==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION/DNA 25-MAR-93 1LCD . COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*G)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR V.P.CHUPRINA,J.A.C.RULLMANN,R.M.J.N.LAMERICHS,J.H.VAN BOOM, . 51 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3916.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 64.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 41.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 211 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 149.6 27.9 28.7 7.0 2 2 A K - 0 0 145 1,-0.2 2,-1.8 2,-0.0 46,-0.1 -0.114 360.0-127.8 -39.2 109.8 29.3 29.3 10.5 3 3 A P - 0 0 73 0, 0.0 2,-1.0 0, 0.0 -1,-0.2 -0.574 28.4-166.0 -81.0 85.6 27.6 26.5 12.6 4 4 A V - 0 0 5 -2,-1.8 44,-1.6 42,-0.4 47,-0.3 -0.668 6.8-168.1 -79.3 104.6 26.2 28.7 15.3 5 5 A T > - 0 0 44 -2,-1.0 4,-1.4 46,-0.4 3,-0.3 -0.288 40.0 -99.3 -77.6 167.7 25.2 26.4 18.2 6 6 A L H > S+ 0 0 31 2,-0.2 4,-3.0 1,-0.2 3,-0.3 0.911 124.0 62.9 -49.2 -42.4 23.1 27.4 21.2 7 7 A Y H > S+ 0 0 126 1,-0.2 4,-3.2 2,-0.2 -1,-0.2 0.900 102.1 50.9 -54.8 -38.0 26.4 27.7 23.2 8 8 A D H > S+ 0 0 45 -3,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.786 112.7 41.5 -66.9 -52.4 27.4 30.5 20.8 9 9 A V H X S+ 0 0 0 -4,-1.4 4,-2.7 -3,-0.3 5,-0.2 0.966 116.1 52.6 -62.6 -40.8 24.3 32.6 21.1 10 10 A A H X>S+ 0 0 1 -4,-3.0 4,-2.8 2,-0.2 5,-2.2 0.906 109.1 47.7 -60.7 -51.7 24.3 31.9 24.9 11 11 A E H <5S+ 0 0 143 -4,-3.2 -1,-0.2 1,-0.2 -2,-0.2 0.922 117.0 43.3 -52.8 -48.6 27.9 33.0 25.3 12 12 A Y H <5S+ 0 0 137 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.774 115.9 48.2 -66.5 -39.7 27.3 36.3 23.4 13 13 A A H <5S- 0 0 8 -4,-2.7 -2,-0.2 2,-0.1 -1,-0.2 0.950 115.4-106.1 -73.9 -41.9 23.9 37.0 25.0 14 14 A G T <5S+ 0 0 60 -4,-2.8 2,-0.3 1,-0.3 -3,-0.2 0.479 82.1 101.3 114.4 30.7 25.0 36.5 28.7 15 15 A V S > - 0 0 66 -2,-0.3 4,-2.0 1,-0.1 3,-1.3 -0.577 37.2-113.6 -83.1 147.3 24.0 29.4 29.7 17 17 A Y H 3> S+ 0 0 99 1,-0.3 4,-1.9 -2,-0.2 -1,-0.1 0.772 117.4 60.1 -53.0 -29.3 23.3 27.1 26.7 18 18 A Q H 3> S+ 0 0 73 2,-0.2 4,-2.6 3,-0.2 -1,-0.3 0.829 105.4 45.7 -57.4 -50.4 20.5 25.5 28.9 19 19 A T H <4 S+ 0 0 25 -3,-1.3 -2,-0.2 2,-0.2 9,-0.2 0.928 112.3 49.6 -66.3 -47.6 18.6 28.8 29.2 20 20 A V H >X S+ 0 0 0 -4,-2.0 4,-1.0 1,-0.2 3,-0.9 0.875 111.5 51.9 -63.7 -32.3 18.9 29.6 25.4 21 21 A S H >X S+ 0 0 31 -4,-1.9 4,-3.0 -5,-0.3 3,-1.2 0.972 106.6 52.3 -60.7 -53.2 17.6 26.0 25.0 22 22 A R H 3< S+ 0 0 69 -4,-2.6 6,-1.1 1,-0.3 -1,-0.2 0.058 99.8 63.7 -75.4 13.7 14.7 26.8 27.3 23 23 A V H <4 S+ 0 0 51 -3,-0.9 -1,-0.3 4,-0.2 -2,-0.2 0.623 120.4 23.2 -84.6 -39.1 13.9 29.8 25.1 24 24 A V H << S+ 0 0 78 -3,-1.2 2,-0.3 -4,-1.0 -2,-0.2 0.955 136.1 13.4 -89.9 -63.1 13.2 27.3 22.3 25 25 A N S < S+ 0 0 118 -4,-3.0 -1,-0.3 1,-0.2 3,-0.2 -0.934 126.6 17.5-134.3 144.2 12.3 24.0 24.1 26 26 A Q S S- 0 0 131 -2,-0.3 -4,-0.2 1,-0.2 -1,-0.2 0.667 89.5-156.0 60.7 37.8 11.4 23.1 27.7 27 27 A A + 0 0 72 -3,-0.2 2,-0.2 -6,-0.2 -1,-0.2 0.003 39.9 113.2 -57.9 112.7 10.8 26.9 27.9 28 28 A S + 0 0 48 -6,-1.1 -6,-0.1 -9,-0.2 3,-0.1 -0.866 55.8 31.1-175.3 144.4 11.1 28.1 31.5 29 29 A H + 0 0 166 -2,-0.2 2,-0.3 1,-0.2 -7,-0.1 0.957 65.1 132.7 59.8 59.0 13.5 30.3 33.5 30 30 A V - 0 0 18 -7,-0.1 -1,-0.2 -8,-0.0 -15,-0.0 -0.849 45.4-151.9-136.3 100.4 14.7 32.9 31.0 31 31 A S > - 0 0 82 -2,-0.3 4,-3.4 4,-0.1 5,-0.4 0.022 25.2 -82.0 -87.6 174.0 14.3 36.2 32.8 32 32 A A H > S+ 0 0 64 1,-0.2 4,-2.3 2,-0.2 5,-0.1 0.820 120.3 23.8 -48.6 -65.0 13.7 39.7 31.5 33 33 A K H > S+ 0 0 152 2,-0.2 4,-2.9 3,-0.2 -1,-0.2 0.912 123.2 54.9 -73.7 -33.4 17.1 41.2 30.4 34 34 A T H > S+ 0 0 49 2,-0.2 4,-1.1 1,-0.2 -2,-0.2 0.922 112.3 43.8 -65.8 -43.7 18.6 37.7 29.9 35 35 A R H >X S+ 0 0 111 -4,-3.4 4,-2.7 2,-0.2 3,-0.5 0.922 110.8 55.0 -64.6 -41.4 15.7 36.9 27.5 36 36 A E H 3X S+ 0 0 131 -4,-2.3 4,-2.3 -5,-0.4 -2,-0.2 0.921 106.8 52.1 -56.9 -39.5 16.1 40.4 25.9 37 37 A K H 3X S+ 0 0 95 -4,-2.9 4,-2.7 2,-0.2 -1,-0.3 0.792 109.6 48.0 -63.3 -37.1 19.8 39.4 25.3 38 38 A V H X S+ 0 0 40 -4,-2.3 4,-2.2 -5,-0.2 3,-2.1 0.996 114.0 48.3 -63.1 -66.8 19.1 40.4 20.6 41 41 A A H 3X S+ 0 0 0 -4,-2.7 4,-3.2 1,-0.3 -2,-0.2 0.788 97.8 66.8 -41.0 -55.7 21.5 37.5 19.9 42 42 A M H 3< S+ 0 0 64 -4,-3.2 5,-0.4 2,-0.2 -1,-0.3 0.755 116.7 30.7 -39.6 -31.6 19.0 35.6 17.6 43 43 A A H <4 S+ 0 0 78 -3,-2.1 -2,-0.2 -4,-0.4 -1,-0.2 0.867 116.9 54.4 -94.1 -51.6 19.5 38.5 15.3 44 44 A E H < S+ 0 0 123 -4,-2.2 2,-0.3 -5,-0.1 -2,-0.2 0.700 122.4 30.2 -55.9 -31.4 23.2 39.5 16.1 45 45 A L S < S- 0 0 45 -4,-3.2 2,-1.2 -5,-0.2 -1,-0.0 -0.971 88.2-128.1-119.2 145.2 24.2 35.9 15.4 46 46 A N - 0 0 114 -2,-0.3 -42,-0.4 -44,-0.1 2,-0.2 -0.746 33.0-146.0 -97.5 79.8 22.3 33.9 12.8 47 47 A Y - 0 0 49 -2,-1.2 -42,-0.1 -5,-0.4 -41,-0.0 -0.445 6.8-149.3 -49.0 132.7 21.6 30.7 14.8 48 48 A I > - 0 0 54 -44,-1.6 3,-1.5 -2,-0.2 -42,-0.1 -0.849 20.4-128.9-110.1 101.8 21.5 27.3 13.2 49 49 A P T 3 S+ 0 0 87 0, 0.0 -44,-0.1 0, 0.0 -45,-0.0 -0.327 90.1 4.7 -53.6 116.1 19.1 24.9 14.9 50 50 A N T 3 0 0 166 1,-0.1 -45,-0.1 -2,-0.0 -2,-0.0 0.117 360.0 360.0 91.1 -15.9 20.9 21.6 15.7 51 51 A R < 0 0 179 -3,-1.5 -46,-0.4 -47,-0.3 -1,-0.1 0.616 360.0 360.0-130.3 360.0 24.4 22.6 14.6