==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-JUN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 24-JUN-11 2LEW . COMPND 2 MOLECULE: ALPHA-DEFENSIN 4; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.ROSENGREN,H.S.ANDERSSON,L.M.HAUGAARD-KEDSTROM,E.BENGTSSON, . 32 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2947.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 53.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 31.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G > 0 0 69 0, 0.0 3,-2.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-144.7 7.3 5.3 5.8 2 2 A L T 3 - 0 0 168 1,-0.3 27,-0.0 27,-0.1 0, 0.0 -0.181 360.0 -35.4 49.3-131.9 5.6 8.6 5.0 3 3 A L T 3 S+ 0 0 128 2,-0.1 -1,-0.3 0, 0.0 2,-0.1 -0.080 100.4 135.5-110.5 30.6 1.9 8.2 4.9 4 4 A a < - 0 0 21 -3,-2.3 2,-0.4 25,-0.2 25,-0.2 -0.435 39.4-152.2 -78.2 154.0 2.1 4.8 3.3 5 5 A Y E -A 28 0A 40 23,-2.4 23,-2.3 -2,-0.1 2,-0.5 -0.991 10.7-137.7-135.9 140.5 -0.1 1.9 4.6 6 6 A b E +A 27 0A 46 -2,-0.4 2,-0.4 21,-0.2 21,-0.2 -0.824 28.3 177.8 -94.6 123.0 0.2 -1.8 4.8 7 7 A R E -A 26 0A 117 19,-3.1 19,-3.5 -2,-0.5 2,-0.3 -0.994 29.3-120.6-132.8 133.5 -3.0 -3.7 3.8 8 8 A K E S-A 25 0A 140 -2,-0.4 2,-1.4 17,-0.3 17,-0.3 -0.533 93.0 -7.5 -72.6 128.5 -3.6 -7.4 3.6 9 9 A G S S+ 0 0 50 15,-2.1 2,-0.3 -2,-0.3 -1,-0.2 -0.317 138.4 0.8 84.3 -53.1 -4.7 -8.5 0.2 10 10 A H S S- 0 0 117 -2,-1.4 -2,-0.1 16,-0.1 5,-0.1 -0.906 79.4-100.3-168.9 138.5 -5.1 -5.0 -1.2 11 11 A c - 0 0 4 -2,-0.3 3,-0.5 -4,-0.1 2,-0.3 -0.272 39.6-122.3 -61.2 143.4 -4.6 -1.4 -0.1 12 12 A K S S- 0 0 138 1,-0.2 -1,-0.1 16,-0.1 16,-0.1 -0.722 82.7 -6.2 -92.8 140.4 -7.7 0.5 0.9 13 13 A R S S+ 0 0 193 -2,-0.3 -1,-0.2 1,-0.1 2,-0.2 0.860 117.7 86.3 43.9 49.6 -8.7 3.7 -0.8 14 14 A G - 0 0 25 -3,-0.5 -3,-0.1 1,-0.0 -1,-0.1 -0.776 49.5-172.2-176.1 128.7 -5.5 3.8 -2.8 15 15 A G + 0 0 55 -2,-0.2 2,-0.2 1,-0.1 -2,-0.0 -0.243 62.8 100.7-117.8 42.8 -4.1 2.5 -6.0 16 16 A R - 0 0 137 16,-0.1 13,-2.1 15,-0.0 15,-0.2 -0.532 52.6-174.0-125.6 63.3 -0.5 3.5 -5.6 17 17 A V E -B 28 0A 74 11,-0.3 11,-0.3 1,-0.2 3,-0.1 -0.375 11.8-174.6 -61.9 130.3 1.2 0.3 -4.5 18 18 A R E - 0 0 154 9,-2.9 2,-0.3 1,-0.4 10,-0.2 0.705 60.7 -56.5 -96.9 -26.7 4.8 0.9 -3.6 19 19 A G E S-B 27 0A 32 8,-1.9 8,-3.0 2,-0.0 -1,-0.4 -0.973 72.0 -47.0 169.4-176.3 5.6 -2.7 -3.0 20 20 A T E -B 26 0A 120 -2,-0.3 2,-0.7 6,-0.2 6,-0.3 -0.631 34.3-148.1 -82.7 135.9 4.8 -5.9 -1.1 21 21 A b - 0 0 43 4,-2.5 2,-0.4 -2,-0.3 5,-0.2 -0.347 63.2 -78.1 -95.2 49.6 4.3 -5.6 2.6 22 22 A G S S- 0 0 51 -2,-0.7 2,-0.5 3,-0.1 3,-0.3 -0.744 98.4 -1.4 94.2-137.8 5.6 -9.1 3.2 23 23 A I S S- 0 0 143 -2,-0.4 3,-0.1 1,-0.2 0, 0.0 -0.824 135.0 -12.7 -98.4 125.6 3.4 -12.1 2.5 24 24 A R S S+ 0 0 217 -2,-0.5 -15,-2.1 1,-0.2 2,-0.4 0.669 112.9 108.1 62.5 20.6 -0.2 -11.5 1.3 25 25 A F E -A 8 0A 78 -3,-0.3 -4,-2.5 -17,-0.3 2,-0.4 -0.975 55.9-151.0-129.5 141.7 0.2 -7.8 2.3 26 26 A L E -AB 7 20A 43 -19,-3.5 -19,-3.1 -2,-0.4 2,-0.6 -0.920 2.9-153.3-114.7 137.8 0.5 -4.7 0.0 27 27 A Y E -AB 6 19A 68 -8,-3.0 -9,-2.9 -2,-0.4 -8,-1.9 -0.937 19.3-177.4-111.4 114.9 2.3 -1.5 0.9 28 28 A c E -AB 5 17A 2 -23,-2.3 -23,-2.4 -2,-0.6 -11,-0.3 -0.913 13.8-157.3-117.9 143.8 1.0 1.6 -0.8 29 29 A a - 0 0 13 -13,-2.1 2,-2.0 -2,-0.4 3,-0.4 -0.971 18.1-138.6-120.3 126.7 2.2 5.2 -0.7 30 30 A P S S+ 0 0 68 0, 0.0 -13,-0.1 0, 0.0 -26,-0.0 -0.204 79.9 95.6 -76.6 48.5 -0.1 8.1 -1.6 31 31 A R 0 0 176 -2,-2.0 -3,-0.0 -15,-0.2 -27,-0.0 0.856 360.0 360.0 -98.4 -72.9 2.7 9.9 -3.5 32 32 A R 0 0 217 -3,-0.4 -1,-0.1 -16,-0.1 -16,-0.1 -0.703 360.0 360.0 172.2 360.0 2.4 9.0 -7.2