==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-AUG-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 06-JUL-11 2LFM . COMPND 2 MOLECULE: BETA-AMYLOID PROTEIN 40; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.VIVEKANANDAN,J.R.BRENDER,S.Y.LEE,A.RAMAMOORTHY . 40 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4406.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 37.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 187 0, 0.0 2,-0.4 0, 0.0 21,-0.1 0.000 360.0 360.0 360.0 56.5 3.0 -4.7 -5.5 2 2 A A - 0 0 74 19,-0.2 2,-0.2 0, 0.0 22,-0.1 -0.919 360.0-133.7-113.7 135.2 2.0 -1.0 -5.3 3 3 A E - 0 0 133 -2,-0.4 3,-0.1 1,-0.1 19,-0.1 -0.533 18.1-177.7 -84.8 151.1 -0.2 0.7 -7.9 4 4 A F S S+ 0 0 98 1,-0.3 2,-0.4 -2,-0.2 -1,-0.1 0.666 71.7 35.2-115.9 -33.9 0.7 4.1 -9.4 5 5 A R - 0 0 135 1,-0.0 -1,-0.3 0, 0.0 3,-0.0 -0.990 50.2-177.0-130.0 130.2 -2.2 4.9 -11.6 6 6 A H + 0 0 170 -2,-0.4 2,-0.3 -3,-0.1 -1,-0.0 -0.286 67.4 53.0-117.5 45.7 -5.9 4.0 -11.1 7 7 A D S S- 0 0 136 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.935 83.9 -95.7-173.1 150.3 -7.3 5.3 -14.3 8 8 A S - 0 0 110 -2,-0.3 -2,-0.1 1,-0.1 0, 0.0 -0.043 31.0-176.4 -64.3 172.7 -6.9 5.0 -18.1 9 9 A G - 0 0 51 1,-0.3 2,-0.3 3,-0.0 -1,-0.1 0.438 44.7 -39.0-133.8 -80.2 -5.0 7.6 -20.1 10 10 A Y - 0 0 172 2,-0.2 -1,-0.3 1,-0.0 5,-0.1 -0.940 44.6-106.8-152.3 171.6 -4.8 7.4 -23.9 11 11 A E S S+ 0 0 152 -2,-0.3 2,-0.1 3,-0.0 -1,-0.0 0.593 74.7 127.3 -79.3 -11.1 -4.5 5.0 -26.8 12 12 A V > - 0 0 49 1,-0.2 3,-0.9 2,-0.1 -2,-0.2 -0.274 45.7-164.3 -51.4 113.9 -0.8 6.2 -27.3 13 13 A H G > S+ 0 0 165 1,-0.2 3,-2.6 2,-0.2 -1,-0.2 0.721 81.0 77.8 -74.3 -21.7 1.2 2.9 -27.3 14 14 A H G > S+ 0 0 170 1,-0.3 3,-1.0 2,-0.2 -1,-0.2 0.769 84.2 64.4 -58.3 -25.4 4.3 5.0 -26.7 15 15 A Q G X S+ 0 0 79 -3,-0.9 3,-3.1 1,-0.2 -1,-0.3 0.542 71.2 98.8 -75.7 -6.3 3.2 5.2 -23.1 16 16 A K G X + 0 0 113 -3,-2.6 3,-2.4 1,-0.3 -1,-0.2 0.760 63.0 79.3 -51.7 -25.0 3.7 1.4 -22.9 17 17 A L G X + 0 0 119 -3,-1.0 3,-2.3 1,-0.3 -1,-0.3 0.726 69.5 84.0 -56.9 -20.7 7.0 2.2 -21.3 18 18 A V G X> + 0 0 46 -3,-3.1 3,-3.0 1,-0.3 4,-1.0 0.723 64.9 87.5 -55.8 -20.6 5.0 2.8 -18.1 19 19 A F H <> + 0 0 62 -3,-2.4 4,-2.6 1,-0.3 -1,-0.3 0.797 68.8 77.5 -49.7 -29.9 5.3 -1.0 -17.7 20 20 A F H <4 S+ 0 0 145 -3,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.799 102.1 38.0 -51.6 -29.7 8.5 -0.2 -15.9 21 21 A A H <4 S+ 0 0 23 -3,-3.0 3,-0.3 -4,-0.2 -1,-0.3 0.699 113.0 56.0 -93.8 -24.3 6.4 0.8 -12.9 22 22 A E H >< S+ 0 0 130 -4,-1.0 2,-1.2 1,-0.2 3,-0.5 0.728 92.2 73.5 -79.1 -23.3 3.8 -1.9 -13.4 23 23 A D T 3< + 0 0 90 -4,-2.6 -1,-0.2 1,-0.2 -3,-0.1 -0.307 57.2 125.5 -87.1 51.9 6.5 -4.6 -13.3 24 24 A V T 3 + 0 0 79 -2,-1.2 -1,-0.2 -3,-0.3 2,-0.2 0.786 60.7 65.3 -79.3 -29.2 6.9 -4.2 -9.5 25 25 A G S < S- 0 0 53 -3,-0.5 2,-0.4 -23,-0.0 -3,-0.0 -0.528 74.4-138.7 -93.7 162.2 6.3 -7.9 -8.8 26 26 A S - 0 0 121 -2,-0.2 -2,-0.0 0, 0.0 2,-0.0 -0.980 17.5-124.9-125.9 125.0 8.4 -10.8 -9.8 27 27 A N - 0 0 126 -2,-0.4 3,-0.2 1,-0.1 0, 0.0 -0.335 10.9-143.1 -65.1 144.2 7.1 -14.1 -11.1 28 28 A K S S- 0 0 226 1,-0.3 2,-0.3 -2,-0.0 -1,-0.1 0.954 82.9 -1.1 -73.1 -52.5 8.1 -17.3 -9.3 29 29 A G + 0 0 62 1,-0.1 -1,-0.3 2,-0.0 3,-0.2 -0.883 55.9 160.5-147.8 112.8 8.4 -19.6 -12.3 30 30 A A > + 0 0 53 -2,-0.3 3,-1.5 -3,-0.2 -1,-0.1 -0.053 33.7 128.9-118.5 30.0 7.7 -18.7 -15.9 31 31 A I T 3 S+ 0 0 167 1,-0.3 -1,-0.1 3,-0.0 -2,-0.0 0.776 72.5 60.5 -55.3 -26.5 9.6 -21.5 -17.5 32 32 A I T 3 S+ 0 0 164 -3,-0.2 2,-0.8 1,-0.1 -1,-0.3 0.814 92.2 75.2 -71.5 -31.0 6.5 -22.2 -19.5 33 33 A G < - 0 0 41 -3,-1.5 -1,-0.1 1,-0.2 -3,-0.1 -0.754 60.6-169.7 -89.3 111.7 6.6 -18.8 -21.1 34 34 A L S S+ 0 0 172 -2,-0.8 2,-0.3 1,-0.1 -1,-0.2 0.833 77.0 18.0 -66.0 -32.8 9.2 -18.5 -23.8 35 35 A M S S- 0 0 139 -3,-0.1 2,-0.4 5,-0.0 -1,-0.1 -0.920 74.6-128.3-137.1 162.3 8.7 -14.7 -23.9 36 36 A V >> - 0 0 87 -2,-0.3 4,-1.9 1,-0.1 3,-1.6 -0.906 16.9-131.9-115.4 141.4 7.3 -12.0 -21.7 37 37 A G T 34 S+ 0 0 46 -2,-0.4 -1,-0.1 1,-0.3 0, 0.0 0.723 98.8 81.1 -60.2 -20.6 4.7 -9.4 -22.8 38 38 A G T 34 S+ 0 0 22 1,-0.2 -1,-0.3 -19,-0.0 -19,-0.1 0.848 111.1 19.5 -54.2 -36.4 7.0 -6.8 -21.1 39 39 A V T <4 0 0 125 -3,-1.6 -1,-0.2 1,-0.1 -2,-0.2 0.664 360.0 360.0-105.4 -25.6 9.1 -6.8 -24.2 40 40 A V < 0 0 114 -4,-1.9 -1,-0.1 0, 0.0 -5,-0.0 -0.899 360.0 360.0-106.5 360.0 6.6 -8.3 -26.7