==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN/RNA 22-MAR-02 1L9A . COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE RNA S DOMAIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.OUBRIDGE,A.KUGLSTATTER,L.JOVINE,K.NAGAI . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5946.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 52.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 21.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 69 0, 0.0 65,-2.0 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 134.5 94.4 143.9 36.0 2 2 A I E -A 65 0A 59 63,-0.2 2,-0.7 2,-0.0 63,-0.2 -0.904 360.0-164.2-107.9 126.7 96.8 141.7 38.0 3 3 A I E -A 64 0A 1 61,-2.2 61,-1.6 -2,-0.5 31,-0.0 -0.910 4.3-164.4-112.6 101.2 99.6 139.8 36.2 4 4 A W > - 0 0 28 -2,-0.7 3,-2.1 59,-0.2 4,-0.2 -0.740 23.9-131.6 -79.1 127.9 101.1 137.1 38.4 5 5 A P G > S+ 0 0 14 0, 0.0 3,-1.9 0, 0.0 4,-0.3 0.800 103.9 69.7 -52.1 -34.3 104.5 136.0 36.9 6 6 A S G > S+ 0 0 9 1,-0.3 3,-0.9 2,-0.2 6,-0.1 0.759 83.0 74.6 -52.0 -29.7 103.4 132.3 37.2 7 7 A Y G < S+ 0 0 23 -3,-2.1 12,-2.2 1,-0.2 13,-1.5 0.727 108.5 28.4 -56.0 -24.9 100.8 133.1 34.5 8 8 A I G < S+ 0 0 0 -3,-1.9 18,-2.7 -4,-0.2 2,-0.5 0.267 87.1 122.8-124.5 10.5 103.6 133.0 31.9 9 9 A D B X -b 26 0B 23 -3,-0.9 3,-0.8 -4,-0.3 9,-0.2 -0.650 43.9-161.2 -79.8 124.4 106.3 130.7 33.3 10 10 A K T 3 S+ 0 0 87 16,-2.6 17,-0.2 -2,-0.5 -1,-0.2 0.755 89.7 61.2 -72.4 -25.2 107.1 127.8 31.0 11 11 A K T 3 S+ 0 0 157 15,-0.4 2,-0.4 16,-0.4 -1,-0.2 0.624 94.0 80.0 -77.6 -12.9 108.6 125.8 33.9 12 12 A K S < S- 0 0 36 -3,-0.8 5,-0.1 -6,-0.1 0, 0.0 -0.792 77.7-128.6-101.0 138.6 105.3 125.8 35.7 13 13 A S > - 0 0 43 -2,-0.4 5,-1.4 1,-0.1 3,-0.2 -0.048 32.8-100.8 -65.3 177.3 102.4 123.5 35.0 14 14 A R T > 5S+ 0 0 134 1,-0.2 3,-1.8 2,-0.2 -1,-0.1 0.944 123.9 50.5 -69.5 -49.6 98.9 124.7 34.4 15 15 A R T 3 5S+ 0 0 186 1,-0.3 -1,-0.2 2,-0.1 -3,-0.0 0.631 107.6 57.4 -60.9 -17.2 97.7 123.9 38.0 16 16 A E T 3 5S- 0 0 74 -3,-0.2 -1,-0.3 -10,-0.1 -2,-0.2 0.331 135.1 -74.2 -97.1 5.8 100.8 125.7 39.3 17 17 A G T < 5S+ 0 0 4 -3,-1.8 -3,-0.2 1,-0.3 -2,-0.1 -0.267 80.2 139.5 137.5 -55.5 99.9 129.0 37.5 18 18 A R < + 0 0 22 -5,-1.4 -1,-0.3 -9,-0.2 -11,-0.2 0.071 10.7 163.9 -38.2 117.8 100.5 128.9 33.8 19 19 A K + 0 0 84 -12,-2.2 -11,-0.2 -13,-0.1 -1,-0.2 0.556 56.6 77.3-105.7 -16.8 97.7 130.7 31.9 20 20 A V S S- 0 0 0 -13,-1.5 5,-0.1 1,-0.1 53,-0.0 -0.789 91.2 -99.1-102.8 137.7 99.6 131.0 28.6 21 21 A P >> - 0 0 31 0, 0.0 3,-1.2 0, 0.0 4,-0.9 0.039 36.4-107.4 -48.7 160.2 100.1 128.0 26.1 22 22 A E T 34 S+ 0 0 130 1,-0.3 3,-0.4 2,-0.2 -2,-0.0 0.828 116.4 58.8 -64.7 -33.8 103.4 126.1 26.1 23 23 A E T 34 S+ 0 0 161 1,-0.2 -1,-0.3 3,-0.0 -13,-0.0 0.649 114.5 36.7 -74.0 -15.3 104.6 127.6 22.8 24 24 A L T <4 S+ 0 0 45 -3,-1.2 -1,-0.2 2,-0.1 -2,-0.2 0.470 88.2 116.0-110.4 -9.6 104.4 131.2 24.2 25 25 A A < - 0 0 5 -4,-0.9 2,-0.3 -3,-0.4 -16,-0.2 -0.375 62.9-124.4 -71.4 144.3 105.5 130.6 27.8 26 26 A I B -b 9 0B 7 -18,-2.7 -16,-2.6 1,-0.1 -15,-0.4 -0.648 6.1-131.8 -96.4 145.4 108.7 132.3 28.9 27 27 A E S S+ 0 0 80 1,-0.3 -16,-0.4 -2,-0.3 -1,-0.1 0.936 96.4 3.1 -61.2 -56.7 111.8 130.6 30.4 28 28 A K S S- 0 0 178 -18,-0.1 -1,-0.3 -19,-0.1 -19,-0.1 -0.726 79.9-155.8-134.8 84.8 112.4 132.8 33.4 29 29 A P - 0 0 24 0, 0.0 2,-0.3 0, 0.0 -20,-0.1 -0.358 14.8-172.7 -61.2 135.9 109.7 135.5 33.7 30 30 A S > - 0 0 49 1,-0.1 4,-1.9 -2,-0.0 5,-0.2 -0.962 37.1-115.7-133.1 152.1 110.8 138.6 35.5 31 31 A L H > S+ 0 0 34 -2,-0.3 4,-2.1 1,-0.2 5,-0.1 0.770 117.0 53.4 -56.3 -28.3 108.9 141.7 36.7 32 32 A K H > S+ 0 0 123 2,-0.2 4,-3.5 1,-0.2 5,-0.3 0.951 105.2 51.8 -71.6 -51.6 111.1 143.8 34.3 33 33 A D H > S+ 0 0 49 1,-0.2 4,-2.0 2,-0.2 -2,-0.2 0.845 115.3 43.9 -47.4 -40.7 110.3 141.7 31.3 34 34 A I H X S+ 0 0 0 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.894 115.0 47.9 -75.8 -41.1 106.6 142.1 32.1 35 35 A E H X S+ 0 0 29 -4,-2.1 4,-1.5 -5,-0.2 -2,-0.2 0.875 114.7 46.7 -62.9 -39.6 107.0 145.9 32.9 36 36 A K H X S+ 0 0 121 -4,-3.5 4,-1.8 2,-0.2 -2,-0.2 0.941 113.2 46.6 -72.8 -49.7 109.0 146.4 29.6 37 37 A A H X S+ 0 0 2 -4,-2.0 4,-0.7 -5,-0.3 -1,-0.2 0.875 112.4 51.4 -57.0 -41.5 106.6 144.5 27.4 38 38 A L H <>S+ 0 0 0 -4,-2.0 5,-1.9 1,-0.2 3,-0.3 0.839 109.6 49.7 -67.8 -33.5 103.6 146.3 29.0 39 39 A K H ><5S+ 0 0 120 -4,-1.5 3,-1.3 1,-0.2 -1,-0.2 0.803 104.1 59.8 -72.9 -29.6 105.3 149.6 28.3 40 40 A K H 3<5S+ 0 0 124 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.694 100.9 55.9 -69.0 -21.4 105.9 148.5 24.7 41 41 A L T 3<5S- 0 0 64 -4,-0.7 -1,-0.3 -3,-0.3 -2,-0.2 0.316 123.6-106.3 -91.2 6.3 102.0 148.2 24.5 42 42 A G T < 5S+ 0 0 70 -3,-1.3 2,-0.2 1,-0.3 -3,-0.2 0.762 80.7 126.3 74.8 26.9 101.7 151.8 25.5 43 43 A L < - 0 0 37 -5,-1.9 -1,-0.3 25,-0.0 -2,-0.1 -0.618 61.5-119.7-111.7 172.2 100.4 150.9 29.0 44 44 A E - 0 0 135 -2,-0.2 23,-0.3 -3,-0.1 -5,-0.1 -0.870 28.7-162.9-121.1 96.1 101.5 151.9 32.5 45 45 A P - 0 0 16 0, 0.0 2,-0.3 0, 0.0 21,-0.2 -0.206 7.6-155.7 -71.4 167.3 102.7 149.0 34.7 46 46 A K - 0 0 129 19,-0.4 19,-0.5 2,-0.0 2,-0.2 -0.841 13.1-148.7-149.1 100.4 103.0 149.1 38.5 47 47 A I - 0 0 52 -2,-0.3 2,-0.3 17,-0.2 17,-0.2 -0.473 9.9-168.4 -76.5 143.9 105.5 146.6 40.0 48 48 A Y - 0 0 93 15,-1.4 -1,-0.0 -2,-0.2 15,-0.0 -0.785 3.8-177.1-132.6 84.7 104.9 145.2 43.5 49 49 A R S S+ 0 0 164 -2,-0.3 2,-1.2 13,-0.2 13,-0.4 0.900 73.7 60.4 -52.6 -50.3 108.0 143.4 44.6 50 50 A D S S+ 0 0 104 11,-0.1 2,-0.2 12,-0.1 -1,-0.2 -0.683 80.8 93.4 -87.1 93.3 106.6 142.2 47.9 51 51 A K - 0 0 99 -2,-1.2 2,-0.4 6,-0.0 -3,-0.1 -0.819 54.8-150.7-177.6 136.6 103.6 140.0 47.0 52 52 A R - 0 0 126 -2,-0.2 8,-0.1 8,-0.1 5,-0.1 -0.972 20.9-117.7-131.9 130.8 103.4 136.2 46.5 53 53 A Y > - 0 0 26 -2,-0.4 3,-2.3 8,-0.4 6,-0.2 -0.424 29.4-132.1 -58.2 121.9 101.2 133.9 44.4 54 54 A P G > S+ 0 0 97 0, 0.0 3,-1.1 0, 0.0 -1,-0.1 0.776 105.4 62.8 -49.1 -32.0 99.3 131.7 46.9 55 55 A R G 3 S+ 0 0 133 1,-0.3 3,-0.1 2,-0.1 -2,-0.1 0.620 118.5 28.7 -72.6 -13.4 100.2 128.6 44.9 56 56 A Q G X S+ 0 0 8 -3,-2.3 3,-1.6 3,-0.1 -1,-0.3 -0.364 73.3 156.1-135.8 58.7 103.8 129.4 45.7 57 57 A H T < S+ 0 0 129 -3,-1.1 -2,-0.1 1,-0.3 -1,-0.1 0.869 71.6 62.5 -50.3 -40.7 103.6 131.3 49.0 58 58 A W T 3 S+ 0 0 169 -4,-0.1 2,-0.6 1,-0.1 -1,-0.3 0.814 95.1 73.0 -56.4 -29.5 107.2 130.3 49.9 59 59 A E < - 0 0 86 -3,-1.6 2,-1.4 -6,-0.2 -6,-0.3 -0.777 67.8-155.7 -99.8 115.7 108.5 132.3 46.8 60 60 A I + 0 0 81 -2,-0.6 2,-0.7 -8,-0.1 -8,-0.1 -0.580 34.7 149.4 -89.1 75.8 108.5 136.2 46.8 61 61 A A - 0 0 43 -2,-1.4 -8,-0.4 1,-0.2 -55,-0.2 -0.910 43.5-131.9-110.0 103.9 108.3 136.9 43.1 62 62 A G - 0 0 2 -2,-0.7 -1,-0.2 -13,-0.4 2,-0.2 0.728 13.5-130.7 -23.0-145.1 106.4 140.2 42.8 63 63 A R - 0 0 47 -59,-0.1 -15,-1.4 -58,-0.1 2,-0.2 -0.750 8.8-135.1 176.6 136.6 103.5 141.0 40.5 64 64 A V E -A 3 0A 0 -61,-1.6 -61,-2.2 -17,-0.2 2,-0.3 -0.597 14.7-152.8 -99.2 165.6 102.7 143.9 38.1 65 65 A E E -A 2 0A 42 -19,-0.5 -19,-0.4 -63,-0.2 2,-0.3 -0.998 11.9-180.0-142.2 136.7 99.4 145.7 37.6 66 66 A V - 0 0 7 -65,-2.0 -23,-0.0 -2,-0.3 -2,-0.0 -0.954 34.9-130.1-135.4 155.4 97.9 147.6 34.7 67 67 A D + 0 0 144 -23,-0.3 -1,-0.1 -2,-0.3 -24,-0.0 0.713 61.8 137.1 -74.0 -21.2 94.7 149.5 34.0 68 68 A Y - 0 0 77 -67,-0.1 2,-0.4 1,-0.1 -2,-0.1 0.195 36.8-165.1 -31.4 134.9 94.1 147.5 30.7 69 69 A K + 0 0 184 2,-0.0 2,-0.2 -68,-0.0 -1,-0.1 -0.807 50.1 82.6-131.1 89.3 90.6 146.3 30.1 70 70 A G S S- 0 0 22 -2,-0.4 2,-0.7 0, 0.0 3,-0.1 -0.658 95.1 -28.1-148.4-146.7 90.5 143.6 27.4 71 71 A N > - 0 0 104 -2,-0.2 4,-3.0 1,-0.2 5,-0.2 -0.711 50.1-153.2 -77.4 114.9 91.0 139.9 27.4 72 72 A K H > S+ 0 0 56 -2,-0.7 4,-2.6 1,-0.2 -1,-0.2 0.924 99.3 50.0 -51.2 -45.7 93.4 139.2 30.3 73 73 A L H > S+ 0 0 54 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.947 109.1 50.1 -59.9 -49.0 94.5 136.1 28.3 74 74 A C H > S+ 0 0 57 1,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.946 111.3 49.4 -53.8 -51.4 95.0 138.1 25.1 75 75 A L H X S+ 0 0 4 -4,-3.0 4,-1.9 1,-0.2 5,-0.2 0.932 112.2 48.3 -53.2 -49.1 97.1 140.6 27.0 76 76 A L H X S+ 0 0 0 -4,-2.6 4,-1.2 1,-0.2 -1,-0.2 0.896 110.6 49.6 -60.6 -45.2 99.1 137.8 28.5 77 77 A K H X S+ 0 0 75 -4,-2.9 4,-1.6 1,-0.2 -1,-0.2 0.857 112.0 51.0 -59.6 -36.6 99.7 136.1 25.2 78 78 A E H X S+ 0 0 75 -4,-2.3 4,-1.6 -5,-0.3 -2,-0.2 0.839 108.2 48.8 -72.5 -35.6 100.8 139.4 23.7 79 79 A I H X S+ 0 0 0 -4,-1.9 4,-1.2 1,-0.2 -1,-0.2 0.684 110.0 55.1 -77.7 -19.9 103.3 140.2 26.5 80 80 A A H X S+ 0 0 4 -4,-1.2 4,-0.6 -5,-0.2 -2,-0.2 0.868 106.8 48.9 -76.0 -39.9 104.6 136.7 26.0 81 81 A K H >< S+ 0 0 112 -4,-1.6 3,-0.6 1,-0.2 -2,-0.2 0.861 109.1 53.7 -68.6 -35.9 105.2 137.3 22.2 82 82 A I H 3< S+ 0 0 51 -4,-1.6 3,-0.3 1,-0.2 -1,-0.2 0.930 97.4 64.5 -62.3 -47.3 107.0 140.6 22.9 83 83 A I H 3< S+ 0 0 37 -4,-1.2 2,-0.4 1,-0.2 -1,-0.2 0.702 107.9 41.5 -55.9 -25.0 109.5 139.0 25.4 84 84 A K << + 0 0 105 -4,-0.6 -1,-0.2 -3,-0.6 3,-0.1 -0.796 63.5 118.4-129.9 93.5 111.0 136.9 22.6 85 85 A G S S+ 0 0 76 -2,-0.4 2,-0.1 1,-0.3 -1,-0.1 -0.013 86.3 26.9-133.3 24.4 111.6 138.5 19.2 86 86 A K 0 0 182 -3,-0.1 -1,-0.3 0, 0.0 0, 0.0 -0.475 360.0 360.0 175.3 109.6 115.4 138.1 19.1 87 87 A N 0 0 203 -2,-0.1 -3,-0.0 -3,-0.1 0, 0.0 -0.145 360.0 360.0 -59.8 360.0 117.4 135.4 20.9