==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 03-MAR-11 2LA5 . COMPND 2 MOLECULE: RNA (36-MER); . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.PHAN,V.KURYAVYI,J.DARNELL,A.SERGANOV,A.MAJUMDAR,S.ILIN,R.D . 17 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2041.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 3 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 B G 0 0 110 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 93.9 -7.1 14.6 -10.3 2 2 B P + 0 0 126 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.623 360.0 170.4 -77.5 117.5 -4.2 15.2 -7.9 3 3 B R + 0 0 225 -2,-0.5 0, 0.0 1,-0.1 0, 0.0 0.556 69.3 69.5-100.9 -13.3 -2.6 18.6 -8.4 4 4 B R S S- 0 0 197 1,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.959 81.3-151.8 -69.5 -52.4 -0.4 18.5 -5.3 5 5 B G + 0 0 68 3,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.345 64.1 112.7 94.2 -5.0 2.0 15.8 -6.6 6 6 B D - 0 0 118 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 0.931 69.0-144.0 -64.2 -46.4 2.7 14.6 -3.1 7 7 B G - 0 0 71 2,-0.0 3,-0.1 1,-0.0 2,-0.0 0.966 13.8-150.6 77.6 80.1 1.0 11.3 -3.7 8 8 B R - 0 0 190 1,-0.1 2,-0.3 0, 0.0 3,-0.0 -0.292 31.5 -84.3 -75.1 166.0 -0.8 10.2 -0.4 9 9 B R - 0 0 155 1,-0.1 7,-0.1 -2,-0.0 -1,-0.1 -0.558 54.7-109.5 -72.1 126.5 -1.4 6.6 0.6 10 10 B R - 0 0 167 -2,-0.3 3,-0.2 1,-0.1 -1,-0.1 -0.352 28.3-148.3 -60.8 134.8 -4.5 5.5 -1.1 11 11 B G S S+ 0 0 48 1,-0.1 2,-2.5 5,-0.1 -1,-0.1 0.676 71.3 80.8 -69.7-122.4 -7.4 5.0 1.3 12 12 B G S S- 0 0 91 2,-0.1 2,-0.2 4,-0.0 -1,-0.1 -0.258 107.7 -14.4 54.8 -76.9 -9.9 2.3 0.3 13 13 B G S S- 0 0 31 -2,-2.5 4,-0.1 2,-0.4 0, 0.0 -0.814 91.8 -64.1-142.9-175.7 -7.8 -0.5 1.7 14 14 B G S > S+ 0 0 59 -2,-0.2 3,-1.8 2,-0.1 -2,-0.1 0.836 98.3 104.6 -38.0 -47.2 -4.3 -1.5 2.9 15 15 B R T 3 S+ 0 0 177 1,-0.3 -2,-0.4 -6,-0.1 0, 0.0 -0.169 70.8 46.2 -46.9 123.2 -3.1 -0.8 -0.6 16 16 B G T 3 0 0 12 1,-0.4 -1,-0.3 -7,-0.1 -2,-0.1 0.082 360.0 360.0 125.0 -16.9 -1.2 2.5 -0.4 17 17 B Q < 0 0 196 -3,-1.8 -1,-0.4 -8,-0.1 -7,-0.1 -0.127 360.0 360.0 -58.3 360.0 0.8 1.7 2.7