==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-MAR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 07-APR-02 1LCX . COMPND 2 MOLECULE: GP41; . SOURCE 2 SYNTHETIC: YES; . AUTHOR Z.BIRON,S.KHARE,A.O.SAMSON,Y.HAYEK,F.NAIDER,J.ANGLISTER . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1958.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 8 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 196 0, 0.0 5,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 114.2 4.3 8.2 3.8 2 2 A L + 0 0 175 4,-0.0 2,-0.4 2,-0.0 0, 0.0 -0.017 360.0 130.3-107.4 27.9 7.2 6.0 4.9 3 3 A L > - 0 0 98 1,-0.1 3,-0.6 2,-0.0 4,-0.0 -0.710 41.2-166.9 -87.1 129.1 5.2 2.8 4.6 4 4 A E G > S+ 0 0 183 -2,-0.4 3,-0.6 1,-0.2 -1,-0.1 0.752 88.6 59.4 -83.6 -26.3 6.9 -0.1 2.7 5 5 A L G > S+ 0 0 131 1,-0.2 3,-1.3 2,-0.1 -1,-0.2 0.174 71.9 106.1 -87.3 18.0 3.7 -2.1 2.5 6 6 A D G X + 0 0 92 -3,-0.6 3,-1.8 1,-0.3 -1,-0.2 0.587 56.3 84.5 -72.4 -9.2 2.0 0.8 0.7 7 7 A K G X S+ 0 0 180 -3,-0.6 3,-0.9 1,-0.3 -1,-0.3 0.649 74.3 72.8 -67.0 -14.0 2.2 -1.3 -2.5 8 8 A W G X S+ 0 0 198 -3,-1.3 3,-1.4 1,-0.2 -1,-0.3 0.513 72.9 85.7 -78.1 -4.7 -1.0 -3.0 -1.4 9 9 A A G X S+ 0 0 66 -3,-1.8 3,-2.0 1,-0.3 -1,-0.2 0.792 75.8 67.9 -66.0 -27.9 -2.9 0.2 -2.3 10 10 A S G X S+ 0 0 92 -3,-0.9 3,-0.7 1,-0.3 -1,-0.3 0.673 91.2 63.0 -65.8 -16.0 -3.1 -1.0 -5.9 11 11 A L G < S+ 0 0 113 -3,-1.4 -1,-0.3 1,-0.2 -2,-0.2 0.456 103.0 49.0 -87.1 -1.8 -5.5 -3.7 -4.6 12 12 A W G < 0 0 233 -3,-2.0 -1,-0.2 -4,-0.1 -2,-0.2 -0.009 360.0 360.0-124.9 27.2 -8.0 -1.0 -3.5 13 13 A N < 0 0 201 -3,-0.7 -3,-0.2 0, 0.0 -2,-0.1 0.005 360.0 360.0-179.7 360.0 -8.1 1.0 -6.7