==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION/DNA 25-MAR-93 1LCC . COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*G)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR V.P.CHUPRINA,J.A.C.RULLMANN,R.M.J.N.LAMERICHS,J.H.VAN BOOM, . 51 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3988.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 43.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 216 0, 0.0 47,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 158.1 28.9 27.5 7.7 2 2 A K - 0 0 154 1,-0.1 2,-2.3 45,-0.0 49,-0.1 -0.487 360.0-121.7 -60.1 121.2 30.7 28.1 11.1 3 3 A P - 0 0 65 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.433 38.3-176.6 -71.2 73.1 29.1 25.7 13.6 4 4 A V - 0 0 7 -2,-2.3 44,-1.2 42,-0.4 47,-0.3 -0.677 13.0-157.9 -73.5 121.3 27.9 28.4 16.1 5 5 A T > - 0 0 41 -2,-0.4 4,-1.9 46,-0.2 5,-0.2 -0.551 34.6 -99.0 -98.0 169.2 26.4 26.7 19.1 6 6 A L H > S+ 0 0 31 -2,-0.2 4,-1.9 1,-0.2 5,-0.1 0.839 124.3 55.4 -45.2 -39.3 24.0 27.4 21.9 7 7 A Y H > S+ 0 0 122 2,-0.2 4,-3.2 3,-0.2 5,-0.4 0.920 102.7 52.4 -65.8 -54.5 27.2 27.9 24.0 8 8 A D H > S+ 0 0 65 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.958 113.7 43.7 -48.2 -48.5 28.7 30.6 21.8 9 9 A V H X S+ 0 0 0 -4,-1.9 4,-1.8 1,-0.2 -2,-0.2 0.896 115.4 50.4 -69.6 -29.4 25.5 32.7 21.8 10 10 A A H X>S+ 0 0 1 -4,-1.9 5,-2.6 2,-0.2 4,-1.1 0.916 113.0 42.8 -71.7 -56.3 25.2 32.1 25.6 11 11 A E H <5S+ 0 0 152 -4,-3.2 3,-0.5 3,-0.2 -1,-0.2 0.913 113.1 55.7 -53.5 -43.2 28.8 33.2 26.5 12 12 A Y H <5S+ 0 0 153 -4,-2.7 -2,-0.2 -5,-0.4 -1,-0.2 0.870 114.7 38.5 -60.4 -35.2 28.3 36.1 24.0 13 13 A A H <5S- 0 0 15 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.569 117.3-111.9 -81.3 -23.6 25.2 37.2 25.9 14 14 A G T <5S+ 0 0 63 -4,-1.1 2,-0.3 -3,-0.5 -3,-0.2 0.936 78.9 106.9 80.6 48.6 26.6 36.4 29.4 15 15 A V S - 0 0 59 -2,-0.3 4,-2.4 1,-0.1 5,-0.2 -0.625 32.5-120.5 -76.0 152.4 24.1 29.7 30.5 17 17 A Y H > S+ 0 0 90 -2,-0.3 4,-2.6 2,-0.2 -1,-0.1 0.854 117.4 49.9 -54.0 -33.4 23.6 27.3 27.6 18 18 A Q H > S+ 0 0 57 2,-0.2 4,-3.0 1,-0.2 -1,-0.2 0.908 107.6 51.4 -82.0 -37.6 20.5 26.0 29.4 19 19 A T H 4 S+ 0 0 48 2,-0.2 -1,-0.2 1,-0.2 -2,-0.2 0.908 114.9 44.6 -57.9 -44.7 19.1 29.5 29.9 20 20 A V H >X S+ 0 0 0 -4,-2.4 4,-1.2 2,-0.2 3,-1.1 0.839 109.7 53.1 -76.9 -35.0 19.7 30.1 26.1 21 21 A S H >X S+ 0 0 27 -4,-2.6 4,-3.3 -5,-0.2 3,-1.3 0.977 106.1 56.8 -58.9 -44.7 18.1 26.7 25.2 22 22 A R H 3< S+ 0 0 76 -4,-3.0 -1,-0.2 1,-0.3 -2,-0.2 0.263 101.7 55.0 -72.8 12.6 15.2 28.0 27.4 23 23 A V H <4 S+ 0 0 53 -3,-1.1 -1,-0.3 2,-0.1 -2,-0.2 0.641 120.0 31.7-106.7 -20.3 15.0 31.0 25.1 24 24 A V H << S- 0 0 70 -3,-1.3 2,-0.3 -4,-1.2 -2,-0.2 0.929 134.4 -10.4 -96.3 -59.7 14.7 28.6 22.1 25 25 A N S < S+ 0 0 115 -4,-3.3 -1,-0.3 -5,-0.1 3,-0.2 -0.977 118.5 34.2-143.2 162.5 12.8 25.6 23.6 26 26 A Q S S- 0 0 134 -2,-0.3 -4,-0.2 1,-0.2 -1,-0.1 0.629 82.3-161.2 61.0 32.5 11.6 24.2 27.0 27 27 A A + 0 0 76 -6,-0.2 2,-0.3 -4,-0.1 -1,-0.2 -0.102 30.7 134.0 -65.0 105.2 11.2 27.8 28.1 28 28 A S + 0 0 55 -3,-0.2 -6,-0.1 -6,-0.2 -3,-0.1 -0.913 57.7 20.5-139.0 151.4 11.0 28.6 31.8 29 29 A H + 0 0 183 -2,-0.3 2,-0.4 1,-0.2 -1,-0.1 0.941 67.4 157.5 61.5 68.8 12.7 31.3 33.9 30 30 A V - 0 0 47 -3,-0.1 -1,-0.2 4,-0.0 2,-0.2 -0.964 23.4-151.1-123.7 134.6 13.7 34.2 31.6 31 31 A S > - 0 0 72 -2,-0.4 4,-2.6 1,-0.1 5,-0.3 -0.548 26.3-105.3-106.2 160.7 14.3 37.8 32.7 32 32 A A H > S+ 0 0 70 1,-0.2 4,-1.8 -2,-0.2 -1,-0.1 0.924 117.8 30.1 -42.1 -64.9 14.1 41.3 31.2 33 33 A K H > S+ 0 0 161 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.821 119.0 55.1 -72.0 -31.0 17.9 42.0 30.8 34 34 A T H > S+ 0 0 42 2,-0.2 4,-2.2 1,-0.2 3,-0.3 0.961 107.6 49.5 -74.6 -43.0 18.9 38.3 30.2 35 35 A R H X S+ 0 0 100 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.953 108.0 53.8 -56.3 -49.7 16.4 37.9 27.4 36 36 A E H X S+ 0 0 129 -4,-1.8 4,-1.9 -5,-0.3 -1,-0.2 0.794 107.6 52.2 -63.9 -27.5 17.7 41.1 25.7 37 37 A K H X S+ 0 0 109 -4,-1.6 4,-2.5 -3,-0.3 -1,-0.2 0.965 107.3 50.2 -65.4 -53.9 21.2 39.7 25.9 38 38 A V H X S+ 0 0 1 -4,-2.2 4,-3.1 2,-0.2 -2,-0.2 0.876 110.1 52.5 -53.3 -35.9 20.2 36.4 24.2 39 39 A E H X S+ 0 0 108 -4,-2.2 4,-1.7 1,-0.2 5,-0.3 0.972 110.6 44.7 -69.7 -50.0 18.5 38.5 21.4 40 40 A A H X S+ 0 0 50 -4,-1.9 4,-1.6 2,-0.2 5,-0.2 0.830 114.6 51.9 -62.1 -27.3 21.6 40.6 20.6 41 41 A A H X S+ 0 0 0 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.995 112.1 44.6 -75.0 -47.1 23.7 37.4 20.8 42 42 A M H <>S+ 0 0 47 -4,-3.1 5,-0.5 1,-0.2 -1,-0.2 0.618 118.1 42.3 -60.8 -36.6 21.4 35.5 18.3 43 43 A A H <5S+ 0 0 90 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.793 115.7 44.9 -89.9 -33.3 21.1 38.4 15.8 44 44 A E H <5S+ 0 0 142 -4,-1.6 2,-0.4 -5,-0.3 -2,-0.2 0.756 116.1 53.6 -72.4 -40.1 24.7 39.7 15.7 45 45 A L T <5S- 0 0 42 -4,-1.9 2,-1.8 -5,-0.2 -1,-0.0 -0.886 89.0-122.8 -96.1 146.6 26.0 36.0 15.4 46 46 A N T 5 - 0 0 108 -2,-0.4 -42,-0.4 2,-0.0 -3,-0.1 -0.447 37.3-168.8 -88.1 69.7 24.8 33.5 12.8 47 47 A Y < - 0 0 49 -2,-1.8 -42,-0.1 -5,-0.5 -41,-0.1 -0.271 7.1-151.2 -62.5 138.7 23.6 30.9 15.2 48 48 A I > - 0 0 46 -44,-1.2 3,-1.5 -46,-0.1 2,-0.1 -0.980 17.8-121.3-116.5 119.6 22.7 27.5 13.5 49 49 A P T 3 S+ 0 0 92 0, 0.0 -45,-0.0 0, 0.0 -44,-0.0 -0.428 98.5 9.1 -56.3 124.5 20.1 25.3 15.1 50 50 A N T 3 0 0 161 1,-0.1 -45,-0.1 -2,-0.1 0, 0.0 0.422 360.0 360.0 79.5 5.9 21.7 21.9 15.9 51 51 A R < 0 0 158 -3,-1.5 -46,-0.2 -47,-0.3 -1,-0.1 0.479 360.0 360.0-128.7 360.0 25.4 23.0 15.3