==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-FEB-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 22-FEB-11 2L9R . COMPND 2 MOLECULE: HOMEOBOX PROTEIN NKX-3.1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.LIU,R.XIAO,H.-W.LEE,K.HAMILTON,C.CICCOSANTI,H.B.WANG,T.B.A . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5780.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 60.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 44.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 248 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 164.8 3.4 -24.4 3.9 2 2 A G - 0 0 56 3,-0.0 2,-0.7 0, 0.0 3,-0.1 -0.982 360.0 -14.9 162.9-155.2 4.3 -20.7 3.9 3 3 A H - 0 0 135 -2,-0.3 3,-0.2 1,-0.2 0, 0.0 -0.764 47.2-159.6 -84.7 109.1 5.1 -17.7 1.7 4 4 A H S S+ 0 0 189 -2,-0.7 2,-0.3 1,-0.2 -1,-0.2 0.802 84.0 12.0 -57.8 -33.9 5.9 -19.1 -1.9 5 5 A H S S+ 0 0 130 -3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.936 76.8 165.1-149.6 123.1 7.8 -15.8 -2.7 6 6 A H + 0 0 123 -2,-0.3 2,-0.3 -3,-0.2 -3,-0.0 -0.972 15.0 111.4-149.2 125.6 8.8 -13.0 -0.2 7 7 A H S S- 0 0 115 -2,-0.3 2,-0.9 0, 0.0 43,-0.1 -0.949 72.4 -66.3-169.4 174.6 11.2 -10.0 -0.2 8 8 A H - 0 0 145 -2,-0.3 2,-0.2 42,-0.1 39,-0.0 -0.676 62.0-128.5 -72.1 104.1 11.2 -6.1 -0.2 9 9 A S - 0 0 19 -2,-0.9 2,-2.1 1,-0.1 -1,-0.1 -0.402 2.1-136.3 -64.1 123.6 9.6 -5.4 -3.6 10 10 A H - 0 0 188 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.0 -0.521 40.4-172.5 -76.1 68.2 11.6 -3.0 -5.8 11 11 A M - 0 0 36 -2,-2.1 2,-0.1 1,-0.1 5,-0.0 -0.216 26.1 -94.4 -68.0 158.1 8.4 -1.2 -6.8 12 12 A S > - 0 0 76 1,-0.1 4,-2.2 4,-0.0 5,-0.2 -0.421 28.6-119.6 -78.6 149.9 8.2 1.6 -9.5 13 13 A H H > S+ 0 0 161 1,-0.2 4,-1.4 2,-0.2 -1,-0.1 0.881 115.8 44.8 -58.0 -44.1 8.4 5.3 -8.5 14 14 A T H > S+ 0 0 100 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.827 111.9 53.7 -68.3 -34.5 4.9 6.2 -9.9 15 15 A Q H > S+ 0 0 42 2,-0.2 4,-1.6 1,-0.2 -2,-0.2 0.863 105.7 52.7 -66.7 -38.5 3.5 3.0 -8.2 16 16 A V H X S+ 0 0 33 -4,-2.2 4,-2.1 2,-0.2 -2,-0.2 0.833 103.0 58.8 -66.7 -33.5 5.0 4.2 -4.9 17 17 A I H X S+ 0 0 58 -4,-1.4 4,-1.6 2,-0.2 -1,-0.2 0.906 106.0 48.7 -58.3 -42.9 3.1 7.5 -5.4 18 18 A E H X S+ 0 0 75 -4,-1.3 4,-1.7 2,-0.2 -2,-0.2 0.864 109.6 51.3 -64.5 -40.8 -0.2 5.5 -5.6 19 19 A L H X S+ 0 0 0 -4,-1.6 4,-2.0 1,-0.2 -2,-0.2 0.883 112.3 47.2 -59.0 -41.9 0.9 3.6 -2.3 20 20 A E H X S+ 0 0 77 -4,-2.1 4,-2.3 2,-0.2 -2,-0.2 0.731 107.4 56.0 -74.3 -28.3 1.5 7.2 -0.7 21 21 A R H X S+ 0 0 172 -4,-1.6 4,-1.0 2,-0.2 -1,-0.2 0.856 112.2 42.7 -68.2 -38.4 -1.9 8.4 -2.1 22 22 A K H X S+ 0 0 48 -4,-1.7 4,-2.3 2,-0.2 -2,-0.2 0.889 115.8 49.8 -69.7 -42.3 -3.6 5.5 -0.2 23 23 A F H < S+ 0 0 28 -4,-2.0 -2,-0.2 1,-0.2 -3,-0.2 0.878 104.3 58.1 -63.6 -44.2 -1.3 6.1 2.9 24 24 A S H < S+ 0 0 92 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.864 114.7 36.9 -56.0 -41.0 -2.1 9.9 3.0 25 25 A H H < S+ 0 0 159 -4,-1.0 2,-0.3 1,-0.3 -2,-0.2 0.884 135.8 11.8 -79.8 -44.7 -5.9 9.2 3.4 26 26 A Q < - 0 0 50 -4,-2.3 -1,-0.3 -5,-0.1 3,-0.0 -0.989 55.3-162.0-142.3 128.2 -5.5 6.0 5.6 27 27 A K S S+ 0 0 88 -2,-0.3 2,-0.4 -3,-0.2 29,-0.1 0.740 80.9 53.2 -79.9 -26.7 -2.3 4.8 7.4 28 28 A Y - 0 0 168 -5,-0.1 2,-0.4 25,-0.0 -1,-0.1 -0.954 67.2-160.7-116.7 127.0 -3.6 1.2 8.0 29 29 A L - 0 0 29 -2,-0.4 2,-0.1 19,-0.1 -6,-0.0 -0.917 7.1-153.6-101.3 133.5 -5.1 -1.2 5.3 30 30 A S > - 0 0 72 -2,-0.4 4,-2.4 1,-0.0 5,-0.2 -0.413 46.6 -81.1 -84.4 176.8 -7.3 -4.2 6.3 31 31 A A H > S+ 0 0 49 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.849 130.4 48.2 -50.2 -46.1 -7.5 -7.3 4.0 32 32 A P H > S+ 0 0 91 0, 0.0 4,-2.2 0, 0.0 -1,-0.2 0.955 116.6 41.0 -58.8 -52.7 -10.1 -5.6 1.5 33 33 A E H > S+ 0 0 53 1,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.824 117.1 50.1 -65.1 -34.7 -8.1 -2.2 1.1 34 34 A R H X S+ 0 0 55 -4,-2.4 4,-1.8 2,-0.2 -1,-0.2 0.890 114.3 42.1 -72.2 -44.6 -4.8 -4.1 0.9 35 35 A A H X S+ 0 0 34 -4,-2.1 4,-2.5 -5,-0.2 5,-0.2 0.837 115.0 52.4 -69.7 -38.4 -6.0 -6.7 -1.8 36 36 A H H X S+ 0 0 96 -4,-2.2 4,-1.8 -5,-0.2 -2,-0.2 0.934 113.3 41.9 -62.6 -50.2 -7.7 -3.8 -3.7 37 37 A L H X S+ 0 0 10 -4,-2.1 4,-1.5 2,-0.2 6,-0.3 0.854 114.3 55.7 -66.2 -35.9 -4.6 -1.6 -3.8 38 38 A A H ><>S+ 0 0 4 -4,-1.8 5,-1.9 2,-0.2 3,-0.7 0.983 110.6 40.6 -57.2 -61.5 -2.5 -4.8 -4.6 39 39 A K H 3<5S+ 0 0 139 -4,-2.5 3,-0.4 1,-0.2 -2,-0.2 0.817 112.0 57.5 -63.0 -33.8 -4.5 -5.8 -7.7 40 40 A N H 3<5S+ 0 0 97 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.838 119.6 30.5 -62.5 -37.0 -4.8 -2.1 -8.9 41 41 A L T <<5S- 0 0 24 -4,-1.5 -1,-0.2 -3,-0.7 -2,-0.2 0.301 113.2-118.0-101.5 5.1 -0.9 -1.9 -8.9 42 42 A K T 5S+ 0 0 187 -4,-0.5 -3,-0.2 -3,-0.4 -4,-0.1 0.538 74.5 131.4 62.4 12.9 -0.5 -5.7 -9.8 43 43 A L < - 0 0 22 -5,-1.9 2,-0.3 -6,-0.3 -1,-0.2 -0.123 59.0-107.5 -77.1 177.5 1.3 -6.1 -6.3 44 44 A T > - 0 0 45 -3,-0.1 4,-2.2 1,-0.1 5,-0.2 -0.783 23.7-114.6-105.2 156.2 0.6 -8.8 -3.6 45 45 A E H > S+ 0 0 78 -2,-0.3 4,-2.0 1,-0.2 5,-0.1 0.842 119.5 55.6 -53.1 -37.8 -1.2 -8.2 -0.2 46 46 A T H > S+ 0 0 34 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.968 107.6 45.6 -57.3 -57.6 2.3 -9.2 1.3 47 47 A Q H > S+ 0 0 38 1,-0.2 4,-2.0 2,-0.2 -2,-0.2 0.870 115.5 46.9 -56.4 -45.4 4.3 -6.4 -0.6 48 48 A V H X S+ 0 0 0 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.878 112.8 50.0 -63.2 -40.3 1.6 -3.7 0.2 49 49 A K H X S+ 0 0 102 -4,-2.0 4,-1.7 -5,-0.2 -2,-0.2 0.862 109.8 50.8 -68.6 -37.7 1.6 -4.8 3.9 50 50 A I H X S+ 0 0 15 -4,-2.4 4,-2.5 2,-0.2 -2,-0.2 0.908 111.8 48.8 -62.8 -44.7 5.5 -4.6 4.0 51 51 A W H X S+ 0 0 16 -4,-2.0 4,-2.6 2,-0.2 5,-0.2 0.968 112.4 44.9 -61.3 -57.9 5.3 -1.1 2.5 52 52 A F H X S+ 0 0 8 -4,-2.5 4,-1.2 1,-0.2 -1,-0.2 0.806 114.4 52.3 -58.6 -33.2 2.6 0.3 5.0 53 53 A Q H X S+ 0 0 99 -4,-1.7 4,-1.3 -5,-0.2 3,-0.2 0.965 112.2 44.4 -60.1 -55.4 4.6 -1.4 7.8 54 54 A N H X S+ 0 0 36 -4,-2.5 4,-1.8 1,-0.2 15,-0.3 0.881 110.8 52.6 -61.1 -44.7 7.9 0.3 6.8 55 55 A R H X S+ 0 0 69 -4,-2.6 4,-0.9 1,-0.2 -1,-0.2 0.821 112.3 45.4 -65.1 -33.4 6.4 3.8 6.2 56 56 A R H < S+ 0 0 79 -4,-1.2 -1,-0.2 -3,-0.2 -2,-0.2 0.700 115.1 48.9 -79.1 -23.1 4.8 3.8 9.7 57 57 A Y H < S+ 0 0 134 -4,-1.3 12,-1.0 -3,-0.2 -2,-0.2 0.682 115.1 44.8 -83.4 -26.1 8.2 2.5 11.1 58 58 A K H < S+ 0 0 111 -4,-1.8 -2,-0.2 10,-0.3 2,-0.2 0.604 97.1 91.8 -90.8 -19.2 10.1 5.2 9.1 59 59 A T S < S- 0 0 69 -4,-0.9 2,-0.8 -5,-0.2 8,-0.2 -0.528 95.0 -91.0 -84.0 150.1 7.7 8.1 10.1 60 60 A K - 0 0 138 -2,-0.2 2,-0.3 6,-0.1 -1,-0.1 -0.424 54.3-177.6 -62.7 97.0 8.3 10.3 13.2 61 61 A R - 0 0 114 -2,-0.8 2,-1.1 6,-0.2 6,-0.6 -0.748 34.7-107.0 -96.7 151.2 6.4 8.4 16.0 62 62 A K S S+ 0 0 214 -2,-0.3 2,-0.1 4,-0.1 4,-0.1 -0.670 70.7 119.5 -79.9 96.7 6.0 9.6 19.7 63 63 A Q S S- 0 0 83 -2,-1.1 3,-0.1 2,-0.1 -3,-0.0 -0.391 88.4 -66.9-126.5-155.2 8.3 7.3 21.7 64 64 A L S S+ 0 0 177 1,-0.2 2,-0.3 -2,-0.1 -2,-0.1 0.750 126.0 8.4 -66.3 -29.6 11.4 7.7 23.9 65 65 A S S S- 0 0 82 -4,-0.1 2,-0.5 0, 0.0 -1,-0.2 -0.967 100.2 -78.3-148.5 160.5 13.0 8.8 20.5 66 66 A S - 0 0 48 -2,-0.3 2,-1.2 -3,-0.1 -6,-0.1 -0.482 43.3-136.3 -66.0 112.0 11.9 9.5 16.9 67 67 A E + 0 0 31 -6,-0.6 2,-0.6 -2,-0.5 -6,-0.2 -0.587 36.6 163.6 -75.5 93.3 11.4 6.1 15.1 68 68 A L 0 0 123 -2,-1.2 -10,-0.3 -8,-0.1 -9,-0.1 -0.855 360.0 360.0-115.0 91.0 13.1 6.7 11.7 69 69 A G 0 0 64 -12,-1.0 -11,-0.0 -2,-0.6 -2,-0.0 -0.347 360.0 360.0 -62.8 360.0 13.7 3.2 10.0