==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 01-APR-02 1LB0 . COMPND 2 MOLECULE: GP41; . SOURCE 2 SYNTHETIC: YES; . AUTHOR Z.BIRON . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1960.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 8 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 196 0, 0.0 5,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 106.8 14.2 4.7 3.2 2 2 A L + 0 0 174 4,-0.0 2,-0.5 2,-0.0 0, 0.0 -0.069 360.0 134.1-102.6 31.5 12.2 1.8 1.8 3 3 A L > - 0 0 99 1,-0.2 3,-0.7 2,-0.1 4,-0.0 -0.721 39.3-167.8 -87.0 125.7 15.0 0.6 -0.5 4 4 A E G > S+ 0 0 183 -2,-0.5 3,-0.6 1,-0.2 -1,-0.2 0.786 89.2 56.2 -80.2 -29.5 15.8 -3.1 -0.5 5 5 A L G > S+ 0 0 138 1,-0.2 3,-1.1 2,-0.1 -1,-0.2 0.181 75.7 102.3 -87.6 17.4 19.0 -2.6 -2.4 6 6 A D G X + 0 0 86 -3,-0.7 3,-1.6 1,-0.2 -1,-0.2 0.515 55.4 87.8 -77.4 -4.2 20.3 -0.2 0.2 7 7 A K G X S+ 0 0 181 -3,-0.6 3,-0.9 1,-0.3 -1,-0.2 0.620 72.4 73.1 -69.1 -11.6 22.5 -3.0 1.6 8 8 A W G X + 0 0 203 -3,-1.1 3,-1.9 1,-0.2 -1,-0.3 0.471 68.3 93.1 -80.8 -1.9 25.1 -1.9 -0.8 9 9 A A G X S+ 0 0 69 -3,-1.6 3,-1.6 1,-0.3 -1,-0.2 0.797 75.5 64.2 -60.9 -28.6 25.8 1.2 1.3 10 10 A S G X S+ 0 0 96 -3,-0.9 3,-0.7 1,-0.3 -1,-0.3 0.611 90.4 67.3 -71.0 -11.3 28.5 -0.8 3.1 11 11 A L G < S+ 0 0 107 -3,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.450 102.7 45.4 -87.2 -1.3 30.4 -0.9 -0.3 12 12 A W G < 0 0 228 -3,-1.6 -1,-0.2 -4,-0.1 -2,-0.2 -0.062 360.0 360.0-130.4 31.5 30.9 2.9 -0.1 13 13 A N < 0 0 200 -3,-0.7 -3,-0.2 0, 0.0 -2,-0.1 0.048 360.0 360.0-174.5 360.0 32.0 3.3 3.5