,-1.3 3,-0.2 5,-0.5 0.979 111.5 36.9 -78.3 -68.6 -2.7 0.0 0.4 13 13 A I H X5S+ 0 0 21 -4,-1.2 4,-0.8 39,-0.3 -2,-0.2 0.918 130.0 33.8 -49.5 -53.4 -1.7 3.3 -1.2 14 14 A W H X5S+ 0 0 45 -4,-2.1 4,-3.0 -5,-0.4 5,-0.4 0.955 115.6 51.3 -73.1 -55.7 -3.6 2.7 -4.3 15 15 A Q H >>XS+ 0 0 34 -5,-0.5 4,-2.8 -4,-0.5 3,-1.0 0.953 116.6 41.0 -46.3 -69.8 -6.6 0.7 -3.1 16 16 A Q H 3X S+ 0 0 121 -3,-2.2 4,-1.4 -4,-0.2 -2,-0.2 0.740 121.0 50.9 -82.1 -25.5 -14.0 6.8 -5.6 22 22 A Y H X S+ 0 0 40 -4,-2.5 4,-0.6 2,-0.2 7,-0.3 0.867 114.1 41.7 -79.0 -38.9 -14.6 3.4 -7.0 23 23 A L H X>S+ 0 0 48 -4,-3.5 5,-2.6 -5,-0.3 4,-0.7 0.769 112.8 58.0 -75.9 -27.6 -16.9 2.3 -4.2 24 24 A A H <5S+ 0 0 64 -4,-0.9 -2,-0.2 -5,-0.3 -1,-0.2 0.878 93.1 65.1 -69.2 -43.6 -18.5 5.7 -4.2 25 25 A R H <5S+ 0 0 150 -4,-1.4 -1,-0.2 1,-0.3 -2,-0.2 0.844 123.2 16.4 -49.1 -43.1 -19.6 5.6 -7.8 26 26 A F H <5S- 0 0 137 -4,-0.6 -1,-0.3 -3,-0.1 -2,-0.2 0.360 106.1-116.5-115.0 0.2 -22.0 2.8 -7.1 27 27 A K T <5S+ 0 0 162 -4,-0.7 -3,-0.2 -5,-0.1 -4,-0.1 0.996 103.9 12.2 61.9 60.4 -22.1 3.0 -3.5 28 28 A N S > + 0 0 20 -6,-0.6 3,-4.0 -7,-0.3 4,-1.1 0.328 18.1 136.3 -85.3 4.4 -19.4 -1.3 -6.2 30 30 A R H 3> + 0 0 103 1,-0.3 4,-3.9 2,-0.2 5,-0.4 0.694 62.0 68.6 -18.9 -49.5 -16.3 -2.8 -4.7 31 31 A V H 3> S+ 0 0 117 -3,-0.4 4,-0.8 1,-0.3 -1,-0.3 0.888 112.2 32.1 -42.1 -47.5 -16.8 -5.7 -7.1 32 32 A K H <> S+ 0 0 126 -3,-4.0 4,-3.6 2,-0.2 -1,-0.3 0.805 116.1 58.6 -78.0 -37.1 -15.8 -3.2 -9.8 33 33 A A H X S+ 0 0 0 -4,-1.1 4,-1.9 1,-0.2 5,-0.3 0.943 103.4 51.0 -59.5 -52.3 -13.6 -1.2 -7.6 34 34 A L H X S+ 0 0 55 -4,-3.9 4,-2.5 1,-0.2 -1,-0.2 0.854 118.4 39.3 -54.9 -39.5 -11.3 -4.1 -6.9 35 35 A K H X>S+ 0 0 99 -4,-0.8 4,-2.6 -5,-0.4 5,-0.7 0.945 109.7 55.8 -76.5 -53.1 -11.0 -4.9 -10.6 36 36 A A H X5S+ 0 0 26 -4,-3.6 4,-0.5 1,-0.2 -2,-0.2 0.804 119.8 36.9 -49.6 -29.9 -10.8 -1.4 -11.9 37 37 A M H X5S+ 0 0 8 -4,-1.9 4,-0.9 -5,-0.2 -1,-0.2 0.867 119.4 46.6 -88.3 -46.0 -7.9 -1.2 -9.5 38 38 A E H >X5S+ 0 0 83 -4,-2.5 4,-2.0 -5,-0.3 3,-1.0 0.980 118.4 39.4 -62.1 -59.8 -6.5 -4.7 -9.9 39 39 A M H >X5S+ 0 0 120 -4,-2.6 4,-3.1 1,-0.3 3,-1.1 0.975 112.9 54.8 -51.3 -65.1 -6.6 -4.8 -13.6 40 40 A T H 3<4 S- 0 0 74 -5,-0.4 3,-0.5 -3,-0.2 -1,-0.2 0.811 95.6-153.9 -87.5 -33.9 0.4 -1.3 -16.5 45 45 A E G >X - 0 0 135 -4,-0.8 4,-1.2 -3,-0.3 3,-1.0 -0.383 57.3 -19.3 88.9-166.1 3.3 -3.4 -15.4 46 46 A K G 34>S+ 0 0 141 1,-0.3 5,-0.9 3,-0.2 4,-0.4 0.717 125.6 75.3 -46.7 -23.6 6.0 -2.6 -13.1 47 47 A K G <>5S+ 0 0 130 -3,-0.5 4,-0.7 3,-0.2 -1,-0.3 0.973 112.4 16.4 -55.4 -61.7 5.2 1.0 -13.8 48 48 A E H <>5S+ 0 0 53 -3,-1.0 4,-3.0 -7,-0.3 5,-0.3 0.981 128.8 50.5 -73.2 -68.0 2.2 1.2 -11.7 49 49 A K H X5S+ 0 0 41 -4,-1.2 4,-1.7 -8,-0.9 3,-0.4 0.854 114.2 40.5 -33.6 -72.8 2.6 -1.9 -9.6 50 50 A L H >5S+ 0 0 87 -4,-0.4 4,-1.5 1,-0.2 -1,-0.2 0.889 118.6 48.2 -49.2 -48.9 6.1 -1.4 -8.4 51 51 A M H XX S+ 0 0 93 -4,-0.7 3,-1.7 -5,-0.2 4,-0.6 0.747 99.0 75.7 -82.9 -30.0 4.2 5.6 3.9 60 60 A Q H 3X S+ 0 0 25 -4,-2.2 4,-2.5 1,-0.3 5,-0.2 0.683 81.5 73.5 -57.7 -20.7 4.8 2.2 5.7 61 61 A K H 3> S+ 0 0 131 -4,-0.5 4,-1.5 1,-0.2 -1,-0.3 0.816 88.6 54.9 -60.4 -41.9 7.6 3.8 7.4 62 62 A R H <4 S+ 0 0 177 -3,-1.7 4,-0.3 1,-0.2 -1,-0.2 0.810 112.9 42.2 -61.0 -39.0 5.6 5.8 9.6 63 63 A Y H >X S+ 0 0 24 -4,-0.6 4,-1.4 2,-0.2 3,-0.6 0.807 107.0 59.5 -84.2 -34.7 3.9 3.2 10.7 64 64 A E H 3X S+ 0 0 85 -4,-2.5 4,-3.0 1,-0.3 -2,-0.2 0.798 107.7 52.7 -58.3 -35.7 6.9 0.7 11.0 65 65 A R H 3X S+ 0 0 151 -4,-1.5 4,-1.9 2,-0.2 -1,-0.3 0.740 95.3 63.6 -73.8 -31.2 8.3 3.0 13.3 66 66 A E H <> S+ 0 0 69 -3,-0.6 4,-0.5 -4,-0.3 -2,-0.2 0.948 116.6 33.8 -59.3 -47.9 5.4 3.2 15.4 67 67 A L H >X S+ 0 0 33 -4,-1.4 3,-4.0 2,-0.2 4,-1.0 0.999 115.4 48.7 -67.3 -79.6 6.0 -0.3 16.1 68 68 A S H >< S+ 0 0 39 -4,-3.0 3,-3.3 1,-0.3 -3,-0.2 0.809 101.9 70.7 -28.4 -56.7 9.5 -0.7 16.1 69 69 A E H 3< S+ 0 0 92 -4,-1.9 -1,-0.3 1,-0.3 3,-0.3 0.667 95.1 55.8 -23.5 -47.5 9.7 2.3 18.3 70 70 A M H << S+ 0 0 112 -3,-4.0 -1,-0.3 -4,-0.5 -2,-0.2 0.908 120.5 27.2 -60.7 -45.1 8.3 0.3 20.8 71 71 A R S << S+ 0 0 161 -3,-3.3 4,-0.4 -4,-1.0 -1,-0.3 0.075 109.5 71.0-103.9 17.4 10.7 -2.0 20.5 72 72 A A + 0 0 0 3,-0.4 -1,-0.4 -5,-0.3 -2,-0.1 -0.444 51.4 137.9-134.0 51.2 12.7 0.2 19.5 73 73 A P S > S- 0 0 81 0, 0.0 4,-1.2 0, 0.0 8,-0.2 0.878 119.9 -2.7 -60.1 -46.6 12.9 1.6 22.9 74 74 A P T 4 S+ 0 0 37 0, 0.0 8,-2.8 0, 0.0 7,-1.7 0.599 116.4 73.6 -90.9 -62.0 16.3 1.6 21.7 75 75 A A T 4 S+ 0 0 31 5,-2.0 -3,-0.4 3,-0.4 -6,-0.2 0.920 123.2 32.1 -28.6 2.0 15.3 -0.3 18.0 76 76 A A T 4>S- 0 0 25 -7,-0.2 2,-2.0 -8,-0.2 5,-0.9 0.043 152.1 -2.5-126.5-163.2 14.8 3.7 19.9 77 77 A T T <5S+ 0 0 98 -4,-1.2 4,-0.1 -3,-0.5 6,-0.0 0.110 143.9 35.3 -73.7 99.8 18.4 3.7 22.1 78 78 A N T 5S- 0 0 120 -2,-2.0 3,-0.6 -6,-0.0 -3,-0.4 -0.112 139.7 -29.9 164.5 56.6 20.2 0.4 21.8 79 79 A S T 5S+ 0 0 88 -5,-0.4 2,-0.5 -3,-0.2 -2,-0.1 0.328 157.9 47.3-120.9-105.1 19.2 -0.5 17.3 80 80 A S T 5S+ 0 0 18 -4,-0.4 -5,-2.0 -11,-0.0 -3,-0.3 0.147 87.8 115.1 175.2 95.3 17.4 0.8 18.2 81 81 A K S