==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 10-JAN-11 2L8D . COMPND 2 MOLECULE: LAMIN-B RECEPTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; . AUTHOR S.LIOKATIS,C.EDLICH,K.SOUPSANA,I.GIANNIOS,M.SATTLER,S.D.GEOR . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4871.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 56.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 34.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 118 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 120.4 4.7 -5.0 -4.3 2 2 A A - 0 0 61 3,-0.1 2,-2.4 1,-0.1 7,-0.0 0.545 360.0-151.9-100.2 -14.3 6.0 -1.8 -2.9 3 3 A M S S+ 0 0 176 2,-0.1 2,-1.1 1,-0.1 -1,-0.1 -0.321 83.7 62.4 73.4 -55.9 5.6 0.0 -6.2 4 4 A G S S+ 0 0 26 -2,-2.4 -1,-0.1 1,-0.1 3,-0.1 -0.777 73.4 113.2 -99.4 86.8 8.4 2.4 -5.5 5 5 A M + 0 0 120 -2,-1.1 4,-0.2 1,-0.1 -2,-0.1 -0.546 13.7 148.5-159.0 79.3 11.3 0.0 -5.2 6 6 A P S S- 0 0 90 0, 0.0 3,-0.1 0, 0.0 5,-0.1 0.690 99.8 -52.1 -80.2 -20.8 14.2 0.1 -7.8 7 7 A N S S+ 0 0 118 1,-1.6 2,-0.2 3,-0.1 4,-0.1 -0.097 137.9 29.2 177.2 -48.9 16.7 -1.0 -5.1 8 8 A R S S- 0 0 48 2,-0.4 -1,-1.6 47,-0.0 3,-0.1 -0.353 104.7 -93.8-103.2-166.4 15.8 1.6 -2.5 9 9 A K S S+ 0 0 77 -4,-0.2 2,-0.3 -2,-0.2 -1,-0.0 0.795 112.6 29.3 -80.9 -28.6 12.4 3.2 -2.3 10 10 A Y S S- 0 0 19 1,-0.1 -2,-0.4 -5,-0.1 -3,-0.1 -0.840 82.5-120.8-125.6 162.6 13.7 6.0 -4.5 11 11 A A - 0 0 26 -2,-0.3 2,-0.4 -4,-0.1 -1,-0.1 -0.004 33.3-103.2 -84.2-167.8 16.3 6.2 -7.2 12 12 A D S S+ 0 0 101 1,-0.1 20,-0.2 29,-0.0 3,-0.1 -0.996 101.7 23.2-127.5 134.2 19.4 8.5 -7.2 13 13 A G S S+ 0 0 41 18,-2.3 2,-0.2 -2,-0.4 19,-0.1 0.256 95.3 133.4 94.8 -8.8 19.5 11.7 -9.2 14 14 A E - 0 0 85 16,-0.1 17,-3.1 1,-0.1 2,-0.5 -0.479 57.7-129.6 -78.4 138.0 15.8 11.6 -9.2 15 15 A V E +A 30 0A 49 15,-0.3 46,-0.4 -2,-0.2 15,-0.3 -0.804 43.1 152.9 -91.1 128.1 13.7 14.7 -8.3 16 16 A V E -A 29 0A 2 13,-2.8 13,-2.7 -2,-0.5 2,-0.5 -0.723 47.2 -92.1-135.5-175.2 11.1 14.0 -5.7 17 17 A M E -AB 28 59A 45 42,-2.8 42,-3.6 11,-0.2 2,-0.4 -0.933 41.4-170.9-107.9 132.7 9.1 15.7 -3.0 18 18 A G E -AB 27 58A 0 9,-3.0 9,-3.1 -2,-0.5 40,-0.2 -0.988 19.5-126.0-132.2 135.6 10.7 15.7 0.4 19 19 A R E -A 26 0A 63 38,-3.0 7,-0.3 -2,-0.4 5,-0.1 -0.477 28.1-115.5 -74.4 143.0 9.3 16.7 3.8 20 20 A W > - 0 0 108 5,-2.6 3,-2.3 -2,-0.2 5,-0.2 -0.767 30.3-123.1 -81.7 123.6 11.2 19.2 5.8 21 21 A P T 3 S+ 0 0 73 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.728 107.1 35.1 -36.8 -47.5 12.3 17.2 9.1 22 22 A G T 3 S+ 0 0 79 -3,-0.0 2,-0.2 3,-0.0 -2,-0.0 0.566 119.8 53.0 -90.3 -9.0 10.7 19.6 11.6 23 23 A S S < S- 0 0 47 -3,-2.3 -4,-0.0 2,-0.2 0, 0.0 -0.526 75.3-129.5-113.9 179.8 7.7 20.4 9.4 24 24 A V S S+ 0 0 118 -2,-0.2 2,-0.1 -5,-0.1 -1,-0.0 0.307 74.6 115.8-107.1 0.4 5.0 18.5 7.6 25 25 A L - 0 0 86 -5,-0.2 -5,-2.6 -6,-0.1 2,-0.5 -0.436 56.9-144.9 -73.8 145.1 5.7 20.6 4.5 26 26 A Y E -A 19 0A 65 -7,-0.3 -7,-0.3 -2,-0.1 2,-0.3 -0.933 17.1-176.7-113.4 131.2 7.0 19.0 1.4 27 27 A Y E -A 18 0A 119 -9,-3.1 -9,-3.0 -2,-0.5 2,-0.5 -0.717 35.7 -92.2-117.9 172.8 9.5 20.8 -0.8 28 28 A E E +A 17 0A 110 -2,-0.3 18,-0.7 -11,-0.2 2,-0.3 -0.769 53.0 164.4 -95.3 125.2 11.0 19.8 -4.1 29 29 A V E -AC 16 45A 2 -13,-2.7 -13,-2.8 -2,-0.5 2,-0.5 -0.884 32.6-134.7-135.3 163.3 14.3 18.0 -3.8 30 30 A Q E -AC 15 44A 97 14,-2.3 14,-2.9 -2,-0.3 2,-0.3 -0.991 28.2-122.4-122.4 130.1 16.6 15.9 -5.9 31 31 A V E + C 0 43A 2 -17,-3.1 -18,-2.3 -2,-0.5 12,-0.3 -0.545 36.1 166.0 -72.4 128.1 18.1 12.8 -4.4 32 32 A T E - 0 0 50 10,-3.0 2,-0.2 1,-0.3 11,-0.2 0.778 58.6 -3.5-108.8 -46.5 21.8 12.9 -4.4 33 33 A S E - C 0 42A 69 9,-1.9 9,-2.9 -21,-0.1 -1,-0.3 -0.820 56.9-139.3-144.3 179.5 23.0 10.1 -2.1 34 34 A Y E - C 0 41A 63 7,-0.3 2,-0.6 -2,-0.2 7,-0.2 -0.962 9.1-145.4-155.3 127.7 21.8 7.4 0.3 35 35 A D E > - C 0 40A 69 5,-3.5 5,-1.8 -2,-0.3 4,-0.2 -0.838 17.3-171.9 -88.4 122.7 22.8 5.9 3.6 36 36 A D T 5S+ 0 0 113 -2,-0.6 -1,-0.1 3,-0.2 5,-0.0 0.609 74.8 59.8 -96.3 -13.9 21.9 2.3 3.4 37 37 A A T 5S+ 0 0 74 1,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.947 124.0 16.9 -80.3 -52.3 22.6 1.4 7.0 38 38 A S T 5S- 0 0 72 2,-0.1 -2,-0.2 16,-0.0 -1,-0.1 0.445 108.8-118.1 -99.7 -1.0 20.2 3.7 8.7 39 39 A H T 5 + 0 0 94 -4,-0.2 16,-0.6 1,-0.2 2,-0.4 0.998 55.8 154.9 59.6 71.3 18.2 4.2 5.4 40 40 A L E < -CD 35 54A 43 -5,-1.8 -5,-3.5 14,-0.2 2,-0.5 -0.984 32.4-146.1-125.3 138.6 18.6 8.0 4.9 41 41 A Y E -CD 34 53A 5 12,-3.4 12,-2.6 -2,-0.4 2,-0.6 -0.904 7.6-144.8-108.9 130.0 18.4 9.7 1.6 42 42 A T E +CD 33 52A 41 -9,-2.9 -10,-3.0 -2,-0.5 -9,-1.9 -0.862 28.4 174.7 -93.3 128.6 20.6 12.7 1.0 43 43 A V E -CD 31 51A 0 8,-3.2 8,-2.8 -2,-0.6 2,-0.4 -0.868 25.2-132.7-130.4 159.7 18.7 15.2 -1.1 44 44 A K E -CD 30 50A 71 -14,-2.9 -14,-2.3 -2,-0.3 6,-0.3 -0.966 19.7-142.9-119.6 133.8 19.5 18.6 -2.4 45 45 A Y E > -C 29 0A 10 4,-3.3 3,-2.1 -2,-0.4 -16,-0.2 -0.428 30.4-104.8 -88.8 167.4 17.0 21.5 -2.2 46 46 A K T 3 S+ 0 0 194 -18,-0.7 -1,-0.1 1,-0.3 -17,-0.1 0.715 119.9 66.7 -61.1 -22.6 16.3 24.3 -4.7 47 47 A D T 3 S- 0 0 132 2,-0.2 -1,-0.3 1,-0.1 2,-0.2 0.404 116.4-114.9 -80.2 -0.1 18.2 26.5 -2.2 48 48 A G S < S+ 0 0 37 -3,-2.1 -2,-0.1 1,-0.3 -1,-0.1 -0.123 81.0 121.9 92.3 -37.5 21.4 24.6 -3.0 49 49 A T - 0 0 80 -2,-0.2 -4,-3.3 -5,-0.1 2,-0.3 -0.276 53.0-147.3 -58.9 135.0 21.4 23.2 0.6 50 50 A E E -D 44 0A 103 -6,-0.3 2,-0.3 -3,-0.1 -6,-0.3 -0.828 16.8-176.6-108.7 151.2 21.4 19.5 0.8 51 51 A L E -D 43 0A 48 -8,-2.8 -8,-3.2 -2,-0.3 2,-0.5 -0.925 23.2-126.7-139.9 159.3 19.8 17.6 3.6 52 52 A A E +D 42 0A 52 -2,-0.3 2,-0.3 -10,-0.3 -10,-0.2 -0.956 36.6 162.9-110.6 135.3 19.4 14.0 4.8 53 53 A L E -D 41 0A 3 -12,-2.6 -12,-3.4 -2,-0.5 2,-0.1 -0.897 37.2 -93.7-140.8 170.3 16.0 12.6 5.4 54 54 A K E > -D 40 0A 77 -2,-0.3 3,-1.6 -14,-0.2 4,-0.5 -0.438 34.2-114.0 -82.3 161.8 14.1 9.4 5.8 55 55 A E G > S+ 0 0 45 -16,-0.6 3,-1.2 1,-0.3 -1,-0.1 0.834 118.2 64.5 -60.9 -30.2 12.3 7.6 3.0 56 56 A S G 3 S+ 0 0 71 1,-0.3 -1,-0.3 -38,-0.0 -38,-0.0 0.610 99.0 53.7 -69.8 -12.0 9.2 8.3 5.0 57 57 A D G < S+ 0 0 21 -3,-1.6 -38,-3.0 -38,-0.1 2,-0.4 0.587 97.7 81.3 -95.8 -12.5 9.8 12.0 4.3 58 58 A I E < +B 18 0A 3 -3,-1.2 2,-0.3 -4,-0.5 -40,-0.3 -0.786 54.1 171.8-102.4 135.5 10.1 11.5 0.7 59 59 A R E -B 17 0A 138 -42,-3.6 -42,-2.8 -2,-0.4 4,-0.1 -0.852 42.1 -75.0-130.0 168.5 7.2 11.2 -1.7 60 60 A L - 0 0 63 -2,-0.3 3,-0.2 -44,-0.2 -44,-0.1 -0.219 44.0-110.4 -60.5 154.0 6.9 11.1 -5.5 61 61 A Q S S+ 0 0 113 -46,-0.4 2,-0.3 1,-0.3 -1,-0.1 0.837 113.1 10.7 -54.9 -34.6 7.3 14.4 -7.5 62 62 A S S S- 0 0 60 -45,-0.1 -1,-0.3 1,-0.0 -2,-0.0 -0.976 70.7-143.3-142.1 136.1 3.6 14.0 -8.0 63 63 A S S S+ 0 0 96 -2,-0.3 2,-1.1 -3,-0.2 -2,-0.1 0.628 90.4 82.9 -74.4 -11.2 1.5 11.5 -6.1 64 64 A F + 0 0 186 -4,-0.1 2,-0.4 2,-0.0 -1,-0.1 -0.807 63.4 163.6 -93.9 96.5 -0.4 11.2 -9.4 65 65 A K 0 0 164 -2,-1.1 -2,-0.0 -4,-0.0 -5,-0.0 -0.977 360.0 360.0-120.1 133.0 1.8 8.7 -11.3 66 66 A Q 0 0 240 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.997 360.0 360.0-137.9 360.0 0.7 6.8 -14.3