==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 01-MAR-11 2LA4 . COMPND 2 MOLECULE: NUCLEAR AND CYTOPLASMIC POLYADENYLATED RNA-BINDIN . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR C.M.SANTIVERI,Y.MIRASSOU,P.RICO-LASTRES,S.MARTINEZ-LUMBRERAS . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6994.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 61.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 16.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 20.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 314 A G 0 0 132 0, 0.0 2,-0.0 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 148.5 -28.2 -0.6 15.6 2 315 A S - 0 0 108 1,-0.1 2,-1.3 2,-0.0 0, 0.0 -0.342 360.0-100.9 -67.8 147.9 -26.2 2.5 14.7 3 316 A Q + 0 0 194 1,-0.1 2,-0.3 -2,-0.0 -1,-0.1 -0.561 64.9 144.5 -73.5 95.1 -24.5 2.6 11.3 4 317 A T + 0 0 125 -2,-1.3 2,-0.4 2,-0.0 -1,-0.1 -0.772 11.8 138.2-138.5 91.6 -20.9 1.8 12.3 5 318 A I - 0 0 134 -2,-0.3 2,-0.6 2,-0.0 -2,-0.0 -0.998 34.0-154.4-138.5 133.6 -18.9 -0.3 9.8 6 319 A G + 0 0 50 -2,-0.4 -2,-0.0 2,-0.0 0, 0.0 -0.900 16.4 170.9-112.5 108.8 -15.3 -0.0 8.6 7 320 A L - 0 0 142 -2,-0.6 5,-0.1 5,-0.1 4,-0.1 -0.687 15.8-175.2-116.5 77.5 -14.5 -1.5 5.2 8 321 A P - 0 0 62 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.257 34.0-121.7 -69.8 157.4 -11.0 -0.3 4.4 9 322 A P S S+ 0 0 124 0, 0.0 2,-0.4 0, 0.0 3,-0.0 0.784 98.3 49.3 -69.7 -28.3 -9.3 -1.1 1.0 10 323 A Q S S+ 0 0 129 1,-0.1 72,-0.1 2,-0.0 0, 0.0 -0.923 107.7 6.9-117.6 140.7 -6.4 -2.9 2.7 11 324 A V S S- 0 0 38 -2,-0.4 67,-0.1 1,-0.1 -1,-0.1 0.498 74.7-111.8 67.6 142.1 -6.7 -5.6 5.4 12 325 A N > - 0 0 86 66,-0.1 4,-1.1 1,-0.1 5,-0.1 -0.924 6.8-150.9-113.3 130.5 -10.0 -7.2 6.5 13 326 A P H > S+ 0 0 66 0, 0.0 4,-1.1 0, 0.0 -1,-0.1 0.636 93.2 64.7 -69.8 -14.1 -11.5 -6.7 9.9 14 327 A Q H >> S+ 0 0 156 2,-0.2 3,-1.1 1,-0.2 4,-0.9 0.994 105.8 34.8 -72.0 -71.9 -13.1 -10.1 9.6 15 328 A A H 34 S+ 0 0 64 1,-0.3 4,-0.4 2,-0.2 -1,-0.2 0.763 121.0 54.0 -54.9 -25.1 -10.1 -12.5 9.5 16 329 A V H >X S+ 0 0 6 -4,-1.1 4,-1.3 1,-0.2 3,-1.0 0.790 92.1 70.8 -80.0 -29.8 -8.5 -10.0 11.9 17 330 A D H < S+ 0 0 25 -4,-1.3 3,-2.4 1,-0.3 -1,-0.2 0.887 99.7 67.1 -55.5 -41.6 -8.2 -10.1 19.0 21 334 A R T 3< S+ 0 0 207 -4,-1.5 -1,-0.3 1,-0.3 -2,-0.2 0.686 94.4 61.5 -54.0 -16.7 -10.3 -13.0 20.3 22 335 A S T < S+ 0 0 93 -3,-2.1 -1,-0.3 -4,-0.4 -2,-0.2 0.061 114.3 26.4 -98.6 23.5 -6.9 -14.5 21.2 23 336 A A S < S- 0 0 24 -3,-2.4 -1,-0.0 4,-0.0 0, 0.0 -0.959 91.4 -80.6-175.0 159.1 -6.0 -11.6 23.5 24 337 A P - 0 0 75 0, 0.0 -2,-0.1 0, 0.0 -3,-0.0 -0.326 33.2-125.5 -69.7 150.2 -7.5 -8.8 25.7 25 338 A P S S+ 0 0 92 0, 0.0 48,-0.4 0, 0.0 49,-0.1 0.638 105.5 64.8 -69.8 -14.2 -8.9 -5.6 24.3 26 339 A R S S+ 0 0 220 47,-0.1 47,-0.0 46,-0.1 -3,-0.0 0.987 85.2 74.1 -72.4 -63.1 -6.5 -3.7 26.6 27 340 A V - 0 0 50 1,-0.1 -4,-0.0 46,-0.0 42,-0.0 -0.163 56.4-177.4 -52.6 143.8 -3.2 -4.7 25.3 28 341 A T + 0 0 11 42,-0.1 42,-2.1 48,-0.1 2,-0.4 -0.459 30.4 123.5-147.0 68.1 -2.2 -3.1 22.0 29 342 A T E -A 69 0A 25 40,-0.2 69,-1.1 69,-0.1 2,-0.6 -0.992 45.9-143.5-133.8 139.5 1.2 -4.5 20.7 30 343 A A E -AB 68 97A 0 38,-2.6 38,-2.1 -2,-0.4 2,-0.6 -0.894 12.6-158.6-105.8 121.8 2.2 -6.2 17.5 31 344 A Y E -A 67 0A 52 65,-3.0 2,-0.6 -2,-0.6 65,-0.4 -0.873 7.8-173.2-102.9 122.1 4.8 -8.9 17.6 32 345 A I E -A 66 0A 0 34,-2.4 34,-1.6 -2,-0.6 63,-0.2 -0.940 7.3-176.7-118.6 112.9 6.7 -9.8 14.4 33 346 A G E +A 65 0A 1 -2,-0.6 61,-2.5 32,-0.2 32,-0.2 -0.520 54.7 53.2-102.2 171.8 9.0 -12.8 14.4 34 347 A N S S+ 0 0 87 30,-1.3 -1,-0.2 59,-0.2 31,-0.2 0.926 70.4 163.0 71.4 46.6 11.3 -14.2 11.8 35 348 A I - 0 0 15 29,-1.0 -1,-0.2 -3,-0.2 4,-0.1 -0.822 34.8-121.9-102.8 137.2 13.2 -10.9 11.2 36 349 A P > - 0 0 11 0, 0.0 3,-1.0 0, 0.0 28,-0.1 -0.201 22.0-114.6 -69.8 163.5 16.6 -10.8 9.4 37 350 A H T 3 S+ 0 0 164 1,-0.3 27,-0.0 25,-0.1 25,-0.0 0.750 115.2 62.6 -70.5 -24.1 19.7 -9.3 11.0 38 351 A F T 3 S+ 0 0 103 1,-0.1 2,-0.7 2,-0.0 -1,-0.3 -0.007 79.1 108.1 -90.7 29.5 19.7 -6.6 8.4 39 352 A A < + 0 0 0 -3,-1.0 2,-0.2 -4,-0.1 25,-0.1 -0.866 45.7 173.4-112.6 99.1 16.3 -5.3 9.6 40 353 A T >> - 0 0 68 -2,-0.7 4,-1.3 1,-0.1 3,-1.0 -0.511 45.7-110.0 -99.2 169.5 16.6 -2.0 11.5 41 354 A E H 3> S+ 0 0 97 1,-0.2 4,-2.0 2,-0.2 6,-0.2 0.807 113.9 69.7 -67.3 -29.8 13.9 0.3 12.9 42 355 A A H 34 S+ 0 0 78 1,-0.2 -1,-0.2 2,-0.2 -3,-0.0 0.773 115.1 26.5 -59.0 -26.0 14.7 2.8 10.2 43 356 A D H <4 S+ 0 0 102 -3,-1.0 -1,-0.2 3,-0.1 -2,-0.2 0.515 131.7 40.6-111.8 -13.1 13.2 0.4 7.7 44 357 A L H X S+ 0 0 0 -4,-1.3 4,-1.3 2,-0.1 3,-0.5 0.851 104.5 59.9 -99.9 -53.2 10.8 -1.4 10.1 45 358 A I H >X S+ 0 0 48 -4,-2.0 4,-2.4 1,-0.3 3,-0.8 0.893 113.6 40.9 -41.5 -51.1 9.4 1.4 12.3 46 359 A P H 3> S+ 0 0 61 0, 0.0 4,-1.6 0, 0.0 -1,-0.3 0.804 105.2 65.6 -69.8 -30.5 8.0 3.0 9.1 47 360 A L H 34 S+ 0 0 36 -3,-0.5 -2,-0.2 -6,-0.2 -3,-0.1 0.718 114.7 31.7 -65.0 -20.1 6.9 -0.3 7.7 48 361 A F H XX S+ 0 0 0 -4,-1.3 3,-2.7 -3,-0.8 4,-0.6 0.752 106.1 69.5-104.8 -37.0 4.5 -0.5 10.6 49 362 A Q H >< S+ 0 0 85 -4,-2.4 3,-1.0 -5,-0.3 -2,-0.2 0.892 85.0 71.4 -48.6 -45.5 3.7 3.2 11.1 50 363 A N T 3< S+ 0 0 114 -4,-1.6 -1,-0.3 1,-0.3 -2,-0.1 0.741 92.5 62.1 -44.5 -23.8 1.8 3.1 7.8 51 364 A F T <4 S- 0 0 45 -3,-2.7 -1,-0.3 -5,-0.1 -2,-0.2 0.951 130.1 -68.3 -69.9 -51.3 -0.7 1.1 9.8 52 365 A G S << S- 0 0 38 -3,-1.0 2,-0.3 -4,-0.6 -3,-0.1 -0.073 86.1 -25.0-163.3 -88.0 -1.5 3.8 12.3 53 366 A F - 0 0 106 -5,-0.1 2,-0.5 -3,-0.0 18,-0.2 -0.994 39.5-149.5-151.7 144.5 0.8 5.2 15.0 54 367 A I + 0 0 16 -2,-0.3 16,-0.2 16,-0.1 3,-0.2 -0.933 16.7 171.4-121.1 109.7 3.9 4.0 16.9 55 368 A L S S+ 0 0 77 14,-1.7 2,-0.2 -2,-0.5 15,-0.1 0.672 80.7 2.2 -86.4 -19.4 4.4 5.3 20.4 56 369 A D E -C 69 0A 100 13,-0.7 13,-2.2 2,-0.0 2,-0.5 -0.770 64.4-163.4-171.0 120.7 7.3 2.9 21.1 57 370 A F E -C 68 0A 21 -2,-0.2 2,-0.6 11,-0.2 11,-0.2 -0.929 2.7-164.0-113.6 131.3 8.9 0.2 18.9 58 371 A K E -C 67 0A 94 9,-2.9 9,-2.6 -2,-0.5 2,-0.5 -0.885 9.1-174.3-117.3 100.7 11.1 -2.6 20.3 59 372 A H E -C 66 0A 32 -2,-0.6 7,-0.2 7,-0.3 3,-0.1 -0.824 5.7-173.3 -97.8 127.4 13.3 -4.3 17.7 60 373 A Y E >>> +C 65 0A 96 5,-2.3 4,-2.7 -2,-0.5 5,-2.0 -0.775 14.0 166.5-122.8 86.6 15.3 -7.3 18.7 61 374 A P T 345S+ 0 0 56 0, 0.0 -1,-0.1 0, 0.0 5,-0.1 0.715 74.9 68.7 -69.8 -21.4 17.6 -8.5 15.9 62 375 A E T 345S+ 0 0 185 1,-0.2 -25,-0.1 -3,-0.1 -2,-0.0 0.749 118.6 20.6 -69.5 -23.8 19.5 -10.7 18.3 63 376 A K T <45S- 0 0 97 -3,-1.0 -29,-0.2 2,-0.2 -1,-0.2 0.615 109.6-114.8-115.4 -25.8 16.4 -12.9 18.6 64 377 A G T <5S+ 0 0 8 -4,-2.7 -30,-1.3 1,-0.3 -29,-1.0 0.881 76.1 102.8 90.1 44.8 14.6 -12.0 15.4 65 378 A C E < -AC 33 60A 23 -5,-2.0 -5,-2.3 -32,-0.2 2,-0.3 -0.988 44.0-166.8-156.9 147.9 11.5 -10.3 16.8 66 379 A C E -AC 32 59A 0 -34,-1.6 -34,-2.4 -2,-0.3 2,-0.5 -0.967 9.6-149.2-138.0 153.2 10.0 -6.8 17.3 67 380 A F E -AC 31 58A 44 -9,-2.6 -9,-2.9 -2,-0.3 2,-0.5 -0.972 10.2-166.3-128.5 118.9 7.2 -5.3 19.3 68 381 A I E -AC 30 57A 0 -38,-2.1 -38,-2.6 -2,-0.5 2,-0.4 -0.897 9.8-148.6-107.7 128.7 5.3 -2.2 18.1 69 382 A K E -AC 29 56A 97 -13,-2.2 -14,-1.7 -2,-0.5 -13,-0.7 -0.808 18.0-174.6 -97.9 132.2 3.0 -0.3 20.5 70 383 A Y - 0 0 1 -42,-2.1 -16,-0.1 -2,-0.4 -42,-0.1 -0.547 37.6-107.3-114.7-178.9 -0.1 1.5 19.1 71 384 A D S S+ 0 0 112 -18,-0.2 2,-0.3 -2,-0.2 -1,-0.1 0.881 100.8 21.6 -76.8 -40.6 -2.8 3.8 20.4 72 385 A T S > S- 0 0 66 1,-0.1 4,-0.5 -44,-0.0 -2,-0.1 -0.803 74.8-120.4-125.2 167.1 -5.5 1.1 20.3 73 386 A H H >> S+ 0 0 31 -48,-0.4 4,-1.6 -2,-0.3 3,-1.4 0.887 111.2 60.3 -73.0 -40.6 -5.7 -2.6 20.2 74 387 A E H 3> S+ 0 0 118 1,-0.3 4,-1.4 2,-0.2 -1,-0.2 0.782 96.0 64.7 -57.9 -27.0 -7.6 -2.7 16.8 75 388 A Q H 3> S+ 0 0 45 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.837 104.0 44.9 -65.7 -33.5 -4.5 -0.9 15.4 76 389 A A H < S+ 0 0 2 -4,-2.7 3,-1.9 -5,-0.1 10,-0.3 0.599 85.8 123.7 -86.1 -12.9 2.2 -9.1 8.5 84 397 A A T 3< S- 0 0 31 -4,-0.8 10,-0.2 1,-0.3 -3,-0.1 -0.311 99.5 -23.5 -53.4 111.0 0.9 -12.6 8.9 85 398 A N T 3 S+ 0 0 135 8,-0.6 -1,-0.3 -2,-0.3 9,-0.1 0.906 101.6 160.3 47.7 48.9 3.3 -14.7 6.7 86 399 A F < - 0 0 37 -3,-1.9 7,-2.1 7,-0.4 -1,-0.2 -0.799 43.3-108.0-104.6 144.3 4.1 -11.6 4.7 87 400 A P E -D 92 0B 91 0, 0.0 2,-0.3 0, 0.0 5,-0.3 -0.424 35.5-178.9 -69.8 139.1 7.2 -11.1 2.5 88 401 A F E > -D 91 0B 19 3,-1.9 3,-2.8 -2,-0.1 -2,-0.0 -0.896 67.8 -30.2-145.8 111.8 9.9 -8.8 3.8 89 402 A Q T 3 S- 0 0 77 -2,-0.3 3,-0.1 1,-0.3 0, 0.0 0.819 127.6 -47.6 51.1 32.6 13.2 -8.0 1.9 90 403 A G T 3 S+ 0 0 80 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.043 130.4 88.9 98.9 -26.2 12.9 -11.5 0.5 91 404 A R E < S-D 88 0B 159 -3,-2.8 -3,-1.9 -4,-0.0 -1,-0.2 -0.862 74.1-126.5-109.4 141.3 12.2 -13.1 3.9 92 405 A N E -D 87 0B 89 -2,-0.4 2,-0.2 -5,-0.3 -8,-0.1 -0.467 22.8-150.2 -82.5 155.2 8.8 -13.6 5.4 93 406 A L - 0 0 4 -7,-2.1 -8,-0.6 -10,-0.3 -7,-0.4 -0.612 7.1-123.7-117.2 178.3 7.9 -12.4 8.9 94 407 A R - 0 0 142 -61,-2.5 2,-0.3 -2,-0.2 -10,-0.1 -0.639 15.4-150.2-117.6 176.0 5.5 -13.5 11.7 95 408 A T + 0 0 31 -63,-0.2 2,-0.3 -2,-0.2 -63,-0.2 -0.981 29.1 114.8-146.8 156.7 2.7 -11.9 13.7 96 409 A G - 0 0 18 -65,-0.4 -65,-3.0 -2,-0.3 2,-0.6 -0.975 61.6 -55.1 166.8-176.1 1.1 -12.1 17.1 97 410 A W B -B 30 0A 23 -2,-0.3 -67,-0.2 -67,-0.2 -2,-0.0 -0.815 65.6 -97.2 -95.1 119.0 0.3 -10.4 20.4 98 411 A G + 0 0 26 -69,-1.1 2,-0.3 -2,-0.6 -1,-0.1 -0.009 59.5 169.5 -34.4 111.0 3.4 -9.1 22.2 99 412 A K - 0 0 143 1,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.982 51.2-108.6-134.7 145.6 4.2 -11.8 24.7 100 413 A E 0 0 195 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.1 0.831 360.0 360.0 -34.9 -45.3 7.1 -12.5 27.0 101 414 A R 0 0 220 -3,-0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.907 360.0 360.0-172.2 360.0 8.0 -15.4 24.6