==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 04-APR-02 1LC2 . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; . AUTHOR S.G.SIVAKOLUNDU,P.A.MABROUK . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6275.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 28.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 41 0, 0.0 2,-0.2 0, 0.0 89,-0.0 0.000 360.0 360.0 360.0 -86.1 2.0 1.4 1.4 2 2 A D > - 0 0 93 1,-0.1 4,-0.7 93,-0.0 95,-0.3 -0.693 360.0-119.0-133.8 161.4 -1.1 1.2 3.5 3 3 A V H >> S+ 0 0 41 93,-0.2 4,-3.3 -2,-0.2 3,-0.7 0.907 115.0 47.3 -68.3 -41.5 -4.3 -0.6 4.6 4 4 A E H 3> S+ 0 0 123 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.939 109.9 54.1 -60.8 -49.3 -6.7 2.2 3.6 5 5 A K H 34 S+ 0 0 105 1,-0.2 -1,-0.2 2,-0.2 -2,-0.2 0.623 117.7 37.5 -62.7 -14.8 -4.9 2.5 0.2 6 6 A G H XX S+ 0 0 0 -3,-0.7 4,-3.0 -4,-0.7 3,-1.2 0.821 111.6 52.7-104.8 -45.3 -5.5 -1.3 -0.3 7 7 A K H 3X S+ 0 0 78 -4,-3.3 4,-3.0 1,-0.2 5,-0.2 0.888 105.1 59.7 -59.1 -34.7 -9.0 -1.9 1.1 8 8 A K H 3< S+ 0 0 89 -4,-2.1 -1,-0.2 -5,-0.2 -3,-0.1 0.746 114.5 34.8 -62.2 -28.7 -10.3 1.0 -1.1 9 9 A I H <> S+ 0 0 4 -3,-1.2 4,-2.5 -5,-0.2 3,-0.4 0.780 116.3 54.8 -98.4 -32.7 -9.1 -0.9 -4.3 10 10 A F H X>S+ 0 0 4 -4,-3.0 5,-2.8 1,-0.2 4,-2.7 0.968 107.5 49.7 -57.8 -54.3 -9.9 -4.4 -2.9 11 11 A V H <5S+ 0 0 65 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.1 0.663 116.1 46.2 -66.0 -11.6 -13.5 -3.5 -2.1 12 12 A Q H 45S+ 0 0 125 -3,-0.4 -1,-0.2 -5,-0.2 -2,-0.2 0.907 132.4 7.0 -90.3 -56.0 -13.8 -2.1 -5.7 13 13 A K H <5S+ 0 0 102 -4,-2.5 -3,-0.2 2,-0.1 -2,-0.2 0.325 133.3 41.6-125.6 7.8 -12.2 -4.8 -8.0 14 14 A C T >X5S+ 0 0 12 -4,-2.7 4,-3.2 -5,-0.4 3,-2.6 0.692 108.4 55.1-110.8 -49.0 -11.5 -7.8 -5.8 15 15 A A T 34 + 0 0 42 -2,-0.3 3,-2.1 4,-0.3 4,-0.2 0.369 62.0 49.6-143.4 -66.4 -14.4 -11.0 2.2 21 21 A E T 3 S+ 0 0 88 1,-0.3 3,-0.1 2,-0.1 -2,-0.1 0.791 119.0 43.5 -57.5 -31.3 -14.1 -7.7 4.2 22 22 A K T 3 S- 0 0 160 1,-0.3 -1,-0.3 3,-0.0 2,-0.1 0.479 142.2 -56.6 -86.2 -6.2 -17.9 -7.0 3.5 23 23 A G S < S- 0 0 39 -3,-2.1 -1,-0.3 2,-0.0 -2,-0.1 -0.060 73.8 -71.7 120.3 126.5 -18.8 -10.6 4.4 24 24 A G + 0 0 46 -4,-0.2 -4,-0.3 -3,-0.1 2,-0.1 -0.171 57.4 152.8 -46.2 127.5 -17.5 -13.9 2.7 25 25 A K B -A 19 0A 124 -6,-2.7 2,-2.2 4,-0.1 -6,-2.0 -0.605 27.8-166.8-162.4 97.8 -18.7 -14.7 -0.9 26 26 A H + 0 0 57 -8,-0.2 -8,-0.2 1,-0.2 -2,-0.1 -0.403 38.1 147.8 -72.3 57.4 -16.5 -16.8 -3.2 27 27 A K S S- 0 0 109 -2,-2.2 -1,-0.2 -10,-0.3 -9,-0.2 0.655 81.1 -7.5 -83.1 -17.6 -18.8 -15.6 -6.1 28 28 A T S S+ 0 0 92 -11,-2.4 -10,-0.2 1,-0.7 52,-0.1 0.370 140.5 24.2-154.3 -10.4 -16.2 -15.6 -9.0 29 29 A G S S- 0 0 8 -12,-2.4 -1,-0.7 -4,-0.2 2,-0.2 -0.936 100.6 -80.3-137.7 167.4 -12.9 -16.3 -7.1 30 30 A P - 0 0 35 0, 0.0 2,-0.2 0, 0.0 -12,-0.1 -0.468 52.2-110.5 -68.0 127.9 -12.3 -18.0 -3.7 31 31 A N - 0 0 24 -2,-0.2 2,-1.9 1,-0.1 -5,-0.1 -0.426 37.8-106.1 -64.0 127.6 -12.9 -15.6 -0.8 32 32 A L - 0 0 23 -14,-0.2 2,-2.2 -2,-0.2 -1,-0.1 -0.361 33.5-171.6 -68.7 81.5 -9.6 -14.8 0.9 33 33 A H S S- 0 0 54 -2,-1.9 2,-2.5 1,-0.1 -1,-0.1 -0.531 72.5 -69.3 -62.7 73.1 -9.7 -16.8 4.2 34 34 A G - 0 0 15 -2,-2.2 2,-2.1 67,-0.2 -1,-0.1 -0.347 68.8-176.2 67.8 -63.1 -6.4 -15.0 5.2 35 35 A L > + 0 0 21 -2,-2.5 3,-2.3 1,-0.1 2,-0.3 -0.294 43.0 112.6 68.3 -48.6 -4.2 -16.8 2.6 36 36 A F T 3 S- 0 0 13 -2,-2.1 24,-0.3 1,-0.3 -1,-0.1 -0.359 99.9 -3.8 -63.7 113.4 -0.8 -15.2 3.8 37 37 A G T 3 S+ 0 0 64 22,-3.0 -1,-0.3 -2,-0.3 23,-0.1 0.404 123.0 91.1 79.5 0.0 1.2 -18.1 5.2 38 38 A R S < S- 0 0 125 -3,-2.3 2,-0.2 21,-0.3 -1,-0.1 0.481 79.2 -95.7 -86.9-127.9 -1.8 -20.5 4.7 39 39 A K - 0 0 102 19,-0.1 3,-0.2 1,-0.1 -1,-0.1 -0.893 11.4-121.8-154.3 173.4 -2.3 -22.6 1.5 40 40 A T S > S+ 0 0 21 -2,-0.2 2,-2.6 13,-0.2 3,-0.7 0.885 97.4 66.2 -95.8 -48.2 -4.2 -22.6 -1.9 41 41 A G T 3 S+ 0 0 34 12,-0.4 -1,-0.2 1,-0.2 11,-0.0 -0.382 78.6 101.6 -76.0 61.7 -6.4 -25.8 -1.9 42 42 A Q T 3 + 0 0 58 -2,-2.6 -1,-0.2 -3,-0.2 -2,-0.1 0.510 43.1 114.0-130.2 -19.0 -8.4 -24.2 1.0 43 43 A A < - 0 0 23 -3,-0.7 3,-0.2 1,-0.1 -11,-0.0 -0.207 56.9-130.2 -63.3 151.7 -11.7 -22.8 -0.5 44 44 A P S S- 0 0 71 0, 0.0 2,-1.1 0, 0.0 -1,-0.1 0.121 71.9 -17.3 -76.0-160.2 -15.2 -24.2 0.3 45 45 A G S S+ 0 0 73 2,-0.0 2,-0.2 0, 0.0 -19,-0.1 -0.288 98.6 110.6 -52.2 87.0 -17.8 -25.2 -2.4 46 46 A F - 0 0 58 -2,-1.1 2,-0.3 -3,-0.2 -19,-0.1 -0.773 51.8-139.5-144.1-179.4 -16.5 -23.4 -5.5 47 47 A T + 0 0 121 -2,-0.2 -2,-0.0 1,-0.0 0, 0.0 -0.965 36.7 131.0-156.9 142.9 -14.9 -24.4 -8.9 48 48 A Y - 0 0 84 1,-0.3 2,-0.2 -2,-0.3 3,-0.1 0.280 64.0 -39.0-153.5 -85.7 -12.1 -22.9 -11.0 49 49 A T - 0 0 47 1,-0.1 -1,-0.3 29,-0.0 4,-0.2 -0.862 39.3-119.9-144.9 173.8 -9.2 -25.1 -12.4 50 50 A D S > S+ 0 0 79 -2,-0.2 4,-2.0 2,-0.1 5,-0.3 0.781 101.0 74.1 -76.1 -37.3 -7.0 -28.0 -11.3 51 51 A A H > S+ 0 0 9 25,-0.2 4,-2.6 1,-0.2 5,-0.5 0.840 90.4 46.0 -51.1 -61.8 -3.9 -25.9 -11.7 52 52 A N H > S+ 0 0 19 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.915 119.1 36.6 -51.7 -61.8 -3.9 -23.5 -8.7 53 53 A K H 4 S+ 0 0 59 -4,-0.2 -12,-0.4 1,-0.2 -13,-0.2 0.904 121.5 42.7 -58.6 -56.1 -4.8 -26.0 -5.8 54 54 A N H < S+ 0 0 102 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.876 121.7 37.4 -66.7 -44.2 -2.8 -29.0 -7.0 55 55 A K H < S+ 0 0 111 -4,-2.6 -2,-0.2 -5,-0.3 -3,-0.2 0.930 89.8 170.4 -75.6 -45.3 0.4 -27.2 -8.1 56 56 A G < - 0 0 23 -4,-2.3 -3,-0.1 -5,-0.5 -2,-0.1 0.162 32.6-162.3 55.4-179.2 0.6 -24.6 -5.3 57 57 A I - 0 0 61 18,-0.0 6,-0.1 2,-0.0 -1,-0.1 0.248 51.4 -97.0-171.7 -6.2 3.3 -22.1 -4.3 58 58 A T - 0 0 81 5,-0.1 2,-0.4 1,-0.1 5,-0.3 0.802 40.9-109.7 55.8 116.0 2.4 -21.0 -0.6 59 59 A W + 0 0 14 -24,-0.3 -22,-3.0 4,-0.1 -21,-0.3 -0.600 62.7 129.0 -73.1 126.3 0.5 -17.7 -0.6 60 60 A K S > S- 0 0 73 -2,-0.4 4,-2.6 -24,-0.3 5,-0.5 -0.920 73.8 -69.5-165.3 176.0 2.6 -14.9 0.9 61 61 A E T 4 S+ 0 0 84 -2,-0.2 4,-0.4 1,-0.2 5,-0.1 0.754 130.3 41.0 -57.3 -30.1 3.9 -11.3 0.2 62 62 A E T >> S+ 0 0 120 3,-0.1 4,-2.8 2,-0.1 3,-0.8 0.972 118.4 40.4 -72.0 -71.6 6.1 -12.5 -2.6 63 63 A T H 3> S+ 0 0 8 -5,-0.3 4,-2.6 1,-0.3 -2,-0.2 0.784 116.6 47.9 -59.6 -38.1 3.9 -15.1 -4.4 64 64 A L H 3X S+ 0 0 8 -4,-2.6 4,-2.9 2,-0.2 -1,-0.3 0.794 114.2 47.0 -75.3 -29.4 0.6 -13.2 -4.3 65 65 A M H <> S+ 0 0 73 -3,-0.8 4,-2.3 -5,-0.5 -2,-0.2 0.947 114.9 46.5 -69.6 -48.7 2.3 -10.0 -5.5 66 66 A E H X S+ 0 0 110 -4,-2.8 4,-0.9 2,-0.2 -2,-0.2 0.905 117.0 46.3 -57.3 -45.0 4.0 -12.1 -8.3 67 67 A Y H >< S+ 0 0 30 -4,-2.6 3,-1.2 -5,-0.2 7,-0.2 0.963 110.7 48.9 -61.5 -60.0 0.6 -13.7 -8.9 68 68 A L H 3< S+ 0 0 14 -4,-2.9 -2,-0.2 1,-0.3 -1,-0.2 0.823 106.4 58.4 -56.6 -32.2 -1.5 -10.4 -8.9 69 69 A E H 3< S- 0 0 91 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.758 137.4 -7.0 -70.2 -24.6 1.0 -8.8 -11.4 70 70 A N S+ 0 0 0 0, 0.0 4,-2.0 0, 0.0 7,-0.3 0.889 79.7 55.4 -74.0 -38.0 -2.0 -14.5 -12.5 72 72 A K H 4>S+ 0 0 105 1,-0.2 5,-0.9 8,-0.2 6,-0.3 0.851 116.7 37.4 -59.1 -43.1 -2.4 -16.3 -15.9 73 73 A K H 45S+ 0 0 171 -6,-0.1 -1,-0.2 3,-0.1 -6,-0.1 0.862 112.8 57.9 -75.0 -41.1 1.4 -16.6 -16.4 74 74 A Y H <5S+ 0 0 63 -4,-2.4 -2,-0.2 -7,-0.2 -1,-0.1 0.854 117.1 25.8 -69.0 -36.7 2.2 -17.3 -12.7 75 75 A I T ><5S- 0 0 7 -4,-2.0 3,-2.1 3,-0.1 2,-0.9 -0.997 100.7-103.6-131.2 127.8 0.1 -20.4 -12.3 76 76 A P T 3 5S- 0 0 93 0, 0.0 -25,-0.2 0, 0.0 -3,-0.1 -0.273 98.7 -5.0 -72.2 93.8 -0.6 -22.5 -15.4 77 77 A G T 3 - 0 0 42 1,-0.2 2,-2.2 -52,-0.1 3,-0.9 0.826 39.3-137.8 25.3 84.2 -8.7 -14.6 -13.1 81 81 A I T 3 S+ 0 0 153 1,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.418 88.2 54.5 -73.6 77.3 -10.2 -12.0 -15.4 82 82 A F T 3 + 0 0 65 -2,-2.2 2,-0.6 -3,-0.3 -1,-0.2 0.114 62.8 177.4-163.3 -45.4 -8.4 -8.8 -14.2 83 83 A A < + 0 0 33 -3,-0.9 2,-0.3 -4,-0.1 -2,-0.1 0.238 62.4 37.2 46.6 1.0 -4.6 -9.7 -14.4 84 84 A G - 0 0 26 -2,-0.6 -15,-0.1 -14,-0.1 2,-0.1 -0.960 66.1-137.7-165.7 170.7 -3.2 -6.2 -13.3 85 85 A I - 0 0 9 -2,-0.3 2,-2.8 -16,-0.1 5,-0.3 -0.478 46.2 -97.6-143.2 63.1 -4.1 -3.4 -10.9 86 86 A K S S- 0 0 161 -2,-0.1 2,-0.3 4,-0.1 0, 0.0 -0.233 95.9 -3.5 62.3 -56.9 -3.7 0.2 -12.3 87 87 A K S >> S- 0 0 107 -2,-2.8 4,-1.0 0, 0.0 3,-0.5 -0.967 78.9 -95.4-163.5 156.2 -0.2 1.0 -10.9 88 88 A K H 3> S+ 0 0 128 -2,-0.3 4,-1.2 1,-0.2 5,-0.1 0.502 115.4 66.6 -64.7 -7.7 2.5 -0.7 -8.6 89 89 A T H 3> S+ 0 0 55 2,-0.2 4,-2.9 3,-0.1 -1,-0.2 0.952 96.9 50.2 -73.8 -54.1 1.1 1.2 -5.5 90 90 A E H <> S+ 0 0 3 -3,-0.5 4,-2.5 -5,-0.3 -2,-0.2 0.813 108.4 58.7 -54.3 -35.3 -2.3 -0.5 -5.4 91 91 A R H X S+ 0 0 4 -4,-1.0 4,-1.7 -6,-0.2 -1,-0.2 0.968 112.3 34.1 -56.8 -65.2 -0.3 -3.8 -5.6 92 92 A E H X S+ 0 0 74 -4,-1.2 4,-2.7 2,-0.2 -2,-0.2 0.835 115.3 59.5 -66.2 -31.6 1.8 -3.3 -2.4 93 93 A D H X S+ 0 0 2 -4,-2.9 4,-2.1 2,-0.2 -87,-0.4 0.941 105.8 48.9 -57.5 -47.4 -1.1 -1.5 -0.8 94 94 A L H X S+ 0 0 4 -4,-2.5 4,-2.9 -5,-0.2 5,-0.2 0.892 111.2 49.1 -57.8 -46.4 -3.2 -4.7 -1.2 95 95 A I H X S+ 0 0 4 -4,-1.7 4,-2.6 2,-0.2 -2,-0.2 0.963 113.8 45.6 -56.5 -52.5 -0.4 -6.9 0.3 96 96 A A H < S+ 0 0 19 -4,-2.7 -93,-0.2 2,-0.2 -2,-0.2 0.715 115.0 48.9 -73.0 -22.8 -0.1 -4.5 3.3 97 97 A Y H >X S+ 0 0 12 -4,-2.1 3,-2.3 -95,-0.3 4,-1.1 0.963 113.8 43.8 -65.4 -64.9 -3.9 -4.4 3.7 98 98 A L H 3< S+ 0 0 5 -4,-2.9 4,-0.3 1,-0.3 -2,-0.2 0.812 101.0 69.7 -60.2 -30.3 -4.4 -8.3 3.5 99 99 A K T 3< S+ 0 0 73 -4,-2.6 -1,-0.3 -5,-0.2 3,-0.2 0.736 101.7 47.4 -59.3 -21.9 -1.4 -8.8 5.8 100 100 A K T X> S+ 0 0 74 -3,-2.3 4,-3.2 -4,-0.2 3,-2.7 0.926 101.6 63.0 -79.3 -45.2 -3.6 -7.3 8.6 101 101 A A T 3< S+ 0 0 50 -4,-1.1 -67,-0.2 1,-0.3 -2,-0.2 0.390 99.7 57.6 -61.2 1.3 -6.6 -9.6 7.6 102 102 A T T 34 S+ 0 0 48 -4,-0.3 -1,-0.3 -3,-0.2 -2,-0.1 0.156 125.0 16.2-110.4 11.8 -4.3 -12.5 8.6 103 103 A N T <4 0 0 123 -3,-2.7 -2,-0.2 1,-0.7 -3,-0.1 0.379 360.0 360.0-153.6 -34.6 -3.8 -11.3 12.2 104 104 A E < 0 0 197 -4,-3.2 -1,-0.7 -5,-0.1 0, 0.0 -0.803 360.0 360.0 -76.2 360.0 -6.5 -8.8 12.8