==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 06-JUN-11 2LE4 . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR SOX-2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.C.SAHU,J.L.MARKLEY,M.TONELLI,A.BAHRAMI,H.R.EGHBALNIA,CENTE . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7896.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 174 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 111.7 1.3 -5.5 -18.0 2 2 A D + 0 0 149 2,-0.1 2,-0.2 0, 0.0 0, 0.0 0.184 360.0 145.5-127.6 13.7 -2.0 -3.8 -19.1 3 3 A R - 0 0 216 1,-0.1 2,-0.0 2,-0.0 0, 0.0 -0.381 47.5-129.1 -57.3 122.6 -4.1 -4.2 -16.0 4 4 A V - 0 0 126 -2,-0.2 2,-0.5 1,-0.0 -1,-0.1 -0.215 9.7-141.3 -79.7 164.9 -6.2 -1.0 -15.9 5 5 A K + 0 0 105 58,-0.1 -1,-0.0 56,-0.1 -2,-0.0 -0.935 23.8 177.6-132.4 105.5 -6.6 1.4 -13.0 6 6 A R - 0 0 159 -2,-0.5 2,-0.3 57,-0.0 55,-0.1 -0.757 31.8-106.4-109.7 155.1 -10.0 2.8 -12.4 7 7 A P + 0 0 54 0, 0.0 2,-0.3 0, 0.0 51,-0.1 -0.593 45.1 163.4 -78.1 139.9 -11.4 5.2 -9.7 8 8 A M - 0 0 73 -2,-0.3 52,-0.1 1,-0.1 53,-0.1 -0.905 39.7 -77.0-147.5 169.4 -13.6 3.7 -7.0 9 9 A N >> - 0 0 94 -2,-0.3 4,-2.1 1,-0.1 3,-0.5 -0.135 60.4 -81.8 -67.6 174.4 -15.0 4.6 -3.6 10 10 A A H 3> S+ 0 0 21 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.794 120.3 58.0 -46.9 -50.5 -12.9 4.4 -0.3 11 11 A F H 3> S+ 0 0 94 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.919 114.1 36.9 -55.1 -50.6 -13.3 0.6 0.4 12 12 A M H <> S+ 0 0 74 -3,-0.5 4,-2.8 2,-0.2 5,-0.3 0.909 114.7 57.4 -68.8 -40.9 -11.8 -0.6 -2.9 13 13 A V H X S+ 0 0 0 -4,-2.1 4,-3.6 1,-0.2 5,-0.4 0.939 108.2 44.9 -53.9 -54.0 -9.3 2.2 -2.9 14 14 A W H X S+ 0 0 23 -4,-2.9 4,-1.7 1,-0.2 5,-0.4 0.852 113.0 53.7 -61.5 -33.3 -7.8 1.3 0.4 15 15 A S H X S+ 0 0 14 -4,-1.5 4,-1.2 -5,-0.3 -2,-0.2 0.937 118.3 33.0 -67.0 -46.1 -7.8 -2.3 -0.7 16 16 A R H X S+ 0 0 155 -4,-2.8 4,-2.0 2,-0.2 -2,-0.2 0.933 122.4 46.1 -77.3 -47.6 -5.9 -1.7 -3.9 17 17 A G H X S+ 0 0 3 -4,-3.6 4,-3.0 -5,-0.3 5,-0.3 0.947 115.9 43.2 -63.1 -52.5 -3.7 1.2 -2.7 18 18 A Q H X S+ 0 0 30 -4,-1.7 4,-2.6 -5,-0.4 5,-0.5 0.896 112.8 53.9 -62.2 -40.7 -2.6 -0.4 0.6 19 19 A R H X S+ 0 0 121 -4,-1.2 4,-1.4 -5,-0.4 -1,-0.2 0.887 114.3 43.2 -60.2 -38.0 -2.1 -3.7 -1.1 20 20 A R H X S+ 0 0 153 -4,-2.0 4,-1.5 2,-0.2 -2,-0.2 0.980 118.5 40.0 -70.9 -57.8 0.2 -1.9 -3.6 21 21 A K H X S+ 0 0 52 -4,-3.0 4,-1.9 1,-0.2 5,-0.2 0.909 120.3 44.2 -63.8 -43.0 2.2 0.3 -1.3 22 22 A M H X S+ 0 0 41 -4,-2.6 4,-3.5 -5,-0.3 7,-0.3 0.889 108.8 56.4 -70.5 -38.6 2.6 -2.3 1.5 23 23 A A H < S+ 0 0 14 -4,-1.4 -1,-0.2 -5,-0.5 -2,-0.2 0.826 113.9 41.1 -63.5 -30.9 3.5 -5.1 -0.9 24 24 A Q H < S+ 0 0 135 -4,-1.5 -1,-0.2 -3,-0.1 -2,-0.2 0.826 122.7 38.5 -83.8 -34.4 6.4 -3.1 -2.2 25 25 A E H < S+ 0 0 142 -4,-1.9 -2,-0.2 1,-0.3 -3,-0.2 0.849 131.9 25.8 -88.0 -38.5 7.5 -1.7 1.1 26 26 A N S >< S- 0 0 49 -4,-3.5 3,-2.1 3,-0.2 -1,-0.3 -0.751 77.7-172.3-124.5 85.3 6.9 -4.8 3.2 27 27 A P T 3 S+ 0 0 88 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.743 74.7 64.8 -52.5 -37.2 7.3 -7.6 0.6 28 28 A K T 3 S+ 0 0 182 1,-0.1 2,-0.5 2,-0.1 3,-0.1 0.480 93.5 68.6 -76.6 -0.0 6.2 -10.5 2.8 29 29 A M < + 0 0 59 -3,-2.1 -3,-0.2 -7,-0.3 -1,-0.1 -0.965 61.3 108.0-115.6 114.0 2.7 -9.0 3.1 30 30 A H + 0 0 91 -2,-0.5 2,-0.1 -6,-0.0 -1,-0.1 0.214 66.9 52.1-171.7 10.9 1.1 -9.2 -0.3 31 31 A N S >> S- 0 0 93 -3,-0.1 4,-1.5 -8,-0.0 3,-0.8 -0.377 109.8 -36.0-139.9-152.2 -1.6 -11.9 -0.1 32 32 A S H 3> S+ 0 0 82 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.769 125.8 64.6 -54.8 -27.8 -4.6 -13.0 1.9 33 33 A E H 3> S+ 0 0 72 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.936 102.2 48.4 -66.5 -41.8 -2.9 -11.9 5.1 34 34 A I H <> S+ 0 0 3 -3,-0.8 4,-3.0 1,-0.2 5,-0.2 0.898 109.5 54.2 -56.4 -40.5 -3.1 -8.3 3.8 35 35 A S H X S+ 0 0 81 -4,-1.5 4,-1.5 1,-0.2 -2,-0.2 0.864 110.3 45.7 -64.9 -34.1 -6.7 -9.0 3.0 36 36 A K H X S+ 0 0 134 -4,-2.1 4,-1.9 2,-0.2 -2,-0.2 0.895 113.6 49.9 -75.2 -40.8 -7.3 -10.1 6.6 37 37 A R H X S+ 0 0 139 -4,-2.8 4,-3.2 2,-0.2 5,-0.2 0.961 110.6 48.1 -59.7 -53.9 -5.5 -7.1 7.9 38 38 A L H X S+ 0 0 9 -4,-3.0 4,-2.4 1,-0.2 -1,-0.2 0.865 110.1 51.8 -61.8 -39.5 -7.3 -4.5 5.8 39 39 A G H X S+ 0 0 41 -4,-1.5 4,-1.5 -5,-0.2 -1,-0.2 0.930 114.6 42.9 -61.5 -44.7 -10.7 -5.9 6.7 40 40 A A H X S+ 0 0 44 -4,-1.9 4,-1.3 1,-0.2 -2,-0.2 0.915 114.7 49.9 -66.3 -43.1 -9.9 -5.8 10.4 41 41 A E H < S+ 0 0 102 -4,-3.2 -2,-0.2 1,-0.2 -1,-0.2 0.839 106.5 57.3 -66.0 -33.5 -8.3 -2.3 10.1 42 42 A W H >< S+ 0 0 72 -4,-2.4 3,-1.5 -5,-0.2 -1,-0.2 0.890 104.1 51.2 -63.2 -41.5 -11.4 -1.1 8.2 43 43 A K H 3< S+ 0 0 175 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.2 0.835 114.7 43.4 -67.1 -30.9 -13.7 -2.0 11.1 44 44 A L T 3< S+ 0 0 119 -4,-1.3 -1,-0.3 -5,-0.1 -2,-0.2 0.063 86.6 154.8 -99.7 23.8 -11.4 -0.1 13.4 45 45 A L < - 0 0 54 -3,-1.5 2,-0.4 -5,-0.1 -3,-0.1 -0.294 33.7-147.6 -59.2 124.8 -11.1 2.8 11.0 46 46 A S >> - 0 0 70 1,-0.1 3,-2.4 -2,-0.1 4,-0.7 -0.788 21.8-119.6 -92.3 141.0 -10.3 6.1 12.7 47 47 A E H >> S+ 0 0 174 -2,-0.4 4,-0.8 1,-0.3 3,-0.6 0.741 111.7 65.6 -52.1 -28.8 -11.8 9.3 11.0 48 48 A T H 34 S+ 0 0 91 1,-0.3 -1,-0.3 2,-0.2 3,-0.3 0.838 103.7 46.4 -63.7 -30.6 -8.2 10.6 10.5 49 49 A E H <> S+ 0 0 83 -3,-2.4 4,-0.6 1,-0.2 -1,-0.3 0.566 94.6 79.9 -87.0 -12.3 -7.6 7.7 8.1 50 50 A K H XX S+ 0 0 119 -4,-0.7 3,-1.0 -3,-0.6 4,-0.7 0.907 87.6 55.7 -58.3 -44.8 -11.0 8.4 6.4 51 51 A R H >X S+ 0 0 147 -4,-0.8 4,-1.8 -3,-0.3 3,-1.3 0.907 99.3 57.2 -61.4 -44.9 -9.5 11.3 4.3 52 52 A P H 3> S+ 0 0 25 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.676 94.2 70.4 -63.8 -14.4 -6.6 9.2 2.7 53 53 A F H < S+ 0 0 100 -4,-0.9 3,-1.1 1,-0.2 -2,-0.2 0.854 105.4 49.0 -76.8 -35.4 -5.6 6.5 -15.0 65 65 A M H 3< S+ 0 0 131 -4,-1.4 -2,-0.2 1,-0.3 -1,-0.2 0.646 95.8 73.1 -79.4 -15.1 -4.5 9.7 -16.8 66 66 A K T 3< S+ 0 0 160 -4,-1.0 -1,-0.3 -5,-0.1 2,-0.2 0.613 93.8 69.9 -68.3 -13.3 -1.0 8.3 -17.0 67 67 A E S < S- 0 0 116 -3,-1.1 -3,-0.0 1,-0.2 -63,-0.0 -0.566 109.8 -68.0 -98.6 167.7 -2.6 6.1 -19.7 68 68 A H - 0 0 139 -2,-0.2 -1,-0.2 1,-0.1 -2,-0.1 -0.213 57.8-116.4 -55.5 143.8 -3.8 7.2 -23.1 69 69 A P - 0 0 83 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 -0.048 33.4 -90.4 -72.8-177.8 -6.9 9.5 -23.1 70 70 A D + 0 0 127 2,-0.0 2,-0.1 0, 0.0 -2,-0.0 0.082 66.8 158.9 -84.7 24.8 -10.3 8.7 -24.5 71 71 A Y - 0 0 132 1,-0.1 3,-0.1 3,-0.0 2,-0.0 -0.314 23.6-165.1 -53.8 120.3 -9.2 10.2 -27.8 72 72 A K - 0 0 155 1,-0.2 2,-0.2 -2,-0.1 -1,-0.1 -0.075 34.0 -31.5-103.7-164.7 -11.5 8.8 -30.4 73 73 A Y S S- 0 0 227 1,-0.1 -1,-0.2 2,-0.1 0, 0.0 -0.334 70.0-113.8 -58.5 116.9 -11.8 8.4 -34.1 74 74 A R - 0 0 143 -2,-0.2 4,-0.1 1,-0.1 -1,-0.1 -0.140 15.7-127.9 -45.7 143.9 -10.2 11.4 -35.8 75 75 A P S S- 0 0 109 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.924 84.9 -43.1 -63.7 -47.2 -12.7 13.7 -37.7 76 76 A R S S+ 0 0 216 1,-0.5 2,-0.3 0, 0.0 -2,-0.1 0.290 127.2 11.7-148.2 -51.5 -10.5 13.5 -40.9 77 77 A R - 0 0 194 2,-0.0 -1,-0.5 4,-0.0 2,-0.4 -0.938 59.0-156.3-131.4 156.7 -6.9 13.8 -39.9 78 78 A K - 0 0 68 -2,-0.3 3,-0.5 -4,-0.1 -4,-0.0 -0.994 12.9-152.7-135.9 131.5 -5.1 13.7 -36.5 79 79 A T S S+ 0 0 131 -2,-0.4 -1,-0.0 1,-0.2 -2,-0.0 -0.048 95.0 56.4 -91.5 32.1 -1.7 15.3 -35.8 80 80 A K 0 0 168 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.263 360.0 360.0-153.0 52.5 -1.0 12.8 -33.1 81 81 A T 0 0 164 -3,-0.5 -2,-0.1 0, 0.0 -4,-0.0 0.989 360.0 360.0 -79.2 360.0 -1.4 9.5 -34.9