==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JUN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 18-MAY-11 2LD9 . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.KUMAR,R.HOSUR . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6547.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 57.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 18.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A G 0 0 96 0, 0.0 63,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.5 3.1 2.5 1.1 2 1 A M + 0 0 91 62,-0.1 16,-0.7 2,-0.0 2,-0.2 -0.313 360.0 162.3-150.8 58.4 3.0 4.7 -2.0 3 2 A Q E -A 17 0A 131 14,-0.1 62,-1.9 12,-0.0 2,-0.3 -0.541 18.4-158.9 -82.8 147.6 5.1 3.0 -4.7 4 3 A I E -A 16 0A 22 12,-2.3 12,-1.7 -2,-0.2 2,-0.4 -0.880 5.8-145.4-126.0 158.4 4.7 4.0 -8.4 5 4 A F E -Ab 15 67A 87 61,-2.0 63,-1.2 -2,-0.3 2,-0.4 -0.978 7.6-162.3-127.4 137.2 5.5 2.3 -11.7 6 5 A V E -Ab 14 68A 24 8,-3.3 8,-2.7 -2,-0.4 2,-0.4 -0.970 5.3-156.1-122.1 130.5 6.6 3.9 -14.9 7 6 A K E -Ab 13 69A 104 61,-2.5 63,-1.3 -2,-0.4 6,-0.2 -0.847 9.2-161.6-106.6 140.3 6.5 2.3 -18.4 8 7 A T - 0 0 44 4,-2.3 3,-0.4 -2,-0.4 63,-0.1 -0.298 33.6-104.6-104.6-169.3 8.7 3.3 -21.3 9 8 A L S S+ 0 0 115 61,-0.4 62,-0.1 1,-0.2 -1,-0.0 0.607 114.2 64.5 -93.0 -15.2 8.5 2.8 -25.1 10 9 A T S S- 0 0 91 2,-0.1 -1,-0.2 1,-0.0 3,-0.1 0.254 121.2-102.9 -90.7 11.9 11.2 0.0 -25.0 11 10 A G S S+ 0 0 68 -3,-0.4 2,-0.4 1,-0.3 -2,-0.1 0.705 78.8 140.0 74.8 19.5 8.9 -2.2 -23.0 12 11 A K - 0 0 137 2,-0.0 -4,-2.3 0, 0.0 2,-0.4 -0.793 37.2-157.9 -99.9 139.2 10.9 -1.4 -19.8 13 12 A T E -A 7 0A 77 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.962 9.2-174.4-120.1 130.1 9.2 -0.8 -16.5 14 13 A I E -A 6 0A 89 -8,-2.7 -8,-3.3 -2,-0.4 2,-0.4 -0.909 13.4-142.6-123.0 150.4 10.8 1.1 -13.6 15 14 A T E +A 5 0A 74 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.913 21.9 172.3-114.9 138.7 9.6 1.7 -10.0 16 15 A L E -A 4 0A 71 -12,-1.7 -12,-2.3 -2,-0.4 2,-0.4 -0.917 22.1-134.5-139.0 164.7 10.1 4.9 -8.0 17 16 A E E +A 3 0A 131 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.1 -0.977 34.5 140.2-126.4 136.1 9.0 6.4 -4.6 18 17 A V - 0 0 25 -16,-0.7 -2,-0.0 -2,-0.4 -16,-0.0 -0.879 39.9-101.4-154.9-175.2 7.7 9.9 -3.9 19 18 A E > - 0 0 105 -2,-0.3 3,-1.1 1,-0.1 38,-0.2 -0.808 22.9-122.5-119.6 160.8 5.2 11.9 -2.0 20 19 A P T 3 S+ 0 0 71 0, 0.0 38,-2.4 0, 0.0 39,-0.3 0.789 113.5 55.8 -69.8 -28.9 1.8 13.5 -2.8 21 20 A S T 3 S+ 0 0 110 36,-0.2 2,-0.2 37,-0.1 0, 0.0 0.390 86.2 113.0 -84.6 3.5 3.1 17.0 -1.8 22 21 A D < - 0 0 15 -3,-1.1 35,-2.4 4,-0.1 2,-0.3 -0.562 59.4-143.0 -79.5 139.5 6.0 16.5 -4.2 23 22 A T B > -E 56 0B 52 -2,-0.2 4,-3.3 33,-0.2 3,-0.4 -0.780 19.5-123.7-104.7 147.9 6.1 18.9 -7.3 24 23 A I H > S+ 0 0 29 31,-1.3 4,-0.6 -2,-0.3 32,-0.1 0.760 115.5 54.1 -57.3 -24.7 7.1 17.9 -10.8 25 24 A E H > S+ 0 0 118 28,-0.3 4,-0.5 30,-0.2 -1,-0.2 0.862 113.4 39.4 -77.8 -38.2 9.6 20.8 -10.5 26 25 A N H >> S+ 0 0 93 -3,-0.4 3,-1.4 1,-0.2 4,-0.9 0.912 110.1 57.7 -77.3 -45.5 11.2 19.5 -7.2 27 26 A V H 3X S+ 0 0 29 -4,-3.3 4,-1.3 1,-0.3 -1,-0.2 0.775 97.5 66.1 -56.0 -26.3 11.1 15.8 -8.2 28 27 A K H 3X S+ 0 0 71 -4,-0.6 4,-2.4 -5,-0.3 -1,-0.3 0.863 92.8 59.2 -64.3 -36.6 13.2 16.8 -11.2 29 28 A A H X>S+ 0 0 65 -4,-1.3 4,-3.3 1,-0.2 5,-1.4 0.895 112.5 48.0 -69.6 -41.2 16.5 12.8 -11.1 32 31 A Q H 3<5S+ 0 0 102 -4,-2.4 -2,-0.2 3,-0.3 -1,-0.2 0.843 108.5 54.6 -68.1 -34.2 19.2 15.3 -12.1 33 32 A D T 3<5S+ 0 0 135 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.582 117.6 37.8 -75.3 -9.4 21.1 14.5 -8.9 34 33 A K T <45S- 0 0 163 -3,-0.8 -2,-0.2 -4,-0.3 -1,-0.2 0.769 145.9 -4.2-106.9 -42.8 21.0 10.8 -9.9 35 34 A E T <5S- 0 0 138 -4,-3.3 -3,-0.3 -5,-0.1 -2,-0.1 0.622 79.8-136.1-122.0 -33.9 21.4 11.0 -13.7 36 35 A G < + 0 0 34 -5,-1.4 -4,-0.2 1,-0.2 -3,-0.1 0.709 44.8 158.0 80.3 20.7 21.5 14.7 -14.4 37 36 A I - 0 0 51 -6,-0.4 -1,-0.2 2,-0.0 -2,-0.1 -0.703 37.4-136.5 -84.4 110.7 19.2 14.2 -17.4 38 37 A P > - 0 0 75 0, 0.0 2,-2.5 0, 0.0 3,-1.0 -0.489 10.4-131.2 -69.8 125.7 17.6 17.6 -18.2 39 38 A P T 3 S+ 0 0 60 0, 0.0 -2,-0.0 0, 0.0 -11,-0.0 -0.089 80.0 108.7 -69.7 42.5 13.8 17.3 -19.0 40 39 A D T 3 S+ 0 0 148 -2,-2.5 -3,-0.0 1,-0.1 0, 0.0 0.795 89.4 25.4 -88.5 -33.0 14.4 19.4 -22.1 41 40 A Q S < S+ 0 0 113 -3,-1.0 2,-0.5 32,-0.1 -1,-0.1 0.347 108.2 91.1-110.5 1.8 13.9 16.6 -24.6 42 41 A Q - 0 0 68 -4,-0.2 2,-0.5 31,-0.1 30,-0.1 -0.865 54.6-168.4-104.2 131.0 11.8 14.4 -22.4 43 42 A R - 0 0 161 -2,-0.5 28,-0.8 28,-0.1 2,-0.5 -0.954 8.2-153.3-122.8 114.5 8.0 14.8 -22.4 44 43 A L E -C 70 0A 65 -2,-0.5 7,-2.2 7,-0.3 2,-0.4 -0.729 16.8-177.7 -88.6 128.3 5.9 13.1 -19.7 45 44 A I E +CD 69 50A 59 24,-1.0 24,-1.4 -2,-0.5 2,-0.3 -0.975 7.9 167.4-128.9 141.3 2.3 12.2 -20.7 46 45 A F E > - D 0 49A 41 3,-2.3 3,-2.3 -2,-0.4 22,-0.1 -0.963 68.1 -0.3-154.6 133.7 -0.5 10.6 -18.7 47 46 A A T 3 S- 0 0 81 -2,-0.3 3,-0.1 1,-0.3 21,-0.0 0.775 126.1 -63.3 60.0 26.1 -4.2 10.1 -19.2 48 47 A G T 3 S+ 0 0 81 1,-0.2 2,-0.5 0, 0.0 -1,-0.3 0.473 116.9 113.4 78.3 0.6 -3.8 11.9 -22.5 49 48 A K E < -D 46 0A 141 -3,-2.3 -3,-2.3 3,-0.0 2,-0.4 -0.908 69.2-124.9-110.5 132.3 -2.7 15.0 -20.6 50 49 A Q E -D 45 0A 126 -2,-0.5 2,-0.4 -5,-0.2 -5,-0.2 -0.596 31.7-112.4 -76.5 125.3 0.8 16.4 -20.8 51 50 A L - 0 0 33 -7,-2.2 2,-0.3 -2,-0.4 -7,-0.3 -0.405 36.1-151.5 -60.1 114.0 2.4 16.8 -17.4 52 51 A E > - 0 0 105 -2,-0.4 3,-2.6 1,-0.1 -28,-0.2 -0.643 21.9-123.1 -90.9 146.9 2.7 20.6 -16.9 53 52 A D T 3 S+ 0 0 113 1,-0.3 -28,-0.3 -2,-0.3 -1,-0.1 0.733 114.6 59.8 -58.0 -21.6 5.5 22.1 -14.7 54 53 A G T 3 S+ 0 0 72 -30,-0.1 2,-0.3 -31,-0.1 -1,-0.3 0.271 88.1 99.6 -91.1 11.7 2.6 23.7 -12.7 55 54 A R < - 0 0 8 -3,-2.6 -31,-1.3 5,-0.0 2,-0.3 -0.764 59.3-151.0-101.1 145.2 1.2 20.3 -11.9 56 55 A T B > -E 23 0B 41 -2,-0.3 4,-1.4 -33,-0.2 -33,-0.2 -0.756 24.8-116.2-112.7 160.1 1.7 18.5 -8.6 57 56 A L T >4>S+ 0 0 29 -35,-2.4 5,-1.3 -2,-0.3 3,-0.6 0.958 119.6 34.5 -56.5 -55.3 1.8 14.8 -7.7 58 57 A S G >45S+ 0 0 70 -38,-2.4 3,-1.5 -36,-0.3 -1,-0.2 0.811 111.6 64.0 -70.4 -30.6 -1.3 15.0 -5.5 59 58 A D G 345S+ 0 0 106 -39,-0.3 -1,-0.2 1,-0.3 -2,-0.2 0.775 100.0 53.3 -63.8 -26.1 -2.9 17.6 -7.8 60 59 A Y G <<5S- 0 0 45 -4,-1.4 -1,-0.3 -3,-0.6 -2,-0.2 0.482 107.9-129.1 -86.9 -3.7 -2.9 14.9 -10.5 61 60 A N T < 5 + 0 0 136 -3,-1.5 2,-0.9 1,-0.2 -3,-0.2 0.849 40.6 177.5 58.1 35.3 -4.8 12.6 -8.2 62 61 A I < - 0 0 26 -5,-1.3 -1,-0.2 -42,-0.1 3,-0.1 -0.612 12.2-157.7 -75.7 106.0 -2.2 9.9 -9.0 63 62 A Q > - 0 0 146 -2,-0.9 3,-0.8 -3,-0.2 2,-0.2 -0.083 32.0 -71.8 -74.1 179.0 -3.2 6.9 -6.8 64 63 A K T 3 S+ 0 0 147 1,-0.2 -60,-0.2 -63,-0.1 -1,-0.2 -0.487 117.2 26.7 -75.7 143.2 -0.8 4.1 -5.8 65 64 A E T 3 S+ 0 0 156 -62,-1.9 -1,-0.2 1,-0.2 -61,-0.2 0.762 86.4 163.1 77.3 26.2 0.3 1.6 -8.5 66 65 A S < - 0 0 21 -3,-0.8 -61,-2.0 -63,-0.3 2,-0.5 -0.478 30.2-142.3 -78.8 148.7 -0.2 4.2 -11.2 67 66 A T E -b 5 0A 66 -2,-0.2 2,-0.3 -63,-0.1 -61,-0.2 -0.954 16.5-171.9-117.9 120.4 1.4 3.7 -14.6 68 67 A L E -b 6 0A 32 -63,-1.2 -61,-2.5 -2,-0.5 2,-0.3 -0.852 21.8-121.7-111.6 146.5 2.9 6.7 -16.5 69 68 A H E -bC 7 45A 97 -24,-1.4 -24,-1.0 -2,-0.3 2,-0.5 -0.613 19.8-153.1 -86.3 143.8 4.2 6.7 -20.1 70 69 A L E - C 0 44A 41 -63,-1.3 -61,-0.4 -2,-0.3 2,-0.2 -0.964 6.3-154.1-122.6 118.8 7.8 7.8 -20.9 71 70 A V - 0 0 59 -28,-0.8 2,-0.3 -2,-0.5 -28,-0.1 -0.528 9.7-139.3 -88.0 155.9 8.7 9.3 -24.2 72 71 A L - 0 0 88 -2,-0.2 2,-0.6 -30,-0.1 -30,-0.0 -0.845 9.3-128.1-116.0 152.7 12.2 9.1 -25.7 73 72 A R - 0 0 84 -2,-0.3 2,-0.3 2,-0.0 -31,-0.1 -0.884 21.5-152.4-104.0 119.0 14.2 11.7 -27.6 74 73 A L - 0 0 161 -2,-0.6 2,-0.6 -33,-0.1 3,-0.1 -0.647 4.5-144.5 -90.0 145.4 15.7 10.7 -31.0 75 74 A R + 0 0 229 -2,-0.3 -2,-0.0 1,-0.1 -1,-0.0 -0.925 67.7 29.3-114.2 111.6 18.8 12.2 -32.4 76 75 A G 0 0 80 -2,-0.6 -1,-0.1 0, 0.0 0, 0.0 0.443 360.0 360.0 110.1 111.9 18.9 12.7 -36.2 77 76 A G 0 0 137 -3,-0.1 -2,-0.0 0, 0.0 -3,-0.0 0.384 360.0 360.0 161.9 360.0 16.0 13.4 -38.5